Contacts of the helix formed by residues 422 - 500 (chain A) in PDB entry 4KIK
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ALA 422 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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421A LEU* 1.3 73.2 - - - +
423A PHE* 1.3 67.3 + - - +
424A PHE* 3.2 30.1 - - + -
425A GLN* 2.8 25.4 + - - +
426A LEU* 2.9 10.6 + - - -
584A GLU* 4.1 14.0 - - + +
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Residues in contact with PHE 423 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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421A LEU 3.8 1.2 + - - -
422A ALA* 1.3 71.2 - - - +
424A PHE* 1.3 62.2 + - - +
426A LEU* 3.1 8.3 + - + +
427A ARG* 2.9 45.6 + - + +
574A LEU* 3.2 54.1 - - + -
575A ARG* 4.8 2.5 - - - -
577A LYS* 4.5 6.5 - - + -
582A ARG* 3.7 70.9 - - + +
583A THR 3.8 21.0 + - - +
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Residues in contact with PHE 424 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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247A GLU* 6.0 2.5 - - - -
422A ALA* 3.2 27.6 - - + -
423A PHE* 1.3 80.6 - - + +
425A GLN* 1.4 89.2 + - + +
427A ARG* 3.5 14.2 - - - +
428A LYS* 3.3 20.4 + - - +
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Residues in contact with GLN 425 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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248A ASP 4.7 3.4 + - - -
249A LEU* 3.8 49.1 + - + +
421A LEU* 4.0 10.8 - - + +
422A ALA* 2.8 32.7 + - - +
424A PHE* 1.4 98.8 - - + +
426A LEU* 1.4 65.2 + - - +
428A LYS* 3.3 7.3 + - - +
429A VAL* 3.1 28.7 + - - +
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Residues in contact with LEU 426 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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421A LEU* 3.9 22.2 - - + +
422A ALA 2.9 7.1 + - - +
423A PHE* 3.1 11.2 + - + +
425A GLN* 1.4 72.3 - - - +
427A ARG* 1.3 58.3 + - - +
428A LYS 3.3 0.2 + - - -
429A VAL* 4.0 2.7 - - - -
430A TRP* 2.9 62.8 + - + +
574A LEU* 4.0 25.1 - - + -
583A THR 4.4 10.5 - - - +
584A GLU 4.7 0.4 - - - -
585A GLY* 3.6 37.5 - - - +
586A ASP 3.8 6.5 - - - +
587A SER* 3.6 13.2 - - - +
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Residues in contact with ARG 427 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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109A ASN* 4.6 6.1 + - - -
114A CYS* 5.8 0.2 - - - +
423A PHE* 2.9 36.4 + - + +
424A PHE* 3.5 13.0 - - - +
426A LEU* 1.3 74.1 - - - +
428A LYS* 1.3 61.2 + - - +
431A GLY* 3.3 4.9 + - - -
571A TYR* 3.2 31.7 + - + +
574A LEU* 3.6 15.0 - - + +
575A ARG* 3.2 62.8 - - + +
582A ARG* 4.5 13.5 - - - +
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Residues in contact with LYS 428 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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219A PHE* 3.3 54.8 - - + +
224A PRO* 5.9 1.8 - - - +
409A SER* 5.9 3.4 - - - +
424A PHE 3.3 10.4 + - - +
425A GLN* 3.7 9.4 - - - +
426A LEU 3.2 0.8 - - - -
427A ARG* 1.3 77.3 - - - +
429A VAL* 1.4 65.9 + - + +
431A GLY* 3.4 2.8 + - - -
432A GLN* 3.1 42.8 + - + +
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Residues in contact with VAL 429 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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249A LEU* 4.5 13.5 - - + -
409A SER* 3.9 38.1 - - - +
410A VAL* 4.6 0.8 - - + +
413A ILE* 4.6 15.5 - - + -
421A LEU* 3.7 22.7 - - + -
425A GLN 3.1 18.8 + - - +
426A LEU* 3.6 5.4 - - - +
428A LYS* 1.4 77.2 - - + +
430A TRP* 1.3 66.4 + - + +
432A GLN* 3.3 7.5 + - - +
433A VAL* 2.8 38.2 + - + +
587A SER* 4.1 5.2 - - - +
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Residues in contact with TRP 430 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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426A LEU* 2.9 35.7 + - + +
429A VAL* 1.3 77.1 - - + +
431A GLY* 1.3 59.3 + - - +
433A VAL* 3.4 2.5 + - + -
434A TRP* 2.8 30.5 + - - +
570A LEU* 3.8 36.8 - - + -
571A TYR* 3.8 13.9 - - + -
574A LEU* 3.7 39.7 - - + -
586A ASP 3.3 20.9 - - - -
587A SER* 3.1 36.9 + - - +
589A GLU* 5.1 7.4 - - + -
590A MET* 3.6 39.0 - - + +
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Residues in contact with GLY 431 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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114A CYS* 3.7 19.1 - - - -
115A CYS* 3.9 2.7 - - - -
427A ARG 3.3 9.2 + - - -
428A LYS 3.8 3.6 - - - -
430A TRP* 1.3 77.0 - - - +
432A GLN* 1.3 51.9 + - - +
434A TRP* 3.4 11.4 + - - -
435A HIS* 2.8 30.7 + - - +
571A TYR* 3.5 23.7 - - - -
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Residues in contact with GLN 432 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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115A CYS* 3.8 19.5 - - - -
219A PHE* 5.2 5.7 - - - -
261A TYR 4.9 0.7 - - - +
262A PRO* 4.0 21.7 - - + +
407A PRO* 3.9 10.2 - - + +
409A SER* 3.4 31.9 + - - -
410A VAL* 3.7 19.6 - - + +
428A LYS* 3.1 37.0 + - + +
429A VAL* 3.5 10.8 - - - +
430A TRP 3.3 0.2 - - - -
431A GLY* 1.3 73.0 - - - +
433A VAL* 1.4 58.7 + - - +
435A HIS* 3.2 2.8 + - - +
436A SER* 2.9 31.0 + - - -
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Residues in contact with VAL 433 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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410A VAL* 4.1 19.7 - - + -
413A ILE* 4.5 16.2 - - + -
429A VAL 2.8 26.6 + - - +
430A TRP* 3.9 5.4 - - + +
432A GLN* 1.4 69.9 - - - +
434A TRP* 1.4 65.3 + - - +
436A SER* 3.0 18.3 + - - -
437A ILE* 3.1 15.4 + - + +
587A SER* 6.3 0.7 - - - -
590A MET* 3.9 34.3 - - + +
591A VAL* 4.9 4.0 - - + +
594A LEU* 3.7 32.8 - - + -
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Residues in contact with TRP 434 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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111A PHE 4.5 1.6 - - - -
112A GLU* 3.6 35.7 - - + -
114A CYS* 3.7 23.3 - - - -
430A TRP 2.8 17.3 + - - +
431A GLY* 3.4 11.9 - - - +
433A VAL* 1.4 76.8 - - - +
435A HIS* 1.4 86.7 + + - +
437A ILE* 3.3 3.4 + - - +
438A GLN* 3.0 62.2 + - + -
564A GLU* 3.1 30.2 + - + +
567A ALA* 3.9 23.6 - - + +
568A ARG* 3.5 40.7 - - + +
571A TYR* 4.6 7.9 - + + -
590A MET* 4.4 2.1 - - + -
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Residues in contact with HIS 435 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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112A GLU 5.5 2.2 - - - -
115A CYS* 3.6 28.3 - - + +
116A GLY 5.9 0.2 - - - -
261A TYR* 5.3 2.7 - - - -
262A PRO* 3.3 29.7 - - + +
263A ASN 4.5 7.9 - - - -
264A ASN* 2.8 29.5 + - - -
431A GLY 2.8 20.4 + - - +
432A GLN 3.5 6.1 - - - +
433A VAL 3.2 0.4 - - - -
434A TRP* 1.4 87.1 - + + +
436A SER* 1.4 54.1 + - - +
438A GLN* 3.2 23.5 + - - +
439A THR* 2.8 49.8 + - - -
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Residues in contact with SER 436 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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406A GLN* 4.2 10.9 - - - +
407A PRO* 4.1 19.4 - - - +
410A VAL* 4.2 4.5 - - - +
432A GLN 2.9 14.3 + - - -
433A VAL* 3.0 12.5 + - - -
435A HIS* 1.4 76.1 + - - +
437A ILE* 1.3 57.0 + - - +
439A THR* 3.3 7.6 + - - -
440A LEU* 3.0 37.2 + - - +
594A LEU* 3.9 19.7 - - - -
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Residues in contact with ILE 437 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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433A VAL* 3.1 22.3 + - + +
434A TRP* 3.7 5.6 - - - +
436A SER* 1.3 71.9 - - - +
438A GLN* 1.4 58.8 + - - +
440A LEU* 3.1 9.6 + - - +
441A LYS* 2.9 28.1 + - - +
560A LEU* 4.8 5.2 - - + +
563A LEU 4.2 1.6 - - - +
564A GLU* 3.6 33.7 - - + +
567A ALA* 3.7 25.6 - - + -
593A LEU* 4.1 8.5 - - + +
594A LEU* 3.9 36.6 - - + +
597A ALA* 3.9 21.3 - - + -
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Residues in contact with GLN 438 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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112A GLU* 5.0 6.3 + - - +
264A ASN* 6.0 0.3 - - - -
434A TRP* 3.0 52.3 + - + +
435A HIS* 3.5 23.4 + - - +
437A ILE* 1.4 75.0 - - - +
439A THR* 1.4 53.0 + - - +
441A LYS* 3.4 7.3 - - + +
442A GLU* 2.8 63.6 + - + +
564A GLU* 4.0 22.0 + - + +
568A ARG* 5.1 4.4 - - - +
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Residues in contact with THR 439 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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261A TYR* 4.4 3.7 + - + +
404A ARG* 3.4 45.8 - - + +
435A HIS* 2.8 30.4 + - - -
436A SER* 3.4 11.8 - - - -
438A GLN* 1.4 74.8 + - - +
440A LEU* 1.4 56.9 + - + +
442A GLU* 4.3 9.2 + - - -
443A ASP* 2.7 46.2 + - - +
446A ARG* 5.6 0.7 - - - +
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Residues in contact with LEU 440 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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404A ARG* 5.5 15.3 - - + +
436A SER* 3.0 27.4 + - - +
437A ILE* 3.1 8.7 + - - +
439A THR* 1.4 77.2 - - + +
441A LYS* 1.4 55.6 + - - +
443A ASP* 4.5 2.5 - - - +
444A CYS* 2.9 32.2 + - - +
560A LEU* 4.2 9.0 - - + -
594A LEU* 4.3 9.0 - - + -
597A ALA* 3.7 16.2 - - + +
598A ILE* 3.7 44.2 - - + +
601A PHE* 3.3 31.2 - - + -
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Residues in contact with LYS 441 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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437A ILE 2.9 12.0 + - - +
438A GLN* 3.4 12.8 - - + +
440A LEU* 1.4 75.8 - - - +
442A GLU* 1.4 60.1 + - + +
444A CYS* 3.4 2.4 + - - +
445A ASN* 3.0 46.0 + - - +
560A LEU* 4.1 25.4 - - + +
561A ASP* 3.4 45.0 + - - +
564A GLU* 3.2 39.2 + - + -
568A ARG* 4.4 5.7 - - - +
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Residues in contact with GLU 442 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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383A ASP* 5.5 3.6 - - - +
438A GLN* 2.8 56.0 + - + +
439A THR* 3.8 7.6 + - + +
441A LYS* 1.4 74.0 - - + +
443A ASP* 1.4 62.6 + - - +
445A ASN* 3.1 11.6 + - - +
446A ARG* 3.1 38.2 + - - +
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Residues in contact with ASP 443 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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322A ILE* 6.3 0.4 - - - -
404A ARG* 3.4 43.3 + - - +
439A THR* 2.7 29.6 + - - +
440A LEU* 3.6 5.7 - - - +
442A GLU* 1.4 70.2 - - - +
444A CYS* 1.3 61.9 + - - +
446A ARG* 2.8 40.9 + - - +
447A LEU* 3.3 26.4 + - + +
601A PHE* 3.9 17.3 - - + -
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Residues in contact with CYS 444 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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440A LEU 2.9 17.4 + - - +
441A LYS 3.6 4.9 - - - +
443A ASP* 1.3 74.5 - - - +
445A ASN* 1.4 63.2 + - - +
447A LEU* 3.3 11.6 + - - +
448A GLN* 3.2 18.3 + - - +
560A LEU* 3.8 13.2 - - + -
601A PHE* 3.9 10.2 - - + -
604A LYS* 3.5 44.9 - - - -
605A VAL* 4.2 9.9 - - - -
608A ILE* 3.5 15.0 - - - +
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Residues in contact with ASN 445 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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441A LYS* 3.0 36.0 + - - +
442A GLU* 3.1 10.9 + - - +
444A CYS* 1.4 74.3 - - - +
446A ARG* 1.4 59.2 + - - +
448A GLN* 3.3 13.8 + - - +
449A GLN* 2.9 34.8 + - - +
561A ASP* 4.5 15.5 + - - +
604A LYS* 5.9 2.6 + - - +
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Residues in contact with ARG 446 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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315A LEU* 4.0 10.9 - - + +
322A ILE* 3.8 26.9 - - - +
382A LEU* 4.1 9.3 - - - +
383A ASP* 2.8 46.4 + - - +
386A LEU* 3.9 30.3 - - + -
388A PHE* 3.6 8.5 - - + -
404A ARG* 3.8 14.3 - - - +
439A THR* 5.6 0.4 - - - +
442A GLU* 3.1 20.6 + - - +
443A ASP* 2.8 45.4 + - - +
445A ASN* 1.4 71.7 - - - +
447A LEU* 1.4 60.3 + - + +
449A GLN* 3.3 15.3 + - - +
450A GLY* 3.0 22.3 + - - -
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Residues in contact with LEU 447 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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315A LEU* 4.8 6.7 - - + -
317A MET* 3.5 23.5 - - + +
320A GLY* 4.5 15.9 - - - -
443A ASP* 3.3 16.6 + - + +
444A CYS* 3.5 9.2 - - - +
445A ASN 3.3 0.4 - - - -
446A ARG* 1.4 74.1 - - + +
448A GLN* 1.3 59.1 + - - +
450A GLY* 3.1 2.9 + - - -
451A GLN* 3.0 25.6 + - - +
601A PHE* 4.8 6.1 - - + -
605A VAL* 3.7 37.2 - - + -
608A ILE* 3.8 15.6 - - + +
609A TYR* 3.4 29.2 - - + +
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Residues in contact with GLN 448 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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444A CYS* 3.2 10.2 + - - +
445A ASN* 3.3 17.7 + - - +
447A LEU* 1.3 74.2 - - - +
449A GLN* 1.3 53.3 + - - +
451A GLN* 3.3 15.0 + - - +
452A ARG* 2.8 79.4 + - - +
604A LYS* 6.2 5.0 - - + +
607A VAL* 5.8 3.2 - - - +
608A ILE* 3.7 30.4 - - + +
611A GLN* 5.2 7.3 + - - -
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Residues in contact with GLN 449 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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356A GLU* 4.6 25.0 - - + +
383A ASP* 4.5 21.1 + - - +
386A LEU* 5.3 3.0 - - - +
388A PHE* 3.9 23.7 - - + -
445A ASN* 2.9 19.8 + - - +
446A ARG* 3.4 16.9 - - - +
447A LEU 3.2 0.2 - - - -
448A GLN* 1.3 76.2 - - - +
450A GLY* 1.3 52.7 + - - +
452A ARG* 3.3 11.8 + - + +
453A ALA* 2.8 33.3 + - - +
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Residues in contact with GLY 450 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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317A MET* 3.9 15.7 - - - -
388A PHE* 3.4 27.5 - - - -
390A PHE* 3.2 21.3 - - - -
446A ARG 3.0 10.4 + - - -
447A LEU 3.1 5.3 + - - -
449A GLN* 1.3 74.5 - - - +
451A GLN* 1.3 61.9 + - - +
453A ALA* 3.4 2.0 + - - +
454A ALA 3.2 9.7 + - - -
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Residues in contact with GLN 451 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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317A MET* 4.0 1.2 - - + +
447A LEU 3.0 11.9 + - - +
448A GLN* 3.3 14.7 + - - +
450A GLY* 1.3 75.0 - - - +
452A ARG* 1.4 68.0 + - - +
454A ALA* 3.5 2.6 + - - +
455A MET* 3.0 40.8 + - - +
608A ILE* 3.7 33.4 - - + +
611A GLN* 3.8 24.3 + - + +
612A LEU* 3.9 21.8 - - + +
615A THR* 3.0 26.9 + - - -
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Residues in contact with ARG 452 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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356A GLU 4.8 2.5 - - - +
448A GLN* 2.8 56.8 + - - +
449A GLN* 3.3 12.2 + - + +
451A GLN* 1.4 80.3 + - - +
453A ALA* 1.4 55.7 + - - +
455A MET* 3.3 8.9 + - + +
456A MET* 2.8 44.8 + - + +
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Residues in contact with ALA 453 (chain A).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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354A LEU* 3.6 12.5 - - + +
355A GLN 3.5 21.5 - - - +
356A GLU 3.9 11.6 + - - +
358A GLY* 3.2 15.6 - - - +
388A PHE* 3.9 17.3 - - + -
390A PHE* 4.8 0.7 - - + -
449A GLN 2.8 17.0 + - - +
450A GLY 3.5 6.1 - - - +
451A GLN 3.3 0.2 - - - -
452A ARG* 1.4 75.5 - - - +
454A ALA* 1.4 56.2 + - - +
456A MET* 3.4 0.6 + - - -
457A ASN 3.0 22.3 + - - -
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Residues in contact with ALA 454 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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354A LEU* 4.0 4.2 - - - +
390A PHE* 3.8 17.5 - - + -
450A GLY 3.2 13.0 + - - +
451A GLN 3.7 7.9 - - - +
452A ARG 3.3 0.2 - - - -
453A ALA* 1.4 72.5 - - - +
455A MET* 1.4 59.4 + - - +
457A ASN* 3.5 0.9 + - - +
458A LEU* 3.0 27.7 + - - +
612A LEU* 3.9 12.1 - - + -
615A THR* 3.7 9.9 - - + -
616A VAL* 5.3 2.0 - - + -
619A LYS* 3.4 29.5 - - - +
----------------------------------------------------------
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Residues in contact with MET 455 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
451A GLN* 3.0 30.0 + - - +
452A ARG* 3.4 12.1 - - + +
454A ALA* 1.4 73.5 - - - +
456A MET* 1.3 61.7 + - + +
458A LEU* 3.3 19.3 + - - +
459A LEU* 2.9 55.8 + - + +
544A ILE* 5.2 2.7 - - - -
547A LEU* 3.7 39.0 - - + +
548A GLN* 4.4 11.9 - - + +
611A GLN* 5.1 0.9 - - - +
615A THR* 3.6 24.4 - - - +
----------------------------------------------------------
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Residues in contact with MET 456 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
356A GLU* 4.4 4.9 - - - +
357A ALA* 3.4 33.4 - - - +
452A ARG* 2.8 33.7 + - + +
453A ALA* 3.5 6.7 - - - +
455A MET* 1.3 75.9 - - + +
457A ASN* 1.4 56.1 + - - +
459A LEU* 3.5 23.5 + - + +
460A ARG* 3.1 37.1 + - - +
----------------------------------------------------------
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Residues in contact with ASN 457 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
352A GLU* 3.7 7.8 + - - +
354A LEU* 3.8 21.7 - - + +
358A GLY 3.2 24.0 + - - +
360A ALA* 4.7 8.5 - - - +
453A ALA 3.0 12.6 + - - +
454A ALA 3.7 8.3 - - - +
456A MET* 1.4 72.8 - - - +
458A LEU* 1.4 59.7 + - - +
460A ARG* 3.4 8.4 + - - +
461A ASN* 3.0 52.0 + - - +
619A LYS* 3.3 22.6 - - - +
----------------------------------------------------------
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Residues in contact with LEU 458 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
454A ALA 3.0 15.2 + - - +
455A MET* 3.3 22.6 + - - +
457A ASN* 1.4 76.2 + - - +
459A LEU* 1.3 53.2 + - - +
461A ASN* 3.2 5.2 + - - +
462A ASN* 2.8 34.9 + - + +
544A ILE* 4.2 27.4 - - + -
547A LEU* 4.5 4.0 - - + -
615A THR* 3.8 20.0 - - + -
618A CYS* 3.7 26.0 - - + +
619A LYS* 3.5 42.8 - - + +
622A ALA* 4.8 7.0 - - + -
----------------------------------------------------------
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Residues in contact with LEU 459 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
455A MET* 2.9 42.7 + - + +
456A MET* 3.9 24.5 - - + +
458A LEU* 1.3 74.4 - - - +
460A ARG* 1.3 57.0 + - - +
462A ASN* 3.8 12.3 + - - +
463A SER* 3.0 27.5 + - - -
544A ILE* 3.9 22.4 - - + -
548A GLN* 3.6 26.9 - - + +
----------------------------------------------------------
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Residues in contact with ARG 460 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
357A ALA* 2.9 31.7 + - - +
358A GLY 3.1 23.1 + - - -
359A LEU* 3.5 31.8 - - - +
456A MET* 3.1 34.7 + - - +
457A ASN* 3.5 8.3 - - - +
458A LEU 3.3 0.2 - - - -
459A LEU* 1.3 77.0 - - - +
461A ASN* 1.4 61.1 + - - +
463A SER* 3.3 19.2 - - - -
464A CYS* 3.5 16.6 - - - -
----------------------------------------------------------
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Residues in contact with ASN 461 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
457A ASN* 3.0 43.9 + - - +
458A LEU* 3.2 10.0 + - + +
460A ARG* 1.4 72.3 - - - +
462A ASN* 1.4 58.9 + - - +
463A SER 3.1 1.1 - - - -
464A CYS* 3.1 11.8 + - - +
465A LEU* 3.0 29.1 + - - +
619A LYS* 5.5 3.9 - - + +
622A ALA* 4.8 13.3 - - + +
623A LEU* 4.0 23.2 - - - +
626A LEU* 5.3 10.2 - - - +
----------------------------------------------------------
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Residues in contact with ASN 462 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
458A LEU* 2.8 21.7 + - + +
459A LEU* 3.8 13.5 + - - +
461A ASN* 1.4 70.7 - - - +
463A SER* 1.3 56.3 + - - +
465A LEU* 3.5 12.6 - - - +
466A SER* 2.9 36.0 + - - -
537A MET* 3.7 8.1 - - - +
540A LEU* 4.7 1.3 - - + +
541A GLN* 3.6 35.2 - - - +
544A ILE* 3.5 38.9 - - + +
622A ALA* 5.4 2.1 - - - +
----------------------------------------------------------
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Residues in contact with SER 463 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
459A LEU 3.0 13.5 + - - -
460A ARG* 3.3 15.9 - - - -
461A ASN 3.1 0.4 - - - -
462A ASN* 1.3 76.1 - - - +
464A CYS* 1.3 56.2 + - - +
466A SER* 3.2 8.0 + - - -
467A LYS* 2.9 57.7 + - - +
----------------------------------------------------------
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Residues in contact with CYS 464 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
460A ARG* 3.5 17.5 - - - -
461A ASN* 3.1 8.4 + - - +
463A SER* 1.3 71.8 - - - +
465A LEU* 1.3 55.8 + - - +
467A LYS* 3.3 19.2 + - - +
468A MET* 2.8 54.6 + - + +
626A LEU* 4.9 5.6 - - + -
----------------------------------------------------------
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Residues in contact with LEU 465 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
461A ASN 3.0 11.8 + - - +
462A ASN* 3.5 13.9 - - - +
464A CYS* 1.3 77.7 - - - +
466A SER* 1.3 50.9 + - - +
468A MET* 3.4 4.5 + - + +
469A LYS* 2.8 34.7 + - - +
537A MET* 3.5 29.6 - - + -
540A LEU* 3.9 12.6 - - + -
622A ALA* 3.8 33.0 - - + +
625A LEU* 4.2 10.3 - - + -
626A LEU* 3.7 44.3 - - + +
629A VAL* 4.8 10.7 - - + +
----------------------------------------------------------
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Residues in contact with SER 466 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
462A ASN* 2.9 19.9 + - - -
463A SER* 3.4 10.2 - - - -
465A LEU* 1.3 72.7 - - - +
467A LYS* 1.3 66.4 + - - +
469A LYS* 3.2 8.5 + - - +
470A ASN* 3.0 37.5 + - - -
537A MET* 3.4 17.9 - - - +
541A GLN* 3.5 16.4 + - - -
----------------------------------------------------------
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Residues in contact with LYS 467 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
463A SER* 2.9 41.6 + - - +
464A CYS* 3.6 19.1 - - - +
466A SER* 1.3 76.0 - - - +
468A MET* 1.3 60.5 + - + +
470A ASN* 3.7 10.4 + - - +
471A SER* 3.1 26.7 + - - -
----------------------------------------------------------
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Residues in contact with MET 468 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
464A CYS* 2.8 32.5 + - + +
465A LEU* 3.7 6.7 - - + +
467A LYS* 1.3 76.5 - - + +
469A LYS* 1.4 53.2 + - - +
471A SER* 3.1 9.1 + - - -
472A MET* 2.8 35.7 + - - +
626A LEU* 4.0 29.8 - - + +
629A VAL* 4.0 17.9 - - + +
630A GLU* 4.1 27.6 - - + +
633A VAL* 4.9 4.3 - - + +
----------------------------------------------------------
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Residues in contact with LYS 469 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
465A LEU 2.8 21.6 + - - +
466A SER* 3.2 8.6 + - - +
468A MET* 1.4 71.3 - - - +
470A ASN* 1.4 76.9 + - - +
472A MET* 3.3 27.3 + - + +
473A ALA* 2.8 37.5 + - + +
534A VAL* 5.0 15.5 - - + +
537A MET* 3.6 32.5 - - + -
538A MET* 6.3 0.7 - - + -
541A GLN* 4.0 15.2 + - - -
629A VAL* 4.5 3.3 - - + +
----------------------------------------------------------
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Residues in contact with ASN 470 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
466A SER* 3.0 25.9 + - - +
467A LYS* 3.9 9.8 - - - +
469A LYS* 1.4 93.2 + - - +
471A SER* 1.3 61.0 + - - +
473A ALA* 3.4 7.9 + - - +
474A SER* 2.8 32.5 + - - -
----------------------------------------------------------
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Residues in contact with SER 471 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
467A LYS 3.1 13.7 + - - -
468A MET* 3.1 14.5 + - - -
470A ASN* 1.3 76.1 - - - +
472A MET* 1.3 53.5 + - - +
474A SER* 3.3 4.7 + - - -
475A MET* 2.8 50.9 + - - +
633A VAL* 4.9 7.4 - - - -
----------------------------------------------------------
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Residues in contact with MET 472 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
468A MET 2.8 15.0 + - - +
469A LYS* 3.3 39.3 - - + +
471A SER* 1.3 71.4 - - - +
473A ALA* 1.4 56.0 + - - +
475A MET* 3.3 3.8 + - - +
476A SER* 2.9 31.9 + - - -
530A VAL* 3.8 28.3 - - + -
533A LEU* 4.1 33.7 - - + +
534A VAL* 4.0 19.1 - - + -
537A MET* 5.6 0.4 - - + -
629A VAL* 4.1 22.0 - - + +
632A VAL* 5.1 4.3 - - + -
633A VAL* 3.8 24.6 - - + +
636A MET* 4.3 2.5 - - - +
----------------------------------------------------------
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Residues in contact with ALA 473 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
469A LYS* 2.8 24.2 + - + +
470A ASN* 3.5 9.4 - - - +
472A MET* 1.4 72.9 - - - +
474A SER* 1.3 57.5 + - - +
476A SER* 3.4 6.8 + - - -
477A GLN* 3.1 47.1 + - - +
530A VAL* 5.0 5.2 - - - -
534A VAL* 5.7 6.1 - - + -
----------------------------------------------------------
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Residues in contact with SER 474 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
470A ASN 2.8 21.8 + - - -
471A SER* 3.5 5.8 - - - -
473A ALA* 1.3 69.3 - - - +
475A MET* 1.3 67.0 + - - +
477A GLN* 3.3 3.5 + - - +
478A GLN* 3.0 41.8 + - - +
477B GLN* 3.3 39.5 + - - +
480B LYS* 5.5 1.6 + - - -
----------------------------------------------------------
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Residues in contact with MET 475 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
471A SER* 2.8 45.9 + - - +
472A MET* 3.3 6.0 + - - +
474A SER* 1.3 79.7 - - - +
476A SER* 1.3 52.1 + - - +
478A GLN* 3.2 35.9 + - - +
479A LEU* 2.8 34.5 + - - +
633A VAL* 5.2 16.4 - - + +
636A MET* 4.3 17.8 - - + +
637A ASN* 6.0 4.5 - - + +
480B LYS* 6.2 0.2 - - - +
----------------------------------------------------------
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Residues in contact with SER 476 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
472A MET 2.9 17.8 + - - -
473A ALA* 3.5 7.0 - - - -
475A MET* 1.3 77.0 - - - +
477A GLN* 1.4 56.9 + - - +
479A LEU* 3.5 2.2 + - - +
480A LYS* 2.9 28.8 + - - +
527A GLU* 4.3 10.9 - - - +
530A VAL* 4.0 19.9 - - - +
636A MET* 3.2 30.4 - - - +
----------------------------------------------------------
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Residues in contact with GLN 477 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
473A ALA* 3.1 34.5 + - - +
474A SER 3.7 4.3 - - - +
475A MET 3.3 0.4 - - - -
476A SER* 1.4 74.8 - - - +
478A GLN* 1.3 63.6 + - - +
480A LYS* 3.4 20.9 + - - +
481A ALA* 3.1 18.4 + - - +
474B SER* 3.6 34.0 + - - +
477B GLN* 2.9 33.5 - - + +
478B GLN* 3.3 24.1 - - + +
----------------------------------------------------------
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Residues in contact with GLN 478 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
474A SER* 3.0 30.3 + - - +
475A MET* 3.2 39.5 - - - +
477A GLN* 1.3 71.3 - - - +
479A LEU* 1.3 60.2 + - - +
481A ALA 3.4 0.5 + - - -
482A LYS* 3.0 34.4 + - - +
640A GLU* 6.4 0.2 - - - -
477B GLN* 3.2 26.0 - - + +
480B LYS* 3.5 34.1 + - - +
481B ALA* 3.4 25.3 + - + +
----------------------------------------------------------
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Residues in contact with LEU 479 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
475A MET 2.8 17.8 + - - +
476A SER* 3.8 5.8 - - - +
477A GLN 3.3 0.2 - - - -
478A GLN* 1.3 74.1 - - - +
480A LYS* 1.3 64.4 + - - +
482A LYS* 3.2 6.0 + - + +
483A LEU* 2.9 44.7 + - + +
525A GLY* 3.6 28.5 - - - -
636A MET* 4.0 27.1 - - + +
639A ASP* 3.7 22.7 - - + +
640A GLU* 3.7 38.4 - - + +
643A VAL* 4.8 3.1 - - + -
----------------------------------------------------------
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Residues in contact with LYS 480 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
476A SER 2.9 18.3 + - - +
477A GLN* 3.4 19.5 + - - +
479A LEU* 1.3 74.4 - - - +
481A ALA* 1.3 56.5 + - - +
483A LEU* 3.7 9.4 - - - +
484A ASP* 3.0 36.5 + - - +
474B SER* 4.8 2.0 + - - -
478B GLN* 3.4 37.9 + - - +
----------------------------------------------------------
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Residues in contact with ALA 481 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
477A GLN 3.1 14.5 + - - +
478A GLN 3.5 9.4 - - - +
480A LYS* 1.3 72.8 - - - +
482A LYS* 1.4 64.4 + - - +
484A ASP* 3.4 8.0 + - - +
485A PHE* 3.1 23.7 + - - +
478B GLN* 3.4 41.2 - - + +
481B ALA* 3.7 5.8 - - + -
482B LYS* 3.8 16.2 + - + +
----------------------------------------------------------
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Residues in contact with LYS 482 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
478A GLN* 3.0 25.4 + - - +
479A LEU* 3.2 7.8 + - + +
481A ALA* 1.4 73.6 - - - +
483A LEU* 1.3 56.4 + - - +
485A PHE* 3.3 7.4 + - - +
486A PHE* 2.9 30.1 + - - +
640A GLU* 3.4 39.7 + - + +
643A VAL* 4.1 15.9 - - + +
644A VAL* 4.8 11.0 - - + +
481B ALA* 3.4 37.1 + - + +
482B LYS* 5.8 0.2 - - - -
484B ASP* 3.5 26.5 + - - +
485B PHE* 3.8 21.8 - - + +
----------------------------------------------------------
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Residues in contact with LEU 483 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
479A LEU* 2.9 42.4 + - + +
480A LYS* 3.7 8.3 - - - +
482A LYS* 1.3 73.2 - - - +
484A ASP* 1.3 53.7 - - - +
486A PHE* 3.4 5.4 + - - +
487A LYS* 2.8 54.2 + - - +
521A VAL* 3.1 42.6 - - + +
524A CYS* 3.9 23.1 - - - +
525A GLY* 4.0 8.1 - - - -
527A GLU* 5.9 0.4 - - - +
643A VAL* 3.6 15.5 - - + -
----------------------------------------------------------
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Residues in contact with ASP 484 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
480A LYS* 3.0 24.5 + - - +
481A ALA* 3.4 8.3 - - - +
483A LEU* 1.3 74.8 - - - +
485A PHE* 1.3 57.8 + - - +
487A LYS* 3.4 9.0 + - - +
488A THR* 3.0 38.3 + - - -
478B GLN* 5.8 1.4 + - - -
482B LYS* 3.9 16.9 + - - +
----------------------------------------------------------
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Residues in contact with PHE 485 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
481A ALA 3.1 12.4 + - - +
482A LYS* 3.5 8.1 - - - +
484A ASP* 1.3 73.7 - - - +
486A PHE* 1.3 54.9 + - - +
488A THR* 3.3 16.7 + - + -
489A SER* 2.8 34.6 + - - -
482B LYS* 3.7 48.4 - - + +
485B PHE* 3.3 42.0 - + + -
486B PHE* 4.7 17.0 - + + -
----------------------------------------------------------
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Residues in contact with PHE 486 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
482A LYS 2.9 17.6 + - - +
483A LEU* 3.7 5.2 - - - +
485A PHE* 1.3 74.6 - - - +
487A LYS* 1.4 61.2 + - + +
489A SER* 3.3 0.5 + - - -
490A ILE* 2.9 59.1 + - + +
517A MET* 4.1 10.1 - - + -
518A GLU* 4.7 1.3 - - - -
521A VAL* 3.6 34.3 - - + -
643A VAL* 3.7 27.1 - - + -
646A LEU* 3.6 19.7 - - + -
647A GLN* 3.3 37.5 - - + -
650A ARG* 3.3 23.6 - - - -
485B PHE* 3.8 8.9 - - + -
----------------------------------------------------------
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Residues in contact with LYS 487 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
483A LEU* 2.8 35.3 + - + +
484A ASP* 3.6 7.9 - - - +
486A PHE* 1.4 76.0 - - + +
488A THR* 1.3 62.0 + - - +
490A ILE* 3.4 9.8 - - + +
491A GLN* 3.1 25.6 + - - +
518A GLU* 5.3 6.0 - - + +
521A VAL* 3.7 36.7 + - + -
522A GLU* 3.2 40.2 + - - +
524A CYS 5.1 1.2 + - - -
----------------------------------------------------------
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Residues in contact with THR 488 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
484A ASP* 3.0 21.0 + - - -
485A PHE* 3.4 24.5 - - + +
487A LYS* 1.3 73.6 - - - +
489A SER* 1.3 66.8 + - - +
491A GLN* 3.3 12.1 + - - +
492A ILE* 3.2 37.8 + - + +
----------------------------------------------------------
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Residues in contact with SER 489 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
485A PHE* 2.8 22.7 + - - -
486A PHE* 3.6 2.7 - - - -
488A THR* 1.3 71.9 - - - +
490A ILE* 1.3 61.2 + - - +
492A ILE* 3.1 15.9 + - - +
493A ASP* 3.1 25.6 + - - -
647A GLN* 2.9 22.5 + - - -
650A ARG* 2.8 22.7 + - - -
485B PHE* 4.4 4.9 - - - -
----------------------------------------------------------
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Residues in contact with ILE 490 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
486A PHE* 2.9 32.5 + - + +
487A LYS* 3.4 13.0 - - + +
489A SER* 1.3 71.1 - - - +
491A GLN* 1.3 61.3 + - - +
493A ASP* 3.3 0.7 + - - -
494A LEU* 2.9 43.3 + - + +
514A TRP 3.4 24.5 - - - +
517A MET* 3.6 19.3 - - + -
518A GLU* 3.8 28.3 - - + +
650A ARG* 3.2 41.2 - - - +
----------------------------------------------------------
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Residues in contact with GLN 491 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
487A LYS 3.1 20.5 + - - +
488A THR* 3.6 14.3 - - - +
489A SER 3.3 0.4 - - - -
490A ILE* 1.3 78.1 - - - +
492A ILE* 1.4 71.8 + - - +
494A LEU* 3.4 8.9 + - - +
495A GLU* 2.8 50.4 + - - +
518A GLU* 4.7 6.5 - - - +
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Residues in contact with ILE 492 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
488A THR* 3.2 32.0 + - + +
489A SER* 3.1 9.5 + - - +
491A GLN* 1.4 88.6 - - - +
493A ASP* 1.3 63.7 + - - +
495A GLU* 3.2 4.6 + - - +
496A LYS* 2.9 46.7 + - + +
----------------------------------------------------------
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Residues in contact with ASP 493 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
489A SER* 3.1 14.3 + - - +
490A ILE 3.3 6.7 + - - +
492A ILE* 1.3 82.4 - - - +
494A LEU* 1.4 58.4 + - - +
496A LYS* 4.1 2.8 - - - +
497A TYR* 3.2 26.2 + - - +
514A TRP* 3.7 19.8 - - + -
650A ARG* 2.8 42.4 + - - +
651A GLN* 5.6 4.5 + - - +
654A LEU* 4.1 24.3 - - - +
----------------------------------------------------------
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Residues in contact with LEU 494 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
490A ILE* 2.9 34.6 + - + +
491A GLN* 3.8 4.9 - - - +
493A ASP* 1.4 72.2 - - - +
495A GLU* 1.3 65.2 + - - +
497A TYR* 3.8 6.2 - - + +
498A SER* 3.2 24.8 + - - -
511A LEU* 4.4 13.8 - - + +
514A TRP* 3.8 30.1 - - + -
515A ARG* 3.7 39.6 + - - +
518A GLU* 3.3 37.9 - - + +
----------------------------------------------------------
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Residues in contact with GLU 495 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
491A GLN* 2.8 41.2 + - - +
492A ILE* 3.5 5.2 - - - +
494A LEU* 1.3 75.9 - - - +
496A LYS* 1.3 68.0 + - + +
498A SER* 2.8 21.6 + - - +
499A GLU* 3.1 35.5 + - + +
----------------------------------------------------------
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Residues in contact with LYS 496 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
492A ILE* 2.9 35.7 + - + +
493A ASP* 4.6 2.7 - - - +
495A GLU* 1.3 74.2 - - + +
497A TYR* 1.4 64.3 + - - +
499A GLU* 3.8 23.1 + - + +
500A GLN* 3.5 19.4 + - - +
----------------------------------------------------------
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Residues in contact with TYR 497 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
493A ASP 3.2 20.4 + - - +
494A LEU* 3.8 5.8 - - + +
495A GLU 3.2 0.4 - - - -
496A LYS* 1.4 72.8 - - - +
498A SER* 1.4 71.2 + - - +
499A GLU 3.1 0.9 - - - -
500A GLN* 2.9 56.1 + - - +
501A THR* 4.1 3.2 + - - -
508A ASP* 3.9 26.3 + - - +
510A LEU* 5.0 10.8 - - + +
511A LEU* 3.7 45.9 + - + -
514A TRP* 4.3 18.2 - + + -
657A LEU* 4.9 21.1 - - + -
----------------------------------------------------------
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Residues in contact with SER 498 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
494A LEU 3.2 11.5 + - - -
495A GLU* 2.8 23.0 + - - +
497A TYR* 1.4 86.7 - - - +
499A GLU* 1.3 58.6 + - - +
501A THR* 2.8 24.8 + - - -
511A LEU* 5.1 7.9 - - - -
----------------------------------------------------------
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Residues in contact with GLU 499 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
495A GLU* 3.1 45.0 + - + +
496A LYS* 3.8 24.2 + - + +
497A TYR 3.1 0.4 - - - -
498A SER* 1.3 83.8 + - - +
500A GLN* 1.4 55.3 + - - +
501A THR* 3.4 6.4 + - - +
----------------------------------------------------------
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Residues in contact with GLN 500 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
496A LYS 3.5 10.0 + - - +
497A TYR* 2.9 40.7 + - - +
499A GLU* 1.4 73.8 - - - +
501A THR* 1.3 60.2 + - - +
657A LEU* 5.1 11.9 - - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il