Contacts of the helix formed by residues 1674 - 1698 (chain B) in PDB entry 4LX0
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ASP1674 (chain B).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1554B CYS* 3.9 14.2 - - - +
1555B ARG* 4.7 1.6 + - - -
1558B HIS* 2.8 32.7 + - - -
1672B GLY 3.5 2.2 + - - +
1673B LEU* 1.3 77.6 - - - +
1675B PRO* 1.3 69.1 - - - +
1677B ILE* 2.9 33.9 + - + +
1678B ILE* 3.2 9.9 + - - +
1823B PRO* 3.9 13.2 - - + +
1825B ASN* 2.7 29.3 + - - +
130C HIS* 3.5 12.8 - - - +
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Residues in contact with PRO1675 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1673B LEU 3.3 3.8 - - - +
1674B ASP* 1.3 83.6 - - - +
1676B GLU* 1.3 77.7 + - - +
1678B ILE* 3.3 13.3 + - + +
1679B LEU* 3.0 32.6 + - + +
127C ASP 5.9 3.1 - - - +
130C HIS* 3.4 38.8 - - + +
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Residues in contact with GLU1676 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1675B PRO* 1.3 89.9 - - - +
1677B ILE* 1.3 60.9 + - - +
1679B LEU* 3.5 14.8 + - + +
1680B GLN* 2.8 36.7 + - - +
1821B LEU 4.9 1.1 - - - +
1823B PRO* 3.4 32.9 - - + +
1825B ASN* 3.1 31.3 + - - +
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Residues in contact with ILE1677 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1550B LEU* 4.1 5.2 - - + -
1554B CYS* 3.8 16.6 - - - -
1602B TYR* 4.1 26.9 - - + -
1673B LEU* 3.7 30.5 - - + -
1674B ASP* 2.9 30.2 + - + +
1676B GLU* 1.3 75.2 - - - +
1678B ILE* 1.3 66.0 + - - +
1680B GLN* 3.0 12.2 + - - +
1681B VAL* 2.9 23.6 + - + +
1820B VAL* 5.2 1.1 - - + -
1822B PHE* 3.5 35.7 - - + -
1823B PRO* 4.3 7.4 - - + -
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Residues in contact with ILE1678 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1665B HIS* 3.8 24.9 - - + +
1668B MET* 3.8 45.5 - - + -
1669B CYS* 4.2 16.4 - - - +
1673B LEU* 3.8 23.6 - - + +
1674B ASP 3.2 8.3 + - - +
1675B PRO* 3.5 14.4 - - + +
1677B ILE* 1.3 78.4 - - - +
1679B LEU* 1.3 60.8 + - - +
1681B VAL* 3.1 17.2 + - - +
1682B PHE* 3.2 17.3 + - + -
1728B LEU* 4.0 13.2 - - + -
129C ARG* 5.6 1.6 - - - +
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Residues in contact with LEU1679 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1675B PRO* 3.0 23.9 + - + +
1676B GLU* 3.7 16.6 - - + +
1677B ILE 3.2 0.2 - - - -
1678B ILE* 1.3 75.4 - - - +
1680B GLN* 1.3 58.9 + - + +
1682B PHE* 3.3 2.0 + - - -
1683B LYS* 3.0 24.1 + - - +
1727B ASN 4.3 6.1 - - - +
1728B LEU* 3.9 29.8 - - + -
1730B GLN* 4.7 9.4 - - + +
1731B SER* 3.2 44.7 - - - +
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Residues in contact with GLN1680 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1602B TYR* 3.6 15.3 + - + +
1676B GLU* 2.8 30.1 + - - +
1677B ILE* 3.0 12.5 + - - +
1679B LEU* 1.3 78.9 - - + +
1681B VAL* 1.3 64.5 + - - +
1683B LYS* 3.7 13.4 - - + +
1684B GLN* 3.0 23.9 + - - +
1731B SER 5.4 0.9 - - - +
1818B PHE* 5.8 0.3 - - - -
1819B PRO 4.1 3.1 - - - +
1820B VAL* 3.4 14.8 - - + +
1821B LEU* 2.9 49.5 + - - +
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Residues in contact with VAL1681 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1543B PHE* 5.4 6.5 - - + -
1602B TYR* 4.0 21.5 - - + -
1605B LEU* 4.1 15.3 - - + -
1606B ILE* 4.2 13.0 - - + -
1609B ALA* 5.5 1.3 - - + -
1664B PHE* 6.1 0.4 - - + -
1668B MET* 3.9 35.2 - - + -
1677B ILE* 2.9 22.2 + - + +
1678B ILE 3.1 8.0 + - - +
1680B GLN* 1.3 75.6 - - - +
1682B PHE* 1.3 61.1 + - + +
1684B GLN* 3.1 5.7 + - - +
1685B LEU* 3.0 43.4 + - + +
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Residues in contact with PHE1682 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1661B MET* 3.6 38.1 - - + -
1664B PHE* 4.3 3.6 - - + -
1665B HIS* 3.8 26.0 - + + -
1668B MET* 3.4 29.2 - - + -
1678B ILE* 3.2 24.3 + - + +
1679B LEU* 4.1 3.8 - - - +
1680B GLN 3.2 0.2 - - - -
1681B VAL* 1.3 75.8 - - + +
1683B LYS* 1.3 64.8 + - - +
1684B GLN 3.1 0.9 - - - -
1685B LEU* 4.2 18.8 - - + +
1686B PHE* 2.9 31.3 + + + +
1722B TRP* 3.5 24.5 - + - -
1723B LEU* 4.7 10.8 - - + -
1728B LEU* 3.8 20.4 - - + -
1731B SER* 5.1 2.9 - - - +
1733B ALA* 4.2 3.1 - - - -
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Residues in contact with LYS1683 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1679B LEU 3.0 12.2 + - - +
1680B GLN* 3.7 13.9 - - + +
1682B PHE* 1.3 76.4 - - - +
1684B GLN* 1.3 61.2 + - - +
1686B PHE* 3.6 0.9 + - - +
1687B TYR* 3.0 21.7 + - - +
1731B SER 3.5 27.8 - - - +
1732B GLY* 4.2 7.9 - - - -
1733B ALA* 3.9 13.6 - - - +
1736B THR* 3.7 20.2 - - + +
1818B PHE* 3.9 45.1 - - + +
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Residues in contact with GLN1684 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1602B TYR* 4.3 5.0 + - - +
1606B ILE* 3.8 32.5 - - + -
1610B GLU* 3.7 11.8 + - - +
1680B GLN 3.0 15.4 + - - +
1681B VAL 3.3 9.0 - - - +
1682B PHE 3.1 0.2 - - - -
1683B LYS* 1.3 78.5 - - - +
1685B LEU* 1.3 62.1 + - + +
1687B TYR* 3.4 15.0 - - - +
1688B MET* 3.2 18.0 + - - +
1816B HIS 2.7 26.7 + - - -
1817B MET* 3.4 13.8 - - - +
1818B PHE* 2.9 42.7 + - + +
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Residues in contact with LEU1685 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1606B ILE* 4.8 7.0 - - + +
1609B ALA* 3.8 32.1 - - + -
1610B GLU* 3.8 25.1 - - + +
1613B LEU* 4.1 24.1 - - + +
1661B MET* 4.7 4.0 - - - -
1664B PHE* 4.3 9.4 - - + -
1681B VAL* 3.0 35.8 + - + +
1682B PHE* 3.1 23.5 + - + +
1684B GLN* 1.3 74.4 - - - +
1686B PHE* 1.3 71.3 + - + +
1688B MET* 3.0 16.0 + - - +
1689B ILE* 3.1 18.5 + - - +
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Residues in contact with PHE1686 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1661B MET* 3.7 30.7 - - + -
1682B PHE* 2.9 23.5 + + + +
1683B LYS 3.9 0.4 - - - +
1685B LEU* 1.3 73.5 - - + +
1687B TYR* 1.3 66.3 + - - +
1689B ILE* 3.2 12.5 + - + +
1690B ASN* 3.0 22.7 + - - +
1719B LEU* 3.8 33.9 - - + -
1720B GLU* 5.2 0.4 - - - -
1722B TRP* 3.9 15.0 - + - -
1723B LEU* 3.6 36.3 - - + -
1733B ALA* 3.7 34.3 - - + +
1734B VAL* 5.2 0.4 - - - -
1736B THR* 3.5 3.4 + - - +
1737B MET* 3.6 23.1 - - + +
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Residues in contact with TYR1687 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1683B LYS 3.0 9.1 + - - +
1684B GLN* 3.4 24.0 - - - +
1686B PHE* 1.3 76.0 - - - +
1688B MET* 1.3 68.1 + - - +
1690B ASN* 3.3 18.5 + - - +
1691B ALA* 3.0 25.8 + - + +
1736B THR* 3.3 18.5 + - - -
1812B LEU* 4.4 7.6 - - + +
1813B ASP* 2.6 37.4 + - - +
1814B ALA* 4.0 11.7 - - - -
1816B HIS* 3.6 26.3 - + + +
1818B PHE* 3.5 35.2 - + + -
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Residues in contact with MET1688 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1610B GLU* 3.5 57.2 - - - +
1613B LEU* 4.6 7.4 - - - -
1614B GLN* 4.4 11.0 - - - +
1617B ILE* 4.0 17.5 - - + -
1684B GLN 3.2 9.1 + - - +
1685B LEU* 3.0 14.4 + - - +
1687B TYR* 1.3 86.8 - - - +
1689B ILE* 1.3 57.1 + - - +
1691B ALA* 3.2 1.7 + - - +
1692B VAL* 2.8 41.7 + - + +
1814B ALA 4.3 11.2 - - - +
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Residues in contact with ILE1689 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1613B LEU* 4.9 7.4 - - + -
1617B ILE* 4.0 25.4 - - + -
1621B MET* 4.1 29.2 - - + -
1657B ILE* 4.4 22.2 - - + -
1661B MET* 4.7 8.7 - - - -
1685B LEU 3.1 14.8 + - - +
1686B PHE* 3.2 22.9 + - + +
1688B MET* 1.3 71.7 - - - +
1690B ASN* 1.3 65.5 + - - +
1693B THR* 2.7 38.9 + - - +
1719B LEU* 4.3 19.3 - - + -
1737B MET* 4.7 5.8 - - - -
1740B LEU* 5.1 0.2 - - + -
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Residues in contact with ASN1690 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1686B PHE 3.0 11.7 + - - +
1687B TYR* 3.3 16.4 + - - +
1689B ILE* 1.3 77.4 - - - +
1691B ALA* 1.3 58.4 + - - +
1693B THR* 4.0 0.5 - - - -
1694B LEU* 2.9 33.0 + - - +
1736B THR 3.1 26.9 + - - +
1737B MET* 3.4 11.1 - - - -
1739B PRO* 3.5 10.1 - - - +
1740B LEU* 3.1 41.2 + - - +
1812B LEU* 3.4 25.3 - - - +
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Residues in contact with ALA1691 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1687B TYR* 3.0 25.7 + - + +
1688B MET 4.0 1.1 - - - +
1690B ASN* 1.3 78.3 - - - +
1692B VAL* 1.3 61.0 + - - +
1695B ASN* 2.8 37.1 + - - -
1812B LEU* 3.8 26.7 - - + -
1814B ALA* 3.8 27.4 - - + -
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Residues in contact with VAL1692 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1614B GLN* 3.7 34.3 - - - +
1617B ILE* 3.9 30.5 - - + -
1618B VAL* 4.1 14.4 - - + -
1688B MET* 2.8 29.1 + - + +
1691B ALA* 1.3 75.7 - - - +
1693B THR* 1.3 65.1 + - - +
1695B ASN* 3.5 4.6 + - - +
1696B ASN* 3.2 20.4 + - - +
1814B ALA* 4.0 16.6 - - + -
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Residues in contact with THR1693 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1617B ILE* 3.2 18.7 - - - +
1618B VAL* 5.2 2.7 - - - +
1621B MET* 3.7 21.1 - - + +
1622B LEU* 3.8 29.7 - - + +
1689B ILE* 2.7 23.9 + - - +
1692B VAL* 1.3 75.1 - - - +
1694B LEU* 1.3 67.6 + - - +
1696B ASN* 3.1 13.0 + - - +
1697B LEU* 3.1 11.8 + - - +
1712B LEU* 3.9 7.9 - - + -
1740B LEU* 3.7 24.6 - - + +
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Residues in contact with LEU1694 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1690B ASN 2.9 20.5 + - - +
1691B ALA* 4.1 2.9 - - - +
1693B THR* 1.3 76.8 - - - +
1695B ASN* 1.3 64.1 + - - +
1697B LEU* 3.2 12.3 + - + +
1698B LEU* 3.0 43.1 + - + +
1739B PRO* 3.8 29.4 - - + +
1740B LEU* 3.7 11.8 - - + +
1743B ALA* 3.8 29.6 - - + -
1767B LEU* 4.1 11.7 - - + -
1771B GLN* 4.7 5.8 - - - +
1775B ILE* 4.5 4.3 - - + -
1812B LEU* 3.8 20.2 - - + -
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Residues in contact with ASN1695 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1691B ALA 2.8 31.9 + - - +
1692B VAL* 3.9 5.1 - - - +
1693B THR 3.2 0.2 - - - -
1694B LEU* 1.3 74.9 - - - +
1696B ASN* 1.3 62.5 + - - +
1698B LEU* 3.5 11.5 + - - +
1699B LEU* 3.6 19.3 + - - +
1811B LEU* 3.5 27.0 - - + +
1812B LEU* 2.8 52.5 + - - +
1814B ALA* 4.6 8.3 - - - +
----------------------------------------------------------
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Residues in contact with ASN1696 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1618B VAL* 3.4 28.8 - - + +
1622B LEU* 3.5 8.7 - - + +
1692B VAL 3.2 14.8 + - - +
1693B THR 3.1 4.3 + - - +
1695B ASN* 1.3 76.6 - - - +
1697B LEU* 1.3 65.5 + - - +
1699B LEU* 3.0 20.0 + - - +
1700B ARG* 2.7 57.0 + - - +
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Residues in contact with LEU1697 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1622B LEU* 4.2 11.8 - - + +
1693B THR 3.1 10.3 + - - +
1694B LEU* 3.5 11.2 - - + +
1696B ASN* 1.3 79.6 + - - +
1698B LEU* 1.3 58.5 + - - +
1699B LEU 3.1 4.2 + - - -
1700B ARG 3.3 9.2 + - - +
1703B VAL* 4.1 17.0 - - + -
1704B CYS* 3.5 20.3 - - - -
1708B THR* 5.4 0.7 - - + -
1712B LEU* 3.8 28.9 - - + -
1740B LEU* 4.5 7.9 - - + -
1743B ALA* 4.4 12.6 - - + -
1747B LEU* 4.4 13.9 - - + -
1775B ILE* 3.7 33.4 - - + -
1778B LEU* 3.3 9.0 - - - +
----------------------------------------------------------
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Residues in contact with LEU1698 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1694B LEU* 3.0 38.1 + - + +
1695B ASN* 3.8 11.9 - - - +
1696B ASN 3.2 0.8 - - - -
1697B LEU* 1.3 73.0 - - - +
1699B LEU* 1.3 61.0 + - - +
1771B GLN* 3.8 28.9 - - + +
1774B LYS* 3.3 42.6 + - + +
1775B ILE* 3.8 28.3 - - + -
1778B LEU* 3.4 7.5 - - - +
1810B LEU* 3.8 27.2 - - + +
1811B LEU* 4.1 15.7 - - + -
1812B LEU 5.3 0.2 - - - +
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il