Contacts of the helix formed by residues 63 - 92 (chain A) in PDB entry 4MBS


Residue contacts within the protein are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332). A short description of the analytical approach is given at the end of the page.
For CSU analysis of other PDB entry

Note:
Non-standard 3 letter residue codes indicate a heterogroup. To identify and analyse, use LPC software

Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB   - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC   - hydrophobic-hydrophilic contact (destabilizing contact)
+/-  - indicates presence/absence of a specific contacts
*    - indicates residues forming contacts  by their side chain
       (including CA atoms)
Residues in contact with SER 63 (chain A).
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     61A  LEU      3.4     0.4    -      -       -      -
     62A  LYS*     1.3    84.5    -      -       -      +
     64A  MET*     1.4    64.8    +      -       -      +
     65A  THR*     3.1    22.6    +      -       -      -
     66A  ASP*     3.3    31.1    +      -       -      +
     67A  ILE*     3.3    16.5    +      -       -      +
    140A  ARG*     3.6     8.7    +      -       -      -
    142A  VAL*     3.9     7.0    -      -       -      +
----------------------------------------------------------
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Residues in contact with MET 64 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     63A  SER*     1.4    69.0    +      -       -      +
     65A  THR*     1.3    64.2    +      -       -      +
     67A  ILE*     3.0    22.5    +      -       -      +
     68A  TYR*     3.2    48.4    +      -       +      +
    125A  ASP*     3.4    35.0    -      -       +      +
    128A  LEU*     4.7     8.7    -      -       +      -
    139A  ALA      5.3     0.2    -      -       -      +
    140A  ARG*     3.9    33.7    +      -       +      +
    141A  THR      3.8    30.0    -      -       -      +
    142A  VAL*     4.3     4.2    -      -       -      +
    144A  PHE*     4.0    21.1    -      -       +      -
    145A  GLY*     4.3     3.4    -      -       -      -
----------------------------------------------------------
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Residues in contact with THR 65 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     63A  SER*     3.3     6.9    +      -       -      -
     64A  MET*     1.3    77.0    -      -       -      +
     66A  ASP*     1.4    58.5    +      -       -      +
     68A  TYR*     3.3     2.4    +      -       -      -
     69A  LEU*     2.9    46.1    +      -       +      +
    122A  LEU*     3.7    22.1    -      -       +      +
    125A  ASP*     2.9    24.0    +      -       -      +
    126A  ARG*     3.6     7.1    +      -       -      +
    140A  ARG*     3.0    16.8    +      -       -      -
    233A  ASP*     6.5     0.4    -      -       +      -
    236A  LEU*     6.4     0.4    -      -       +      -
    237A  ILE*     4.4    13.9    -      -       +      -
----------------------------------------------------------
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Residues in contact with ASP 66 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     55A  LEU*     4.2    18.0    -      -       +      +
     59A  LYS*     4.3    15.9    -      -       -      +
     61A  LEU*     3.6    25.5    -      -       +      +
     62A  LYS*     3.6    16.3    +      -       -      +
     63A  SER*     3.3    33.2    +      -       -      +
     64A  MET      3.3     0.6    -      -       -      -
     65A  THR*     1.4    75.0    -      -       -      +
     67A  ILE*     1.3    64.8    +      -       -      +
     69A  LEU*     3.9    12.7    -      -       -      +
     70A  LEU*     3.1    25.3    +      -       -      +
----------------------------------------------------------
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Residues in contact with ILE 67 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     61A  LEU*     3.9    31.2    -      -       +      +
     63A  SER      3.3    12.1    +      -       -      +
     64A  MET*     3.0    11.6    +      -       -      +
     66A  ASP*     1.3    76.1    -      -       -      +
     68A  TYR*     1.4    54.6    +      -       +      +
     70A  LEU*     3.4     8.3    +      -       +      +
     71A  ASN*     2.8    41.9    +      -       -      +
    142A  VAL*     3.9    35.4    -      -       +      +
    145A  GLY*     3.7    17.5    -      -       -      +
    146A  VAL*     4.0    16.8    -      -       +      +
    149A  SER*     3.5    21.5    -      -       -      +
----------------------------------------------------------
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Residues in contact with TYR 68 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     64A  MET*     3.2    50.9    +      -       +      +
     65A  THR      3.3     0.9    +      -       -      +
     67A  ILE*     1.4    72.2    -      -       -      +
     69A  LEU*     1.3    61.0    +      -       -      +
     71A  ASN*     3.4     2.1    +      -       -      +
     72A  LEU*     2.9    30.6    +      -       -      +
    118A  PHE*     4.1    21.5    -      +       +      +
    121A  LEU*     3.8    48.4    -      -       +      +
    122A  LEU*     3.6    25.4    -      -       +      -
    125A  ASP*     4.1     7.4    -      -       +      -
    144A  PHE*     4.6     1.9    -      -       -      -
    145A  GLY*     3.6    16.9    -      -       -      -
    148A  THR*     2.7    34.8    +      -       -      +
    149A  SER*     3.8    12.1    -      -       -      -
----------------------------------------------------------
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Residues in contact with LEU 69 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     51A  VAL*     4.7     1.0    -      -       -      +
     55A  LEU*     3.8    21.1    -      -       +      +
     65A  THR*     2.9    33.2    +      -       +      +
     66A  ASP*     3.9    17.3    -      -       -      +
     67A  ILE      3.4     0.2    -      -       -      -
     68A  TYR*     1.3    76.8    -      -       -      +
     70A  LEU*     1.3    59.3    +      -       -      +
     72A  LEU*     3.5     5.6    +      -       -      +
     73A  ALA*     3.2    21.8    +      -       -      +
    122A  LEU*     4.0    24.9    -      -       +      -
    236A  LEU*     5.0    12.3    -      -       +      -
    237A  ILE*     5.6     1.3    -      -       +      -
    240A  ILE*     4.4     5.8    -      -       +      -
    297A  TYR*     3.5    38.1    +      -       +      +
    304A  PHE*     4.9    14.4    -      -       +      -
----------------------------------------------------------
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Residues in contact with LEU 70 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     52A  ILE*     3.9    23.3    -      -       +      +
     55A  LEU*     3.6    12.7    -      -       +      +
     56A  ILE*     3.7    29.2    -      -       +      -
     61A  LEU*     3.8    29.4    -      -       +      -
     66A  ASP      3.1    17.5    +      -       -      +
     67A  ILE*     3.6    10.1    -      -       +      +
     69A  LEU*     1.3    75.1    -      -       -      +
     71A  ASN*     1.4    62.9    +      -       -      +
     73A  ALA*     3.2     6.7    +      -       -      +
     74A  ILE*     3.0    47.6    +      -       +      +
   1106A  OLC      6.2     2.7    -      -       +      -
----------------------------------------------------------
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Residues in contact with ASN 71 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     67A  ILE*     2.8    34.5    +      -       -      +
     68A  TYR      3.8     0.2    -      -       -      +
     70A  LEU*     1.4    78.7    -      -       -      +
     72A  LEU*     1.3    61.1    +      -       -      +
     74A  ILE*     3.4    11.3    +      -       -      +
     75A  SER*     3.0    27.5    +      -       -      -
    118A  PHE*     3.5    28.1    -      -       +      -
    149A  SER*     3.2    24.8    +      -       -      -
    153A  TRP*     2.7    33.5    +      -       -      -
   1106A  OLC      3.9    16.5    -      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 72 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     68A  TYR      2.9    18.1    +      -       -      +
     69A  LEU*     3.7     7.4    -      -       +      +
     70A  LEU      3.3     0.2    -      -       -      -
     71A  ASN*     1.3    76.2    -      -       -      +
     73A  ALA*     1.4    60.0    +      -       -      +
     75A  SER*     3.0    16.7    +      -       -      -
     76A  ASP*     3.2    16.9    +      -       -      +
    115A  GLY*     3.4    35.9    -      -       -      +
    118A  PHE*     4.2     8.9    -      -       +      -
    119A  ILE*     3.8    22.4    -      -       +      -
    122A  LEU*     4.0    17.3    -      -       +      -
    240A  ILE*     4.3     6.3    -      -       +      -
    293A  ASN*     3.6    28.7    -      -       -      +
    297A  TYR*     3.8    14.4    -      -       -      +
----------------------------------------------------------
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Residues in contact with ALA 73 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     48A  ASN*     3.6    24.0    -      -       -      +
     51A  VAL*     4.2    17.0    -      -       +      -
     52A  ILE*     3.8    24.0    -      -       +      -
     69A  LEU      3.2    14.7    +      -       -      +
     70A  LEU*     3.2     9.4    +      -       -      +
     72A  LEU*     1.4    73.7    -      -       -      +
     74A  ILE*     1.4    62.8    +      -       -      +
     76A  ASP*     3.2     6.0    +      -       -      +
     77A  LEU*     3.1    22.0    +      -       -      +
    297A  TYR*     5.5     1.7    +      -       +      +
----------------------------------------------------------
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Residues in contact with ILE 74 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     52A  ILE*     4.4    14.1    -      -       +      -
     70A  LEU*     3.0    44.1    +      -       +      +
     71A  ASN*     3.7    17.9    -      -       -      +
     72A  LEU      3.4     0.4    -      -       -      -
     73A  ALA*     1.4    75.3    -      -       -      +
     75A  SER*     1.4    56.9    +      -       -      +
     77A  LEU*     3.0    13.1    +      -       +      +
     78A  PHE*     2.9    51.9    +      -       +      -
    153A  TRP*     4.0    13.7    -      -       +      -
   1106A  OLC      4.5    19.7    -      -       +      -
----------------------------------------------------------
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Residues in contact with SER 75 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     71A  ASN      3.0    11.4    +      -       -      -
     72A  LEU*     3.0    17.7    +      -       -      +
     74A  ILE*     1.4    73.3    -      -       -      +
     76A  ASP*     1.3    61.2    +      -       -      +
     78A  PHE*     3.9     5.4    -      -       -      -
     79A  PHE*     3.3    21.3    +      -       -      +
    111A  GLY*     3.5    19.3    -      -       -      +
    114A  SER*     3.2    29.5    -      -       -      -
    115A  GLY*     3.5    17.7    +      -       -      -
    118A  PHE*     4.5     0.2    -      -       -      -
    153A  TRP*     3.7    13.4    -      -       -      -
----------------------------------------------------------
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Residues in contact with ASP 76 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     48A  ASN*     3.4    18.3    -      -       -      +
     72A  LEU*     3.2    19.0    +      -       -      +
     73A  ALA*     3.2     9.7    +      -       -      +
     74A  ILE      3.2     0.8    -      -       -      -
     75A  SER*     1.3    77.4    -      -       -      +
     77A  LEU*     1.3    59.0    +      -       -      +
     79A  PHE*     3.4     7.6    +      -       -      +
     80A  LEU*     2.9    33.7    +      -       -      +
    115A  GLY*     6.1     0.7    -      -       -      -
    289A  HIS*     4.5     7.9    +      -       -      +
    290A  CYS*     3.4    35.0    -      -       -      +
    293A  ASN*     3.5    27.3    +      -       -      +
    294A  PRO*     5.5     0.2    -      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 77 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     45A  PHE*     4.1    35.4    -      -       +      +
     48A  ASN*     3.7    23.8    -      -       +      -
     49A  MET*     4.0    17.7    -      -       +      +
     52A  ILE*     3.9    23.1    -      -       +      -
     73A  ALA      3.1     9.3    +      -       -      +
     74A  ILE*     3.0    14.1    +      -       +      +
     76A  ASP*     1.3    73.9    -      -       -      +
     78A  PHE*     1.4    61.1    +      -       +      +
     80A  LEU*     3.2    11.7    +      -       +      +
     81A  LEU*     2.9    42.2    +      -       +      +
----------------------------------------------------------
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Residues in contact with PHE 78 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     74A  ILE*     2.9    33.4    +      -       +      +
     75A  SER*     3.8    10.1    -      -       -      +
     77A  LEU*     1.4    77.7    -      -       +      +
     79A  PHE*     1.3    62.6    +      -       -      +
     81A  LEU*     3.5    26.6    +      -       +      +
     82A  THR*     3.6    14.6    -      -       -      +
    107A  LEU*     3.9    34.2    -      -       +      +
    110A  ILE*     4.5     8.1    -      -       +      -
    111A  GLY*     4.4     2.0    -      -       -      -
    153A  TRP*     3.8    18.4    -      +       -      -
   1106A  OLC      3.4    55.6    -      -       +      -
----------------------------------------------------------
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Residues in contact with PHE 79 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     75A  SER      3.3    10.3    +      -       -      +
     76A  ASP*     3.4    12.1    -      -       -      +
     78A  PHE*     1.3    78.9    -      -       -      +
     80A  LEU*     1.4    58.7    +      -       -      +
     82A  THR*     2.7    28.4    +      -       -      -
     83A  VAL*     3.7     4.3    -      -       +      +
    107A  LEU      4.3     5.5    +      -       -      -
    108A  TYR*     3.3    66.2    -      +       -      +
    111A  GLY      4.1     1.6    -      -       -      -
    112A  PHE*     3.8    26.2    -      +       +      -
    248A  TRP*     3.9    19.7    -      +       -      -
    286A  GLY      5.0     0.2    -      -       -      -
    287A  MET*     3.6    30.5    -      -       +      -
    290A  CYS*     4.0    20.0    -      -       +      -
----------------------------------------------------------
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Residues in contact with LEU 80 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     40A  VAL*     3.7    21.5    -      -       +      +
     41A  PHE*     3.3    36.5    -      -       +      +
     44A  GLY*     3.5    27.8    -      -       -      +
     45A  PHE*     3.9     3.6    -      -       +      +
     48A  ASN*     3.6    13.9    -      -       -      +
     76A  ASP      2.9    21.9    +      -       -      +
     77A  LEU*     3.2    19.5    +      -       +      +
     79A  PHE*     1.4    70.4    -      -       -      +
     81A  LEU*     1.4    64.9    +      -       -      +
     82A  THR      3.1     2.2    -      -       -      -
     83A  VAL*     3.1    20.6    +      -       +      +
     84A  PRO*     3.3     9.7    -      -       -      +
    290A  CYS*     3.6    26.9    -      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 81 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     41A  PHE*     4.4     8.3    -      -       +      -
     45A  PHE*     5.4    13.5    -      -       +      -
     77A  LEU*     2.9    28.9    +      -       +      +
     78A  PHE*     3.8    27.1    -      -       +      +
     79A  PHE      3.5     0.6    -      -       -      -
     80A  LEU*     1.4    73.4    -      -       -      +
     82A  THR*     1.4    56.4    +      -       -      +
     84A  PRO*     3.2    16.4    -      -       -      +
     85A  PHE*     3.3    21.1    -      -       +      -
    104A  LEU*     4.8     1.8    -      -       +      -
    107A  LEU*     5.0    15.7    -      -       +      -
   1104A  OLC      4.8    15.7    -      -       +      +
----------------------------------------------------------
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Residues in contact with THR 82 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     78A  PHE      3.6    16.4    -      -       -      +
     79A  PHE      2.7    17.2    +      -       -      +
     80A  LEU      3.1     0.2    -      -       -      -
     81A  LEU*     1.4    75.1    -      -       -      +
     83A  VAL*     1.3    64.4    +      -       -      +
     85A  PHE*     3.0    18.2    +      -       -      +
     86A  TRP*     2.9    39.1    +      -       -      -
    104A  LEU*     3.4    40.6    -      -       +      +
    107A  LEU*     3.8    13.5    -      -       +      -
    108A  TYR*     3.7    12.4    -      -       -      +
----------------------------------------------------------
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Residues in contact with VAL 83 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     37A  TYR*     3.3    44.0    -      -       +      +
     40A  VAL*     4.9     2.7    -      -       +      -
     41A  PHE*     4.3     9.4    -      -       +      +
     79A  PHE*     3.7    16.8    -      -       +      +
     80A  LEU*     3.1    17.2    +      -       +      +
     82A  THR*     1.3    80.5    +      -       -      +
     84A  PRO*     1.4    62.2    -      -       +      +
     85A  PHE      3.2     0.2    +      -       -      -
     86A  TRP*     3.3    12.8    +      -       +      +
     87A  ALA*     3.2    20.3    +      -       -      +
    108A  TYR*     5.9     0.2    -      -       +      -
    287A  MET*     3.8    31.2    -      -       +      -
    290A  CYS*     4.8     7.4    -      -       -      -
----------------------------------------------------------
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Residues in contact with PRO 84 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     37A  TYR*     5.8     1.1    -      -       +      +
     38A  SER*     6.5     0.4    -      -       -      -
     41A  PHE*     3.6    36.3    -      -       +      -
     80A  LEU      3.3     9.6    -      -       -      +
     81A  LEU      3.2    19.3    -      -       -      +
     82A  THR      3.5     0.7    -      -       -      -
     83A  VAL*     1.4    89.1    -      -       +      +
     85A  PHE*     1.4    57.8    +      -       -      +
     87A  ALA*     3.5     4.6    -      -       +      +
     88A  HIS*     3.4    15.6    +      -       -      +
   1104A  OLC      3.0    42.2    -      -       +      +
   1105A  OLC      3.4    21.9    -      -       +      +
----------------------------------------------------------
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Residues in contact with PHE 85 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     81A  LEU*     3.3    28.0    -      -       +      -
     82A  THR      3.0     7.5    +      -       -      +
     84A  PRO*     1.4    76.1    -      -       +      +
     86A  TRP*     1.4    59.8    +      -       +      +
     87A  ALA      3.3     0.2    -      -       -      -
     88A  HIS      3.4     1.2    +      -       -      -
     89A  TYR*     3.1    28.6    +      -       -      +
     94A  TRP*     3.9     8.6    -      -       +      -
     96A  PHE*     3.7    45.6    -      +       -      -
    100A  MET*     4.1    21.3    -      -       +      -
    104A  LEU*     3.6    39.5    -      -       +      -
   1104A  OLC      3.7    32.5    -      -       +      -
----------------------------------------------------------
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Residues in contact with TRP 86 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     37A  TYR*     3.8     9.1    -      +       +      -
     82A  THR*     2.9    41.4    +      -       -      -
     83A  VAL*     3.3    10.2    +      -       +      +
     85A  PHE*     1.4    72.4    -      -       +      +
     87A  ALA*     1.4    59.7    +      -       -      +
     89A  TYR*     3.7     6.9    -      +       -      +
     90A  ALA*     3.0    29.5    +      -       -      +
     94A  TRP*     3.9    25.6    -      +       -      -
    104A  LEU*     4.1    25.8    -      -       +      -
    105A  THR*     3.9    24.5    -      -       -      -
    108A  TYR*     3.7    13.3    -      +       +      -
    178A  CYS*     4.3    11.9    -      -       -      -
   1101A  MRV      3.5    87.2    +      +       +      +
----------------------------------------------------------
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Residues in contact with ALA 87 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     34A  PRO*     3.5    28.6    -      -       +      +
     37A  TYR*     3.7    25.5    -      -       +      -
     38A  SER*     5.1     1.8    -      -       -      +
     83A  VAL      3.2    12.5    +      -       -      +
     84A  PRO*     3.5    13.9    -      -       +      +
     85A  PHE      3.3     0.2    -      -       -      -
     86A  TRP*     1.4    74.5    -      -       -      +
     88A  HIS*     1.4    63.0    +      -       -      +
     90A  ALA*     3.4     6.9    -      -       -      +
     91A  ALA*     3.2    17.7    +      -       -      +
   1105A  OLC      4.4    12.3    -      -       -      +
----------------------------------------------------------
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Residues in contact with HIS 88 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     84A  PRO      3.4     5.9    +      -       -      +
     85A  PHE      3.8     7.0    -      -       -      +
     86A  TRP      3.4     0.2    -      -       -      -
     87A  ALA*     1.4    74.5    -      -       -      +
     89A  TYR*     1.4    54.9    +      -       -      +
     91A  ALA*     3.2     3.5    +      -       -      +
     92A  ALA*     2.7    47.7    +      -       +      +
     93A  GLN      3.8    10.5    -      -       -      -
     95A  ASP*     2.9    28.3    +      -       +      -
     96A  PHE*     3.6    20.4    -      +       +      -
   1104A  OLC      3.6    33.8    +      -       -      -
   1105A  OLC      2.8    44.1    +      -       -      -
----------------------------------------------------------
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Residues in contact with TYR 89 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     85A  PHE      3.1    18.0    +      -       -      +
     86A  TRP*     3.7     8.3    -      +       -      +
     88A  HIS*     1.4    75.1    -      -       -      +
     90A  ALA*     1.4    62.3    +      -       -      +
     92A  ALA      3.1    21.7    -      -       -      +
     93A  GLN*     3.7    11.0    -      -       -      -
     94A  TRP*     3.7    34.8    -      +       +      -
     96A  PHE*     5.3     0.4    -      -       +      -
    176A  TYR      4.0    17.5    -      -       -      -
    177A  THR*     3.7    14.8    -      -       +      +
    178A  CYS*     3.1    40.2    +      -       +      -
    179A  SER*     5.1     1.9    -      -       -      -
   1101A  MRV      3.6    31.0    -      -       +      -
----------------------------------------------------------
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Residues in contact with ALA 90 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     26A  LYS      4.7     1.9    -      -       -      +
     29A  ALA*     4.1    18.7    -      -       +      +
     30A  ALA*     3.3    20.0    +      -       -      +
     33A  LEU*     4.2    25.1    -      -       +      -
     34A  PRO*     4.4     1.6    -      -       +      -
     86A  TRP      3.0    19.1    +      -       -      +
     87A  ALA*     3.4     7.2    -      -       -      +
     89A  TYR*     1.4    76.7    -      -       -      +
     91A  ALA*     1.3    58.8    +      -       -      +
     92A  ALA      3.7     2.3    +      -       -      +
   1101A  MRV      5.8     1.6    -      -       -      +
----------------------------------------------------------
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Residues in contact with ALA 91 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     30A  ALA*     3.9    19.9    -      -       -      +
     34A  PRO*     3.7    15.0    -      -       +      +
     87A  ALA      3.2    11.0    +      -       -      +
     88A  HIS*     3.5     9.9    -      -       -      +
     90A  ALA*     1.3    78.2    -      -       -      +
     92A  ALA*     1.4    59.3    +      -       +      +
   1105A  OLC      4.6    11.0    -      -       -      +
----------------------------------------------------------
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Residues in contact with ALA 92 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     88A  HIS*     2.7    36.9    +      -       +      +
     89A  TYR*     3.1    11.0    -      -       -      +
     90A  ALA      4.4     1.9    -      -       -      +
     91A  ALA*     1.4    75.1    -      -       +      +
     93A  GLN*     1.4    65.6    -      -       +      +
     95A  ASP*     4.4     4.5    -      -       -      +
    175A  HIS*     5.3     4.8    -      -       -      -
----------------------------------------------------------
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A short description of the analytical approach
The contact analysis used in this page is based upon the approach developed in: Sobolev V., Wade R.C., Vriend G. and Edelman M. PROTEINS (1996) 25, 120-129. Contact legitimacy depends on the hydrophobic-hydrophilic properties of the contacting atoms. In order to define it, for each inter-atomic contact, eight atom classes have been introduced:


   I  Hydrophilic      - N and O that can donate and accept hydrogen bonds
                         (e.g., oxygen of hydroxyl group of Ser. or Thr)
  II  Acceptor         - N or O that can only accept a hydrogen bond
 III  Donor            - N that can only donate a hydrogen bond
  IV  Hydrophobic      - Cl, Br, I and all C atoms that are not in
                         aromatic rings and do not have a covalent bond to
                         a N or O atom
   V  Aromatic         - C in aromatic rings irrespective of any other 
                         bonds formed by the atom
  VI  Neutral          - C atoms that have a covalent bond to at least one
                         atom of class I or two or more atoms from class II
                         or III; atoms; S, F, P, and metal atoms in all cases
 VII  Neutral-donor    - C atoms that have a covalent bond with only one
                         atom of class III
VIII  Neutral-acceptor - C atoms that have a covalent bond with only 
                         one atom of class II
For each pair of contacts the state of legitimacy is shown below:

Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
  Atomic class           I  II  III   IV   V   VI  VII  VIII
------------------------------------------------------------
   I  (Hydrophilic)      +   +    +    -   +   +    +    +
  II  (Acceptor)         +   -    +    -   +   +    +    -
 III  (Donor)            +   +    -    -   +   +    -    +
  IV  (Hydrophobic)      -   -    -    +   +   +    +    +
   V  (Aromatic)         +   +    +    +   +   +    +    +
  VI  (Neutral)          +   +    +    +   +   +    +    +
 VII  (Neutral-donor)    +   +    -    +   +   +    -    +
VIII  (Neutral-acceptor) +   -    +    +   +   +    +    -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically assigned based on the atomic coordinates. However, in three cases (see below) the automatic assignment is currently ambiguous. In these cases, the user is advised to manually analyse the full list of contacts using LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are 
   considered "aromatic" (Class V) if the ring is approximately
   planar, and "hydrophobic" (Class IV) or "neutral" (Classes
   VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
   "hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
   "carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).

Please E-mail any questions and/or suggestions concerning this page to Vladimir.Sobolev@weizmann.ac.il