Contacts of the helix formed by residues 908 - 957 (chain A) in PDB entry 4KSC
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ARG 908 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
476A PHE* 3.3 28.4 - - - -
486A TYR* 2.7 75.3 + - + +
487A GLY* 3.9 2.8 - - - +
539A ARG* 4.7 10.5 - - - +
901A ARG 3.7 17.0 + - - -
902A THR* 3.4 22.4 + - - +
904A VAL* 5.1 0.2 - - - +
905A SER* 2.7 35.5 + - - -
906A LEU* 3.1 2.2 - - - +
907A THR* 1.3 91.2 + - - +
909A GLU* 1.3 57.1 + - - +
910A GLN 3.4 2.0 - - - -
911A LYS* 3.7 12.1 - - + -
912A PHE* 2.8 46.1 + - + +
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Residues in contact with GLU 909 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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149A HIS* 5.7 1.3 + - - -
152A MET* 3.5 48.2 - - + +
155A GLU* 4.6 5.3 - - - +
375A SER* 6.0 2.5 - - - +
460A ARG* 5.2 6.3 - - - +
902A THR* 4.6 2.2 + - - -
903A VAL* 3.2 42.3 + - - +
906A LEU* 3.1 38.4 + - + +
907A THR 3.4 0.4 - - - -
908A ARG* 1.3 79.3 - - - +
910A GLN* 1.3 60.4 + - + +
912A PHE* 4.2 1.0 - - - +
913A GLU* 3.2 26.3 + - - +
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Residues in contact with GLN 910 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
149A HIS* 3.9 25.9 + - - -
460A ARG* 5.2 11.0 - - - +
907A THR 4.8 1.2 + - - +
909A GLU* 1.3 77.8 - - + +
911A LYS* 1.3 53.6 + - - +
912A PHE 3.3 0.7 - - - -
913A GLU* 3.1 12.7 + - - +
914A THR* 2.5 51.7 + - - +
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Residues in contact with LYS 911 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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482A GLU* 5.3 4.0 - - - -
485A ARG* 6.0 4.5 - - - +
486A TYR* 3.5 35.2 - - + -
489A GLU* 4.7 19.0 - - + +
907A THR 3.8 7.9 + - - +
908A ARG* 3.7 20.1 - - + -
910A GLN* 1.3 78.9 - - - +
912A PHE* 1.3 61.7 - - + +
914A THR* 3.2 15.6 - - - +
915A MET* 3.1 37.5 + - - +
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Residues in contact with PHE 912 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
152A MET* 4.6 6.1 - - + -
476A PHE* 3.9 30.5 - + + -
486A TYR* 3.7 27.4 - + - -
892A ILE 6.1 0.4 - - - -
895A GLU* 5.3 8.5 - - - -
896A ALA* 3.5 32.3 - - + -
902A THR* 3.9 27.4 - - - -
908A ARG* 2.8 32.8 + - + +
909A GLU 4.2 3.1 - - - +
911A LYS* 1.3 73.9 - - + +
913A GLU* 1.3 61.9 + - - +
914A THR 3.0 1.5 + - - -
915A MET* 3.3 16.5 + - - +
916A TYR* 3.0 49.7 + + + -
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Residues in contact with GLU 913 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
145A GLN 4.9 1.8 - - - +
148A PHE* 3.0 49.2 - - - +
149A HIS* 3.9 18.3 + - + +
152A MET* 3.1 19.6 - - + +
909A GLU 3.2 16.3 - - - +
910A GLN* 3.1 21.8 + - - +
912A PHE* 1.3 75.3 - - - +
914A THR* 1.3 58.9 + - - +
916A TYR* 3.2 25.9 - - - +
917A ALA* 3.0 26.0 + - - +
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Residues in contact with THR 914 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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910A GLN* 2.5 40.5 + - - +
911A LYS* 3.2 20.2 - - - +
912A PHE 3.0 0.4 - - - -
913A GLU* 1.3 71.6 - - - +
915A MET* 1.3 67.3 + - + +
917A ALA* 3.2 15.6 + - + +
918A GLN* 3.2 19.6 + - + +
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Residues in contact with MET 915 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
478A THR* 6.0 3.4 - - + -
486A TYR* 3.4 25.1 - - - +
892A ILE* 5.1 13.9 - - + -
911A LYS* 3.1 30.2 + - + +
912A PHE* 3.3 17.9 + - - +
914A THR* 1.3 77.4 - - + +
916A TYR* 1.3 57.2 + - + +
918A GLN* 3.3 8.8 + - - +
919A SER* 2.6 42.2 + - - +
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Residues in contact with TYR 916 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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145A GLN* 6.3 0.2 - - - -
148A PHE* 3.7 23.8 - + + -
152A MET* 6.0 0.2 - - - -
889A SER 4.4 4.9 - - - -
892A ILE* 2.3 62.5 + - + -
893A ALA* 3.1 13.7 - - + -
896A ALA* 3.1 21.7 - - + +
912A PHE* 3.0 34.1 + + + +
913A GLU* 3.2 39.3 - - - +
915A MET* 1.3 78.1 - - + +
917A ALA* 1.3 54.6 + - - +
919A SER* 3.8 3.8 - - - -
920A LEU* 2.4 46.0 + - + +
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Residues in contact with ALA 917 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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141A HIS* 5.0 2.6 - - - -
145A GLN* 4.1 25.8 - - - +
913A GLU 3.0 14.7 + - - +
914A THR* 3.2 12.8 + - + +
916A TYR* 1.3 76.5 - - - +
918A GLN* 1.3 57.4 + - - +
920A LEU* 3.5 4.9 - - - +
921A GLN* 2.8 35.0 + - - +
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Residues in contact with GLN 918 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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914A THR* 3.2 17.5 + - + +
915A MET* 3.7 9.2 - - - +
917A ALA* 1.3 79.5 - - + +
919A SER* 1.3 62.1 + - - +
921A GLN* 2.9 37.6 + - - +
922A ILE* 4.0 12.6 - - - +
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Residues in contact with SER 919 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
885A GLU 5.2 0.2 - - - +
889A SER* 3.2 33.7 + - - -
892A ILE* 3.3 21.9 - - - +
915A MET* 2.6 28.7 + - - +
916A TYR* 3.4 7.9 - - - -
918A GLN* 1.3 75.5 - - - +
920A LEU* 1.3 60.0 + - - +
921A GLN 3.1 1.9 + - - -
922A ILE* 3.7 8.6 + - - +
923A PRO* 3.3 13.9 - - - +
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Residues in contact with LEU 920 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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141A HIS* 4.0 24.3 + - + +
144A ARG* 3.2 50.0 - - + +
145A GLN* 5.3 4.5 - - + -
148A PHE* 4.1 25.1 - - + -
886A LEU* 6.3 2.0 - - + -
889A SER* 4.1 19.5 - - - -
916A TYR* 2.4 42.1 + - + +
917A ALA* 3.5 4.9 - - - +
919A SER* 1.3 66.4 - - - +
921A GLN* 1.3 64.3 + - - +
922A ILE 3.3 0.4 - - - -
923A PRO* 3.3 18.2 - - + +
924A TYR* 3.5 13.0 + - - +
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Residues in contact with GLN 921 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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141A HIS* 5.0 4.0 - - - -
917A ALA 2.8 14.3 + - - +
918A GLN* 2.9 40.3 + - - +
919A SER 3.1 0.8 - - - -
920A LEU* 1.3 78.6 - - - +
922A ILE* 1.3 67.6 + - + +
924A TYR* 3.3 24.3 - - + +
925A ARG* 3.4 28.7 + - + +
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Residues in contact with ILE 922 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
885A GLU* 4.4 21.8 - - + +
918A GLN 4.0 15.3 - - - +
919A SER* 4.1 5.4 - - - +
921A GLN* 1.3 79.2 - - + +
923A PRO* 1.4 72.5 - - + +
924A TYR 3.3 0.3 + - - -
925A ARG* 3.4 32.8 + - - +
926A ASN* 3.0 19.1 + - + +
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Residues in contact with PRO 923 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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144A ARG* 5.0 11.7 - - - +
882A ASP* 4.3 11.7 - - - +
885A GLU* 3.6 33.0 - - + +
886A LEU* 4.6 13.5 - - + +
889A SER* 5.2 0.9 - - - +
919A SER 3.3 14.4 - - - +
920A LEU* 3.3 21.1 - - + +
922A ILE* 1.4 91.9 - - + +
924A TYR* 1.3 49.7 + - - +
926A ASN* 3.1 3.7 + - + +
927A ALA* 2.4 38.0 + - - +
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Residues in contact with TYR 924 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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137A GLY* 4.8 6.5 - - - -
138A ARG* 2.9 59.9 + - + +
141A HIS* 3.6 37.9 - + + +
920A LEU 3.5 12.0 + - - +
921A GLN* 3.3 17.2 + - + +
922A ILE 3.1 0.2 - - - -
923A PRO* 1.3 77.6 - - - +
925A ARG* 1.3 61.1 + - + +
927A ALA* 3.0 10.6 + - + +
928A MET* 2.8 40.5 + - + +
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Residues in contact with ARG 925 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
921A GLN* 3.4 29.3 + - + +
922A ILE* 3.7 32.0 - - - +
924A TYR* 1.3 78.6 - - + +
926A ASN* 1.3 57.7 + - - +
928A MET* 3.3 20.8 + - - +
929A LYS* 2.8 27.1 + - - +
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Residues in contact with ASN 926 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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878A GLN* 4.2 17.8 + - - +
881A LYS* 4.7 13.7 - - - +
882A ASP* 4.2 18.9 - - - +
885A GLU* 3.6 32.6 + - - +
922A ILE* 3.0 15.0 + - + +
923A PRO 3.2 10.5 - - - +
925A ARG* 1.3 75.6 - - - +
927A ALA* 1.3 58.8 + - - +
929A LYS* 3.4 19.1 - - - +
930A LYS* 3.0 33.3 + - - +
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Residues in contact with ALA 927 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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133A CYS* 4.2 5.6 - - + +
137A GLY* 4.5 21.5 - - - -
923A PRO 2.4 25.0 + - - +
924A TYR* 3.0 15.5 + - + +
926A ASN* 1.3 72.0 + - - +
928A MET* 1.3 60.9 + - - +
930A LYS* 3.3 30.9 + - - +
931A ALA* 3.2 19.8 + - - +
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Residues in contact with MET 928 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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134A LEU* 6.5 0.2 - - - +
138A ARG* 3.9 23.3 - - - +
924A TYR* 2.8 43.4 + - + +
925A ARG* 3.4 22.9 - - - +
927A ALA* 1.3 75.5 - - + +
929A LYS* 1.3 62.0 + - - +
931A ALA* 3.4 20.0 + - - +
932A HIS* 3.9 5.4 + - - +
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Residues in contact with LYS 929 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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878A GLN* 5.5 9.2 - - - +
881A LYS* 6.3 3.6 - - - +
925A ARG 2.8 16.9 + - - +
926A ASN* 3.4 21.1 - - - +
927A ALA 3.2 0.4 - - - -
928A MET* 1.3 78.2 - - - +
930A LYS* 1.3 59.8 + - - +
931A ALA 3.4 0.2 + - - -
932A HIS* 3.4 9.2 + - - +
933A VAL* 3.2 32.0 + - + +
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Residues in contact with LYS 930 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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132A TRP* 4.5 11.7 - - - +
133A CYS* 3.9 19.5 - - - +
137A GLY* 5.8 1.4 - - - -
179A ASN* 5.7 5.3 - - - +
878A GLN* 4.4 15.9 + - + +
882A ASP* 5.7 5.8 + - - -
926A ASN* 3.0 18.8 + - - +
927A ALA* 3.3 36.3 + - - +
929A LYS* 1.3 73.0 - - - +
931A ALA* 1.3 58.7 + - - +
932A HIS 3.2 0.7 - - - -
933A VAL* 3.5 11.4 - - + -
934A PHE* 2.6 64.3 + - + +
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Residues in contact with ALA 931 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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126A TYR* 4.2 5.6 - - - -
129A VAL* 5.1 1.0 - - - +
130A SER* 4.8 10.9 + - - +
133A CYS* 3.6 28.3 - - + -
134A LEU* 4.5 15.5 - - + +
927A ALA 3.2 8.8 + - - +
928A MET* 3.4 16.6 - - - +
929A LYS 3.2 0.4 - - - -
930A LYS* 1.3 78.3 - - - +
932A HIS* 1.3 57.1 + - - +
934A PHE* 4.6 0.3 - - - +
935A GLY* 3.0 24.9 + - - -
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Residues in contact with HIS 932 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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126A TYR* 3.9 27.7 + + - -
928A MET 3.9 4.8 + - - +
929A LYS* 3.4 9.9 + - - +
930A LYS 3.2 0.2 - - - -
931A ALA* 1.3 78.1 - - - +
933A VAL* 1.3 60.9 + - + +
936A ILE* 2.9 45.2 + - + +
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Residues in contact with VAL 933 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
874A MET* 4.1 26.5 - - + -
878A GLN* 4.2 24.5 - - + +
929A LYS* 3.2 25.8 - - + +
930A LYS* 3.3 12.5 + - - -
932A HIS* 1.3 77.1 - - + +
934A PHE* 1.3 69.0 + - + +
936A ILE* 3.3 8.4 - - + +
937A THR* 3.1 33.2 + - + +
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Residues in contact with PHE 934 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
129A VAL* 3.3 25.1 - - + +
132A TRP* 4.4 21.8 - + - -
133A CYS* 4.1 9.6 - - - -
184A ASP* 5.9 0.9 - - - -
875A LEU* 4.5 33.4 - - + -
878A GLN* 4.4 21.8 - - + -
930A LYS* 2.6 63.5 + - + +
933A VAL* 1.3 77.6 - - + +
935A GLY* 1.3 59.6 + - - +
937A THR* 2.8 21.9 + - - -
938A PHE* 3.4 10.2 + - - +
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Residues in contact with GLY 935 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
126A TYR* 3.4 27.6 - - - -
129A VAL* 3.7 14.9 - - - +
931A ALA 3.0 21.6 + - - -
932A HIS 3.8 0.2 - - - -
933A VAL 3.2 0.4 - - - -
934A PHE* 1.3 78.7 - - - +
936A ILE* 1.3 59.6 + - - +
938A PHE* 4.7 0.7 - - - +
939A SER* 3.2 23.2 + - - -
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Residues in contact with ILE 936 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
126A TYR* 3.9 5.5 - - + -
932A HIS* 2.9 32.4 + - + +
933A VAL* 3.3 16.4 - - + +
935A GLY* 1.3 71.5 - - - +
937A THR* 1.3 68.2 + - + +
939A SER* 2.4 26.3 + - - +
940A PHE* 2.9 22.0 + - + +
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Residues in contact with THR 937 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
871A GLU* 4.2 31.3 + - + +
874A MET* 5.1 9.4 - - + -
933A VAL* 3.1 23.8 + - + +
934A PHE* 2.8 30.0 + - - -
936A ILE* 1.3 79.0 - - + +
938A PHE* 1.3 60.4 + - - +
940A PHE* 3.2 6.7 + - - +
941A THR* 2.8 34.0 + - - -
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Residues in contact with PHE 938 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
60A HIS* 4.0 17.3 - + - -
125A ALA* 3.7 14.6 - - + -
128A GLN* 3.4 28.0 - - - -
129A VAL* 3.5 32.8 - - + -
188A MET* 4.2 25.8 - - + -
191A GLN* 5.2 0.4 - - - -
871A GLU* 5.0 8.9 + - - +
934A PHE 3.4 4.8 + - - +
937A THR* 1.3 77.7 + - - +
939A SER* 1.3 64.3 + - - +
941A THR* 3.3 9.9 + - + -
942A GLN* 3.1 46.0 + - + +
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Residues in contact with SER 939 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
122A LEU* 3.5 34.4 - - - +
125A ALA* 3.7 13.0 - - - -
126A TYR* 4.0 11.2 - - - +
935A GLY 3.2 14.0 + - - -
936A ILE* 2.4 34.1 + - - +
938A PHE* 1.3 79.5 - - - +
940A PHE* 1.3 52.5 + - - +
942A GLN* 3.3 4.5 + - - +
943A ALA* 2.8 33.1 + - - +
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Residues in contact with PHE 940 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
122A LEU* 4.8 1.1 - - - -
863A ILE* 6.0 2.0 - - + -
867A ALA* 3.9 29.2 - - + -
936A ILE* 2.9 20.7 + - + +
937A THR* 3.5 6.1 - - - +
939A SER* 1.3 79.4 + - - +
941A THR* 1.3 67.3 + - - +
943A ALA* 3.1 18.9 + - + +
944A MET* 3.1 37.4 + - + +
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Residues in contact with THR 941 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
864A ILE 6.1 0.9 - - - +
867A ALA* 4.9 8.1 + - - +
868A GLY* 5.7 7.0 - - - +
871A GLU* 2.6 28.8 + - - +
937A THR 2.8 21.5 + - - -
938A PHE* 3.5 13.6 - - + -
939A SER 3.3 0.2 - - - -
940A PHE* 1.3 76.3 - - - +
942A GLN* 1.3 75.7 + - - +
944A MET* 3.5 13.1 + - - +
945A MET* 3.6 7.4 + - - +
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Residues in contact with GLN 942 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
60A HIS* 4.4 16.7 + - - +
121A VAL* 4.0 28.2 - - + +
125A ALA* 4.7 2.2 - - + -
191A GLN* 6.0 0.2 - - - +
938A PHE* 3.1 43.4 + - + +
939A SER 3.8 3.6 - - - +
941A THR* 1.3 92.4 - - - +
943A ALA* 1.3 60.9 + - - +
944A MET 3.1 1.6 - - - -
945A MET* 3.1 39.3 + - + +
946A TYR* 3.5 8.3 + - - -
----------------------------------------------------------
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Residues in contact with ALA 943 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
122A LEU* 3.7 21.3 - - + -
939A SER 2.8 17.3 + - - +
940A PHE* 3.1 20.6 + - + +
942A GLN* 1.3 77.7 - - - +
944A MET* 1.3 63.9 + - + +
946A TYR* 3.0 36.1 - - + -
947A PHE* 3.4 9.0 - - - +
----------------------------------------------------------
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Residues in contact with MET 944 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
860A ILE* 5.3 3.1 - - + -
863A ILE* 3.8 26.0 - - + -
864A ILE* 3.6 27.8 - - + +
867A ALA* 4.8 6.7 - - + -
940A PHE* 3.1 43.6 + - + +
941A THR* 3.5 8.9 + - - +
942A GLN 3.1 0.4 - - - -
943A ALA* 1.3 80.6 - - - +
945A MET* 1.3 54.5 + - - +
947A PHE* 3.8 31.5 - - + +
948A SER* 2.3 40.7 + - - -
----------------------------------------------------------
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Residues in contact with MET 945 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
64A LEU* 5.0 18.2 - - + -
67A MET* 5.4 7.4 - - + -
117A ILE* 5.3 5.8 - - + -
121A VAL* 4.3 23.8 - - + -
941A THR 3.6 4.2 + - - +
942A GLN* 3.1 40.7 + - + +
944A MET* 1.3 76.0 - - - +
946A TYR* 1.3 78.3 + - + +
948A SER* 3.2 8.8 + - - -
949A TYR* 3.2 44.8 + - + -
----------------------------------------------------------
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Residues in contact with TYR 946 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
67A MET* 5.2 4.9 - - + -
114A TYR* 3.5 45.9 - + + +
115A THR* 5.0 3.4 - - + -
117A ILE* 5.7 0.9 - - + -
118A GLY* 3.3 39.0 - - - +
119A ALA* 5.1 0.9 - - - -
122A LEU* 5.2 6.6 - - + +
942A GLN 3.5 4.0 + - - -
943A ALA* 3.0 45.0 - - + +
945A MET* 1.3 88.7 - - + +
947A PHE* 1.3 69.4 + + + +
949A TYR* 3.2 6.3 + - - +
950A ALA* 2.7 36.6 + - - +
----------------------------------------------------------
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Residues in contact with PHE 947 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
114A TYR* 6.4 0.9 - + - -
856A LEU* 6.1 2.7 - - + -
859A ALA 5.4 1.8 - - - -
860A ILE* 3.5 28.2 - - + +
943A ALA 3.4 16.9 + - - +
944A MET* 3.8 27.4 - - + +
945A MET 3.3 0.6 - - - -
946A TYR* 1.3 97.8 - + + +
948A SER* 1.3 60.7 + - - +
950A ALA* 3.6 6.8 - - + +
951A ALA* 3.2 28.4 + - + +
----------------------------------------------------------
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Residues in contact with SER 948 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
860A ILE* 3.3 33.6 - - - +
864A ILE* 4.2 8.8 - - - +
944A MET 2.3 27.5 + - - -
945A MET* 3.3 8.4 - - - -
947A PHE* 1.3 76.6 - - - +
949A TYR* 1.3 62.8 + - - +
951A ALA* 4.2 1.0 - - - +
952A CYS* 3.0 30.6 + - - +
977A ILE* 6.5 0.7 - - - -
----------------------------------------------------------
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Residues in contact with TYR 949 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
64A LEU* 5.8 4.3 - - + +
67A MET* 3.7 30.1 - - + -
68A MET* 3.6 32.9 - - + +
71A PHE* 5.2 2.7 - + - -
114A TYR* 5.1 0.9 - - - -
945A MET* 3.2 43.8 + - + +
946A TYR 3.2 4.6 + - - +
948A SER* 1.3 78.1 - - - +
950A ALA* 1.3 68.8 + - - +
952A CYS* 4.1 5.8 - - - -
953A PHE* 3.0 57.1 + + + +
974A PHE* 5.4 10.2 - + - -
----------------------------------------------------------
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Residues in contact with ALA 950 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
114A TYR* 3.4 45.4 - - + +
946A TYR 2.7 22.3 + - - +
947A PHE* 3.6 13.5 - - + +
949A TYR* 1.3 73.9 - - - +
951A ALA* 1.3 54.6 + - - +
953A PHE* 4.1 0.6 - - - +
954A ARG* 2.5 41.2 + - + +
----------------------------------------------------------
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Residues in contact with ALA 951 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
853A LEU* 5.5 0.9 - - - +
856A LEU* 3.3 33.1 - - + +
860A ILE* 4.6 11.9 - - + -
947A PHE* 3.2 21.7 + - + +
948A SER 4.3 1.3 - - - +
950A ALA* 1.3 79.1 - - - +
952A CYS* 1.3 62.3 + - - +
954A ARG* 4.0 10.8 - - - +
955A PHE* 3.1 25.9 + - - +
----------------------------------------------------------
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Residues in contact with CYS 952 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
853A LEU* 4.9 9.7 - - - +
948A SER 3.0 20.4 + - - +
949A TYR* 3.6 9.6 - - + +
951A ALA* 1.3 77.1 - - - +
953A PHE* 1.3 83.5 + - - +
956A GLY* 3.0 23.4 + - - -
970A VAL* 5.1 11.5 - - - +
973A VAL* 4.3 29.2 - - + -
----------------------------------------------------------
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Residues in contact with PHE 953 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
67A MET* 5.6 3.1 - - + -
71A PHE* 3.4 36.3 - + - -
74A MET* 3.4 36.6 - - + -
110A TYR* 4.1 24.4 - + + -
949A TYR* 3.0 57.8 + + + +
950A ALA* 4.1 0.9 - - - +
952A CYS* 1.3 89.1 - - - +
954A ARG* 1.3 59.1 + - - +
956A GLY* 4.2 2.2 - - - +
957A ALA* 2.6 36.7 + - - +
970A VAL* 6.3 2.9 - - + -
----------------------------------------------------------
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Residues in contact with ARG 954 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
107A MET* 3.9 28.7 - - + +
110A TYR* 5.4 3.2 - - + +
114A TYR* 5.2 15.0 - - + +
856A LEU* 5.4 5.7 - - - +
950A ALA* 2.5 35.2 + - + +
951A ALA* 4.0 5.8 - - - +
953A PHE* 1.3 70.8 - - - +
955A PHE* 1.3 74.5 + - - +
957A ALA* 2.7 27.7 - - - +
958A TYR* 3.3 34.0 - - - +
----------------------------------------------------------
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Residues in contact with PHE 955 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
850A GLY* 6.5 0.4 - - - -
852A GLN* 3.5 31.0 - - + -
853A LEU* 3.7 45.1 - - + -
856A LEU* 3.4 18.2 - - + -
951A ALA 3.1 16.4 + - - +
954A ARG* 1.3 91.5 - - - +
956A GLY* 1.3 60.5 + - - +
957A ALA 2.8 12.6 - - - +
958A TYR* 4.9 3.1 - + - -
959A LEU* 4.2 34.3 - - + -
960A VAL* 3.1 32.1 + - + +
----------------------------------------------------------
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Residues in contact with GLY 956 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
853A LEU* 5.1 3.8 - - - +
952A CYS 3.0 22.4 + - - -
953A PHE* 3.6 2.5 - - - -
954A ARG 3.2 0.2 - - - -
955A PHE* 1.3 77.0 - - - +
957A ALA* 1.3 57.6 + - - +
960A VAL* 3.2 13.8 - - - +
965A MET* 3.1 30.0 - - - +
970A VAL* 4.2 20.1 - - - +
----------------------------------------------------------
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Residues in contact with ALA 957 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
103A LEU* 5.1 1.6 - - + -
107A MET* 3.8 8.3 - - + -
110A TYR* 3.5 32.3 - - + -
953A PHE 2.6 19.9 + - - +
954A ARG 2.7 13.7 - - - +
955A PHE 2.8 14.9 - - - +
956A GLY* 1.3 72.3 - - - +
958A TYR* 1.3 69.4 + - - +
959A LEU 3.2 0.9 + - - -
960A VAL 3.4 1.6 + - - -
961A THR* 3.3 17.7 - - - +
965A MET* 4.2 2.7 - - + +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il