Contacts of the helix formed by residues 742 - 794 (chain A) in PDB entry 4KSC
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with GLU 742 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
740A PRO 3.7 0.6 + - - -
741A PRO* 1.3 79.0 - - + +
743A THR* 1.3 63.5 + - - +
744A GLN* 3.2 5.2 + - - +
745A ARG* 3.3 22.9 + - - +
746A GLN* 3.3 34.4 + - + +
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Residues in contact with THR 743 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
83A ASN* 5.7 2.9 - - - +
318A ILE* 4.2 19.8 - - - +
734A VAL 5.5 5.4 - - - +
735A PHE* 5.5 14.8 - - + +
738A GLY 5.5 2.9 - - - +
739A GLY 3.1 28.0 - - - +
740A PRO* 2.7 20.4 + - + +
741A PRO 2.9 4.2 + - - +
742A GLU* 1.3 75.8 - - - +
744A GLN* 1.3 62.5 + - - +
746A GLN* 4.3 2.5 - - - +
747A ASN* 2.7 39.5 + - - +
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Residues in contact with GLN 744 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
311A TRP* 4.7 10.3 - - - -
318A ILE* 3.3 35.3 - - + +
319A SER* 5.2 5.7 + - - -
742A GLU* 3.2 1.3 - - - -
743A THR* 1.3 82.2 + - - +
745A ARG* 1.3 55.3 + - - +
747A ASN* 3.9 0.9 - - - +
748A SER* 2.3 49.0 + - - +
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Residues in contact with ARG 745 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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742A GLU* 3.3 24.8 + - - +
744A GLN* 1.3 78.4 - - - +
746A GLN* 1.3 62.4 + - + +
748A SER* 3.1 11.5 + - - -
749A ASN* 2.7 58.5 + - + +
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Residues in contact with GLN 746 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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730A LYS* 4.6 16.6 + - - -
734A VAL* 4.2 35.5 - - + +
742A GLU* 3.3 26.4 + - + +
743A THR* 4.3 3.4 - - - +
745A ARG* 1.3 82.9 - - + +
747A ASN* 1.3 60.0 + - - +
749A ASN* 3.3 8.2 + - - +
750A LEU* 2.9 39.9 + - + +
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Residues in contact with ASN 747 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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311A TRP* 4.7 4.0 - - + -
314A THR* 5.1 11.9 - - + -
318A ILE* 4.0 10.4 - - + +
731A VAL* 3.8 29.2 + - + +
734A VAL* 4.2 10.3 - - - +
735A PHE* 3.1 42.2 - - - -
743A THR* 2.7 24.5 + - - +
744A GLN* 4.0 2.2 - - - +
745A ARG 3.3 0.2 - - - -
746A GLN* 1.3 75.3 - - - +
748A SER* 1.3 57.6 + - - +
750A LEU* 4.2 3.9 - - - +
751A PHE* 2.9 32.4 + - - +
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Residues in contact with SER 748 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
311A TRP* 3.8 22.7 - - - -
744A GLN* 2.3 45.6 + - - +
745A ARG* 3.4 13.0 - - - -
747A ASN* 1.3 77.5 - - - +
749A ASN* 1.3 62.6 + - - +
751A PHE* 3.4 4.0 + - - +
752A SER* 3.2 23.7 + - - -
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Residues in contact with ASN 749 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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730A LYS* 5.8 0.2 + - - -
745A ARG* 2.7 44.8 + - + +
746A GLN* 3.6 8.7 + - - +
748A SER* 1.3 74.2 - - - +
750A LEU* 1.3 73.7 + - - +
752A SER* 3.8 5.6 + - - -
753A LEU* 3.2 26.9 + - - +
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Residues in contact with LEU 750 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
727A ILE* 3.6 13.3 - - + +
730A LYS* 3.6 52.3 - - + +
731A VAL* 3.7 36.1 - - + +
734A VAL* 4.8 5.2 - - + -
746A GLN* 2.9 26.9 + - + +
747A ASN* 4.2 2.0 - - - +
749A ASN* 1.3 90.7 - - - +
751A PHE* 1.3 61.3 + - - +
753A LEU* 3.0 23.1 + - + +
754A LEU* 2.8 26.0 + - - +
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Residues in contact with PHE 751 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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307A ALA* 3.3 44.6 - - + +
308A LEU* 5.5 1.3 - - - -
310A PHE* 5.4 3.4 - - + -
311A TRP* 3.4 57.4 - + + -
731A VAL* 5.0 3.5 - - - +
747A ASN 2.9 20.6 + - - +
748A SER 3.6 4.0 - - - +
750A LEU* 1.3 76.4 - - - +
752A SER* 1.3 68.5 + - - +
754A LEU* 3.2 18.6 + - + +
755A PHE* 3.4 14.7 + + + +
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Residues in contact with SER 752 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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748A SER 3.2 12.3 + - - -
749A ASN* 4.0 6.1 - - - -
751A PHE* 1.3 88.5 - - - +
753A LEU* 1.3 62.5 + - - +
755A PHE* 3.2 9.5 + - - +
756A LEU* 3.1 38.5 + - - +
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Residues in contact with LEU 753 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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727A ILE* 3.3 23.1 - - + +
749A ASN* 3.2 18.1 + - - +
750A LEU* 3.0 31.7 + - + +
752A SER* 1.3 79.6 - - - +
754A LEU* 1.3 60.9 + - - +
756A LEU* 4.0 17.0 - - + +
757A ILE* 3.1 51.6 + - + +
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Residues in contact with LEU 754 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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303A TYR* 4.7 7.0 - - + +
306A TYR* 4.5 14.8 - - + -
307A ALA* 4.5 21.3 - - + -
310A PHE* 5.4 5.8 - - + -
724A PHE* 4.1 35.9 - - + -
727A ILE* 3.6 27.8 - - + +
728A PHE* 4.3 15.0 - - + +
731A VAL* 5.3 4.5 - - + -
750A LEU 2.8 14.7 + - - +
751A PHE* 3.2 12.3 + - + +
753A LEU* 1.3 74.1 - - - +
755A PHE* 1.3 63.2 + - - +
758A LEU* 3.6 25.5 + - + +
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Residues in contact with PHE 755 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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304A ALA* 5.0 21.3 - - + -
307A ALA* 5.5 9.6 - - + -
751A PHE* 3.4 13.2 + + + +
752A SER* 3.2 12.3 + - - +
753A LEU 3.2 0.8 - - - -
754A LEU* 1.3 79.5 - - - +
756A LEU* 1.3 65.1 + - + +
758A LEU 3.1 1.2 + - - -
759A GLY* 2.5 44.7 + - - +
760A ILE* 3.4 24.9 - - + -
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Residues in contact with LEU 756 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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752A SER* 3.1 37.1 + - - +
753A LEU* 3.9 15.0 - - + +
755A PHE* 1.3 81.2 - - + +
757A ILE* 1.3 96.0 + - + +
758A LEU 3.4 0.3 + - - -
760A ILE* 3.3 41.4 - - + +
761A ILE* 3.3 11.3 + - + +
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Residues in contact with ILE 757 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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720A LEU* 3.3 26.7 - - + +
723A ALA* 4.0 23.6 - - + -
727A ILE* 4.0 9.6 - - + -
753A LEU* 3.1 39.4 + - + +
754A LEU 4.8 0.4 - - - +
756A LEU* 1.3 93.0 - - + +
758A LEU* 1.3 62.0 + - + +
761A ILE* 3.1 33.3 - - + +
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Residues in contact with LEU 758 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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300A LEU* 4.9 0.7 - - + -
303A TYR* 4.1 30.3 - - + -
720A LEU* 4.0 30.1 - - + +
721A GLN* 5.2 3.6 - - - +
724A PHE* 3.5 43.7 - - + -
727A ILE* 6.0 0.2 - - + -
754A LEU* 3.6 21.5 + - + +
755A PHE 3.1 1.6 + - - -
757A ILE* 1.3 86.4 - - + +
759A GLY* 1.3 66.3 + - - +
760A ILE 3.2 2.0 - - - -
761A ILE 3.0 0.7 + - - -
762A SER* 2.4 43.7 + - - -
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Residues in contact with GLY 759 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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300A LEU* 3.6 35.2 - - - +
303A TYR* 6.1 1.3 - - - +
755A PHE* 2.5 29.0 + - - +
758A LEU* 1.3 76.3 - - - +
760A ILE* 1.3 63.9 + - - +
763A PHE* 3.6 10.2 - - - +
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Residues in contact with ILE 760 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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755A PHE* 3.4 33.4 - - + -
756A LEU* 3.3 31.0 + - + +
758A LEU 3.2 0.2 - - - -
759A GLY* 1.3 78.1 - - - +
761A ILE* 1.3 69.2 + - + +
763A PHE* 4.3 1.2 - - - +
764A ILE* 3.2 33.2 + - + +
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Residues in contact with ILE 761 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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716A ILE* 5.1 8.5 - - + -
720A LEU* 3.6 26.7 - - + -
756A LEU* 3.3 12.3 + - + +
757A ILE* 3.1 37.2 - - + +
758A LEU 3.0 1.4 + - - -
760A ILE* 1.3 83.8 - - + +
762A SER* 1.3 61.2 + - - +
764A ILE* 3.0 8.1 + - + +
765A THR* 2.9 36.5 + - + +
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Residues in contact with SER 762 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
296A GLY* 5.7 1.7 + - - -
299A PHE* 5.4 6.9 - - - +
300A LEU* 4.9 6.5 - - - +
717A ASN* 4.3 7.4 + - - -
720A LEU* 3.7 13.1 - - - +
758A LEU* 2.4 44.2 + - - -
761A ILE* 1.3 68.6 - - - +
763A PHE* 1.3 54.8 + - - -
765A THR* 3.3 9.8 - - - +
766A PHE* 2.9 39.4 + - - +
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Residues in contact with PHE 763 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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292A ASN 4.1 1.6 - - - -
293A ILE* 3.4 52.7 - - + -
296A GLY* 3.7 20.2 - - - -
297A ALA* 3.9 6.5 - - + -
300A LEU* 3.7 24.7 - - + +
758A LEU 3.9 2.2 + - - -
759A GLY 3.6 17.7 + - - +
760A ILE 4.3 1.8 - - - +
761A ILE 3.3 0.4 - - - -
762A SER* 1.3 77.6 - - - +
764A ILE* 1.3 63.7 + - + +
766A PHE* 4.0 2.2 - - - +
767A PHE* 3.0 34.3 + + + +
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Residues in contact with ILE 764 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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760A ILE* 3.2 22.6 + - + +
761A ILE* 3.0 12.2 + - + +
763A PHE* 1.3 82.3 - - + +
765A THR* 1.3 56.6 + - - +
767A PHE* 3.2 7.7 + - + +
768A LEU* 2.6 49.8 + - + +
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Residues in contact with THR 765 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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713A CYS* 2.5 46.2 + - - -
714A ALA* 4.8 0.2 - - - -
716A ILE* 3.7 14.8 - - + -
717A ASN* 3.2 30.3 - - + +
720A LEU* 4.5 3.4 - - + -
761A ILE* 2.9 25.7 + - + +
762A SER* 3.3 10.8 - - - +
764A ILE* 1.3 76.3 - - - +
766A PHE* 1.3 60.4 + - - +
768A LEU* 3.9 1.1 - - - -
769A GLN* 2.8 29.2 + - - +
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Residues in contact with PHE 766 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
292A ASN* 3.1 43.4 + - - -
295A MET* 3.4 39.9 - - + -
296A GLY* 4.0 10.1 - - - -
299A PHE* 6.0 2.9 - + - -
717A ASN* 4.3 9.6 - - - +
762A SER* 2.9 23.7 + - - +
763A PHE* 4.0 3.8 - - - +
765A THR* 1.3 79.5 - - - +
767A PHE* 1.3 55.9 + - - +
769A GLN* 3.1 38.1 - - - +
770A GLY* 3.1 10.9 + - - -
773A PHE* 6.0 1.3 - + - -
833A PHE* 6.3 1.8 - + - -
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Residues in contact with PHE 767 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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289A ILE* 3.5 36.8 - - + -
292A ASN* 4.2 9.2 - - + +
293A ILE* 3.4 39.7 - - + -
763A PHE* 3.0 31.6 + + + +
764A ILE* 3.9 6.1 - - + +
766A PHE* 1.3 76.5 - - - +
768A LEU* 1.3 65.8 + - + +
770A GLY* 4.0 0.3 - - - -
771A PHE* 3.2 33.9 + + + +
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Residues in contact with LEU 768 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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709A VAL* 4.8 16.2 - - + -
713A CYS* 3.5 27.6 - - + -
764A ILE* 2.6 33.3 + - + +
765A THR* 3.9 0.4 - - - -
767A PHE* 1.3 75.7 - - + +
769A GLN* 1.3 64.9 + - - +
771A PHE* 3.5 10.1 + - + +
772A THR* 3.1 28.6 + - + +
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Residues in contact with GLN 769 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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710A GLY 3.9 15.0 - - - +
713A CYS* 3.8 5.5 - - - -
714A ALA* 3.4 30.5 - - - +
717A ASN* 3.3 25.3 + - - +
765A THR 2.8 18.1 + - - +
766A PHE* 3.1 30.9 - - + +
768A LEU* 1.3 69.8 - - - +
770A GLY* 1.3 64.2 + - - +
772A THR* 2.3 38.2 + - - -
773A PHE* 2.8 34.9 + - + -
829A LEU* 5.2 4.0 + - - +
833A PHE* 5.1 5.4 - - - +
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Residues in contact with GLY 770 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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288A ALA* 4.3 6.9 - - - +
289A ILE* 5.7 0.7 - - - -
292A ASN* 3.0 31.8 - - - +
766A PHE 3.1 4.4 + - - -
767A PHE 4.0 0.9 - - - -
768A LEU 3.3 0.2 - - - -
769A GLN* 1.3 83.4 - - - +
771A PHE* 1.3 57.0 + - - +
773A PHE* 3.4 15.9 - - - -
774A GLY* 3.0 27.5 + - - -
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Residues in contact with PHE 771 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
285A ILE* 4.4 15.5 - - + +
289A ILE* 4.2 34.5 - - + +
767A PHE* 3.2 31.2 + + + +
768A LEU* 3.8 13.2 - - + +
769A GLN 3.2 0.6 - - - -
770A GLY* 1.3 76.5 - - - +
772A THR* 1.3 67.6 + - + +
775A LYS* 3.5 39.0 + - + +
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Residues in contact with THR 772 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
707A PHE* 3.5 25.2 - - + -
709A VAL* 4.1 17.3 - - + -
710A GLY* 3.2 36.7 - - - +
768A LEU* 3.1 19.3 - - + +
769A GLN* 2.3 28.2 + - - +
771A PHE* 1.3 82.9 - - + +
773A PHE* 1.3 62.2 + - - -
774A GLY 3.1 4.0 - - - -
775A LYS* 3.1 4.5 + - - +
776A ALA* 2.8 25.5 + - - +
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Residues in contact with PHE 773 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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288A ALA* 6.3 1.1 - - + -
292A ASN* 4.2 15.0 - - - -
707A PHE* 5.6 0.2 - - - -
766A PHE* 6.0 1.3 - + - -
769A GLN* 2.8 59.4 + - + -
770A GLY* 3.4 12.8 - - - -
772A THR* 1.3 76.8 + - - +
774A GLY* 1.3 69.8 + - - +
776A ALA* 3.5 11.9 - - + +
777A GLY* 3.1 18.2 + - - -
825A THR* 5.6 2.6 - - + +
826A GLY* 5.2 15.0 - - - -
829A LEU* 3.5 44.6 - - + -
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Residues in contact with GLY 774 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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284A GLY 6.0 0.3 - - - -
285A ILE* 5.4 3.2 - - - -
288A ALA* 4.2 20.7 - - - +
770A GLY 3.0 21.6 + - - -
773A PHE* 1.3 86.2 - - - +
775A LYS* 1.3 56.9 + - - +
777A GLY* 3.5 1.2 + - - -
778A GLU* 3.1 25.6 + - - +
822A LYS* 5.5 4.2 - - - -
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Residues in contact with LYS 775 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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281A LYS* 6.3 0.7 - - - -
285A ILE* 4.4 18.8 - - + +
707A PHE* 3.9 25.7 - - + -
770A GLY 4.3 0.2 + - - -
771A PHE* 3.5 42.5 + - + +
772A THR* 3.1 2.9 + - - +
774A GLY* 1.3 73.1 - - - +
776A ALA* 1.3 64.9 + - - +
778A GLU* 3.2 23.8 - - - +
779A ILE* 3.1 34.9 + - + +
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Residues in contact with ALA 776 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
704A TRP* 3.9 26.4 - - + +
707A PHE* 4.3 13.8 - - + -
772A THR 2.8 16.5 + - - +
773A PHE* 3.5 15.0 - - + +
774A GLY 3.2 0.2 - - - -
775A LYS* 1.3 78.2 - - - +
777A GLY* 1.3 61.1 + - - +
779A ILE* 3.5 5.9 - - - +
780A LEU* 3.4 26.3 + - + +
825A THR* 5.1 11.0 - - + -
829A LEU* 6.2 0.2 - - + -
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Residues in contact with GLY 777 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
773A PHE 3.1 11.3 + - - -
774A GLY 3.9 2.2 - - - -
776A ALA* 1.3 79.0 - - - +
778A GLU* 1.3 58.9 + - - +
780A LEU* 3.6 12.2 + - - +
781A THR* 2.9 28.1 + - - -
822A LYS* 4.4 29.3 - - - +
825A THR* 5.4 5.5 - - - +
----------------------------------------------------------
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Residues in contact with GLU 778 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
281A LYS* 2.7 73.4 - - + +
282A ARG* 3.8 0.7 + - - +
284A GLY* 5.2 2.2 - - - -
285A ILE* 3.2 31.1 - - + +
774A GLY 3.1 13.8 + - - +
775A LYS* 3.2 34.3 - - - +
776A ALA 3.1 0.4 - - - -
777A GLY* 1.3 77.7 - - - +
779A ILE* 1.3 62.5 + - - +
781A THR* 3.3 19.7 + - - -
782A LYS 3.7 3.6 + - - -
822A LYS* 5.4 3.3 - - - +
----------------------------------------------------------
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Residues in contact with ILE 779 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
281A LYS* 4.7 18.6 - - + -
703A GLU 4.4 7.0 - - - +
704A TRP* 5.1 3.1 - - + -
705A PRO* 4.3 24.5 - - + -
707A PHE* 4.9 13.9 - - + -
775A LYS* 3.1 24.8 + - + +
776A ALA 3.5 11.7 - - - +
778A GLU* 1.3 73.8 - - + +
780A LEU* 1.3 71.4 + - + +
782A LYS* 3.2 12.0 + - - +
783A ARG* 3.2 37.5 + - + +
----------------------------------------------------------
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Residues in contact with LEU 780 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
700A ASN* 4.4 23.3 - - + +
703A GLU* 4.0 36.1 - - + +
704A TRP* 4.9 9.0 - - + +
776A ALA* 3.4 16.1 + - + +
777A GLY* 3.7 13.0 - - - +
778A GLU 3.2 0.2 - - - -
779A ILE* 1.3 82.6 - - + +
781A THR* 1.3 64.1 + - - +
783A ARG* 4.7 2.0 - - - +
784A LEU* 3.0 47.1 + - + +
821A VAL* 5.2 13.5 - - + +
822A LYS* 6.1 1.8 - - - -
825A THR* 3.7 26.9 - - + +
----------------------------------------------------------
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Residues in contact with THR 781 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
277A LEU* 4.7 2.4 - - + +
281A LYS* 6.3 0.2 - - - -
777A GLY 2.9 16.2 + - - -
778A GLU* 3.5 10.5 + - - -
779A ILE 3.3 0.4 - - - -
780A LEU* 1.3 77.2 - - - +
782A LYS* 1.3 63.6 + - - +
785A ARG* 3.3 56.8 + - - +
818A ALA* 3.8 26.1 + - + +
819A ALA* 5.9 0.4 - - - -
821A VAL* 6.1 0.2 - - - +
822A LYS* 4.4 10.8 - - + +
----------------------------------------------------------
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Residues in contact with LYS 782 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
274A ASN* 4.3 9.4 + - + +
277A LEU* 3.6 47.9 - - + +
278A GLU* 2.3 40.7 + - - +
281A LYS* 4.1 25.9 - - + +
778A GLU 3.7 2.1 + - - +
779A ILE* 3.2 14.7 + - - +
780A LEU 3.1 1.0 - - - -
781A THR* 1.3 77.9 - - - +
783A ARG* 1.3 59.2 + - + +
784A LEU 3.1 0.5 + - - -
785A ARG* 3.1 2.8 + - - +
786A TYR* 2.6 38.8 + - + +
----------------------------------------------------------
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Residues in contact with ARG 783 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
703A GLU* 4.0 43.4 + - - +
705A PRO* 5.1 11.2 - - - +
779A ILE* 3.2 27.2 + - + +
780A LEU* 4.3 3.4 - - - +
782A LYS* 1.3 80.9 - - + +
784A LEU* 1.3 56.9 + - + +
786A TYR* 3.8 15.8 - - + -
787A MET* 2.7 48.5 + - + +
----------------------------------------------------------
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Residues in contact with LEU 784 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
700A ASN* 5.6 4.0 - - - +
703A GLU* 3.7 32.5 - - - +
780A LEU* 3.0 40.8 + - + +
781A THR* 4.4 3.1 - - - +
783A ARG* 1.3 78.9 - - + +
785A ARG* 1.3 57.6 + - - +
787A MET* 3.7 2.2 - - - +
788A VAL* 2.9 37.3 + - + +
818A ALA* 4.9 6.3 - - + -
821A VAL* 4.8 14.8 - - + -
1004A ILE* 3.6 37.7 - - + +
1008A ILE* 5.2 9.6 - - + -
----------------------------------------------------------
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Residues in contact with ARG 785 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
243A TYR* 3.4 35.5 - - - +
273A TYR* 3.2 34.6 - - + +
277A LEU* 4.0 15.0 - - + +
280A ALA* 5.7 3.2 - - - +
781A THR* 3.3 38.5 + - - +
782A LYS 3.1 2.3 + - - +
784A LEU* 1.3 77.9 - - - +
786A TYR* 1.3 60.9 + - - +
788A VAL* 4.4 1.6 - - - -
789A PHE* 3.1 18.9 + - - +
814A LEU* 2.6 37.7 + - + +
815A ALA* 3.3 28.5 + - - +
818A ALA* 3.3 15.0 - - + +
819A ALA* 4.5 5.9 - - - +
1004A ILE* 5.6 1.6 - - + -
----------------------------------------------------------
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Residues in contact with TYR 786 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
270A LEU* 6.2 0.2 - - + -
273A TYR* 4.2 7.6 - - - -
274A ASN* 3.0 34.5 - - - +
277A LEU* 4.7 0.9 - - + -
782A LYS* 2.6 24.6 + - + +
783A ARG* 3.4 16.2 - - + +
785A ARG* 1.3 73.6 - - - +
787A MET* 1.3 80.8 + - + +
788A VAL 3.1 6.1 + - - -
790A LYS* 3.0 66.3 + - + +
----------------------------------------------------------
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Residues in contact with MET 787 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
703A GLU* 3.6 26.5 - - - +
783A ARG* 2.7 28.7 + - - +
784A LEU* 3.7 1.8 - - - +
786A TYR* 1.3 90.7 - - + +
788A VAL* 1.3 56.7 + - - +
790A LYS* 4.8 4.0 - - - -
791A SER* 3.0 24.5 + - - -
794A ARG* 4.1 5.9 + - - +
1008A ILE* 3.2 32.6 - - + +
----------------------------------------------------------
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Residues in contact with VAL 788 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
784A LEU* 2.9 20.8 + - + +
785A ARG* 4.0 6.3 - - - +
787A MET* 1.3 77.1 - - - +
789A PHE* 1.3 55.5 + - - +
790A LYS 3.0 1.3 - - - -
791A SER* 2.7 8.6 + - - -
792A MET* 2.5 61.5 + - + +
813A ARG* 6.1 3.4 - - + -
814A LEU* 4.4 12.3 - - + -
1004A ILE* 3.5 40.6 - - + +
1007A ILE* 4.1 13.2 - - + -
1008A ILE* 4.6 8.7 - - + -
----------------------------------------------------------
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Residues in contact with PHE 789 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
249A VAL* 5.5 1.8 - - + -
250A ALA* 4.8 14.1 - - + -
253A VAL* 3.6 27.8 - - + -
254A LEU* 3.7 35.7 - - + -
269A GLU* 4.1 21.8 - - + -
273A TYR* 3.8 28.3 - + + +
785A ARG 3.1 16.4 + - - +
786A TYR 4.2 0.4 - - - +
788A VAL* 1.3 79.5 - - - +
790A LYS* 1.3 77.0 + - + +
792A MET* 3.6 13.4 - - + +
793A LEU* 2.8 48.0 + - + +
814A LEU* 4.7 6.3 - - + +
----------------------------------------------------------
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Residues in contact with LYS 790 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
270A LEU* 2.8 68.5 + - + +
273A TYR* 4.3 8.5 - - - -
274A ASN* 3.3 2.0 + - - -
786A TYR* 3.0 56.7 + - + +
787A MET* 4.8 0.9 - - - -
788A VAL 3.0 0.8 - - - -
789A PHE* 1.3 91.5 - - + +
791A SER* 1.3 58.8 + - - +
792A MET 3.1 0.4 - - - -
793A LEU* 4.3 3.4 - - - +
794A ARG* 2.5 63.3 + - - +
----------------------------------------------------------
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Residues in contact with SER 791 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
787A MET 3.0 21.4 + - - -
788A VAL* 2.7 8.8 + - - -
790A LYS* 1.3 78.1 - - - +
792A MET* 1.3 59.4 + - - +
794A ARG* 3.1 10.3 - - - +
795A GLN* 3.7 6.8 + - - +
1007A ILE 3.5 9.4 + - - -
1008A ILE* 3.2 18.6 + - - -
1010A LYS* 3.1 52.9 - - - +
----------------------------------------------------------
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Residues in contact with MET 792 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
254A LEU* 4.3 10.1 - - + -
788A VAL* 2.5 42.7 + - + +
789A PHE* 3.6 14.8 - - + +
791A SER* 1.3 76.1 - - - +
793A LEU* 1.3 55.7 + - - +
795A GLN* 2.6 33.5 - - - +
799A TRP* 5.2 10.1 - - + +
800A PHE* 2.9 22.9 - - + -
810A LEU* 4.0 44.6 - - + +
813A ARG* 5.9 2.9 - - + -
814A LEU* 3.7 18.2 - - + -
1007A ILE* 4.5 12.8 - - + -
----------------------------------------------------------
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Residues in contact with LEU 793 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
253A VAL* 4.1 20.4 - - + -
254A LEU* 5.0 3.8 - - + -
257A ILE* 3.6 32.0 - - + +
260A VAL* 4.6 6.5 - - + -
261A ILE* 5.3 3.0 - - + +
266A GLN* 3.2 47.2 + - + +
269A GLU* 4.6 5.2 - - + -
270A LEU* 3.6 27.1 - - + -
789A PHE* 2.8 37.3 + - + +
790A LYS* 4.1 5.2 - - - +
792A MET* 1.3 74.4 - - - +
794A ARG* 1.3 60.1 + - + +
795A GLN* 3.1 10.3 + - - +
796A ASP* 6.1 0.2 - - - -
800A PHE* 4.9 0.4 - - - -
----------------------------------------------------------
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Residues in contact with ARG 794 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
266A GLN* 4.5 10.3 - - + +
270A LEU* 5.5 12.4 - - + +
787A MET* 4.1 7.9 + - - +
790A LYS* 2.5 36.9 + - - +
791A SER* 3.1 24.2 - - - +
792A MET 3.3 0.2 - - - -
793A LEU* 1.3 79.1 - - + +
795A GLN* 1.3 57.1 + - - +
796A ASP* 4.9 2.2 - - - +
1010A LYS* 3.5 28.5 - - + +
1012A PRO* 2.9 24.9 - - + +
1014A ILE* 3.6 12.2 - - - +
1015A ASP* 3.2 28.9 - - + +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il