Contacts of the helix formed by residues 596 - 634 (chain C) in PDB entry 4N3Z
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ILE 596 (chain C).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
360A CYS* 4.1 16.6 - - + +
361A CYS* 4.5 4.9 - - - -
364A ALA* 3.7 32.8 - - + -
395A LEU* 4.1 24.9 - - + -
596B ILE* 4.2 17.3 - - + -
594C HIS* 5.2 7.2 - - + +
595C GLN* 1.3 83.2 - - - +
597C SER* 1.3 66.1 + - - +
598C ALA* 2.9 13.5 + - + +
599C LEU* 3.1 39.8 + - + +
600C VAL* 3.3 9.9 + - - +
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Residues in contact with SER 597 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
339A THR* 4.0 16.8 - - - +
590C GLU* 4.2 18.3 + - - -
595C GLN* 3.2 20.8 - - - +
596C ILE* 1.3 74.6 - - - +
598C ALA* 1.3 53.0 - - - +
600C VAL* 4.4 1.3 - - - -
601C LEU* 2.7 55.4 + - - +
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Residues in contact with ALA 598 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
339A THR* 6.0 0.4 - - - +
356A PHE* 5.1 3.8 - - + -
357A THR* 3.5 23.7 - - + +
360A CYS* 3.6 38.8 - - + -
596C ILE* 2.9 3.7 - - + -
597C SER* 1.3 78.1 - - - +
599C LEU* 1.3 57.6 + - - +
601C LEU* 3.4 13.3 - - - +
602C ARG* 2.9 32.9 + - - +
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Residues in contact with LEU 599 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
357A THR* 4.6 5.6 - - - -
361A CYS* 3.7 21.3 - - - -
395A LEU* 4.3 12.8 - - + -
398A LEU* 3.6 39.9 - - + -
399A ASN* 3.6 24.9 - - - +
402A GLN* 3.2 13.6 + - - +
596B ILE* 4.4 4.9 - - + -
599B LEU* 3.6 19.5 - - + -
596C ILE* 3.1 27.3 + - + +
598C ALA* 1.3 75.8 - - - +
600C VAL* 1.3 67.4 + - - +
602C ARG* 3.2 6.0 + - - +
603C ALA* 3.0 19.6 + - - +
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Residues in contact with VAL 600 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
595B GLN 5.5 1.1 - - - +
599B LEU* 3.5 28.9 - - + -
602B ARG* 3.9 6.0 + - - +
589C SER* 3.7 31.0 - - - +
590C GLU* 4.2 15.0 - - + +
595C GLN* 3.7 24.0 - - - +
596C ILE 3.3 9.5 + - - +
597C SER* 3.8 8.5 - - - +
599C LEU* 1.3 77.2 - - - +
601C LEU* 1.3 59.8 + - + +
603C ALA* 3.2 6.6 + - - +
604C GLN* 3.0 39.5 + - - +
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Residues in contact with LEU 601 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
339A THR* 4.5 16.2 - - + +
344A PRO* 5.7 11.2 - - + -
347A LEU* 3.0 29.0 - - + +
357A THR* 5.6 0.2 - - + -
590C GLU* 5.7 4.0 - - - +
597C SER* 2.7 42.4 + - - +
598C ALA* 3.4 23.6 - - - +
600C VAL* 1.3 71.2 - - + +
602C ARG* 1.3 61.7 + - - +
604C GLN* 3.6 24.7 - - - +
605C ALA* 3.5 14.4 + - - +
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Residues in contact with ARG 602 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
347A LEU* 3.1 48.8 + - + +
348A MET 4.4 4.4 + - - -
350A GLY 4.9 1.0 + - - -
354A TYR* 3.3 33.5 - - - +
357A THR* 3.5 19.6 + - + -
399A ASN* 4.3 5.5 + - - -
402A GLN* 3.2 25.8 - - + +
403A GLU* 2.8 37.5 + - - +
406A MET* 3.3 26.2 - - - +
598C ALA 2.9 22.6 + - - +
599C LEU* 3.2 5.4 - - - +
601C LEU* 1.3 73.6 - - - +
603C ALA* 1.3 59.5 + - - +
604C GLN 3.0 1.1 - - - -
605C ALA* 2.8 24.3 + - - +
606C SER* 3.0 15.5 + - - -
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Residues in contact with ALA 603 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
402A GLN* 3.5 22.6 - - + +
599B LEU* 4.0 18.2 - - + +
602B ARG* 4.2 21.5 - - + +
603B ALA* 5.5 0.9 - - - +
606B SER* 5.5 0.3 + - - -
599C LEU 3.0 4.4 + - - +
600C VAL 3.5 9.2 - - - +
602C ARG* 1.3 78.2 - - - +
604C GLN* 1.3 58.4 + - - +
606C SER* 3.5 10.0 - - - -
607C GLU* 3.0 32.4 + - - +
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Residues in contact with GLN 604 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
602B ARG* 3.6 22.6 - - - +
590C GLU* 5.2 10.5 + - - +
600C VAL* 3.0 28.4 + - - +
601C LEU* 3.6 24.4 - - - +
602C ARG 2.9 0.8 + - - -
603C ALA* 1.3 73.4 - - - +
605C ALA* 1.3 66.4 + - - +
607C GLU* 3.1 7.1 + - - +
608C ILE* 2.9 41.5 + - + +
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Residues in contact with ALA 605 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
344A PRO 5.4 3.1 - - - +
347A LEU* 4.5 18.6 - - + -
348A MET* 4.8 8.1 - - + +
406A MET* 4.7 12.1 - - - -
601C LEU 3.5 9.3 + - - +
602C ARG 2.8 11.1 + - - +
604C GLN* 1.3 75.2 - - - +
606C SER* 1.3 62.3 + - - +
608C ILE* 3.6 10.9 + - - +
609C LEU* 3.0 25.3 + - - +
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Residues in contact with SER 606 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
402A GLN* 4.0 5.7 + - - +
405A ILE* 3.5 30.7 - - - +
406A MET* 3.3 33.2 - - - +
606B SER* 4.9 3.1 - - - -
602C ARG 3.0 8.5 + - - -
603C ALA* 3.5 14.1 - - - -
605C ALA* 1.3 75.3 - - - +
607C GLU* 1.3 57.4 + - - +
608C ILE 3.1 0.2 - - - -
609C LEU* 2.9 23.0 + - - +
610C LEU* 3.1 17.5 + - - +
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Residues in contact with GLU 607 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
602B ARG* 2.3 59.0 + - - +
606B SER* 4.6 10.3 + - - -
609B LEU* 6.0 2.0 - - + -
586C LYS* 4.0 19.5 + - - +
603C ALA 3.0 18.9 - - - +
604C GLN* 3.3 8.7 - - - +
606C SER* 1.3 78.9 - - - +
608C ILE* 1.3 63.3 + - + +
610C LEU* 3.9 11.7 - - + +
611C GLU* 3.4 34.9 + - + +
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Residues in contact with ILE 608 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
604C GLN* 2.9 36.7 + - + +
605C ALA* 3.8 9.2 - - - +
607C GLU* 1.3 80.7 - - + +
609C LEU* 1.3 63.8 + - - +
610C LEU 3.2 0.6 + - - -
611C GLU* 3.6 7.3 + - - +
612C GLU* 3.6 19.4 + - - +
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Residues in contact with LEU 609 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
348A MET* 5.1 7.2 - - + -
406A MET* 3.7 27.8 - - + -
409A ALA* 3.5 31.0 - - + -
410A LYS* 3.6 39.7 - - + +
413A GLU* 4.8 3.4 - - - +
605C ALA 3.0 16.1 + - - +
606C SER 2.9 7.1 + - - +
608C ILE* 1.3 79.6 - - - +
610C LEU* 1.3 54.4 + - - +
611C GLU 3.5 0.2 - - - -
612C GLU* 2.9 46.7 - - - +
613C LEU* 3.1 18.5 - - + +
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Residues in contact with LEU 610 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
405A ILE* 4.4 7.9 - - + +
409A ALA* 4.2 8.7 - - + -
606B SER* 3.1 47.1 - - - +
609B LEU* 3.7 21.8 - - + -
610B LEU* 3.7 32.3 - - + +
613B LEU* 3.6 10.6 - - + +
606C SER 3.1 13.4 + - - +
607C GLU* 4.1 5.4 - - - +
608C ILE 3.2 0.4 - - - -
609C LEU* 1.3 75.3 - - - +
611C GLU* 1.3 56.6 + - - +
612C GLU 3.1 4.7 - - - -
613C LEU* 3.0 41.7 + - + +
614C GLN* 3.4 8.1 + - - +
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Residues in contact with GLU 611 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
609B LEU* 4.6 14.5 - - + +
607C GLU* 3.4 22.6 + - - +
608C ILE* 3.6 8.1 + - - +
609C LEU 3.5 0.4 - - - -
610C LEU* 1.3 75.9 - - - +
612C GLU* 1.3 59.9 + - - +
614C GLN* 4.2 16.1 - - - +
615C GLN* 3.2 19.9 - - - +
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Residues in contact with GLU 612 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
413A GLU* 4.2 14.5 - - + +
608C ILE 3.6 9.2 + - - +
609C LEU* 2.9 45.4 - - - +
610C LEU 3.1 0.8 - - - -
611C GLU* 1.3 77.4 - - - +
613C LEU* 1.3 67.9 + - + +
614C GLN 3.0 5.4 - - - -
615C GLN* 2.9 12.4 + - - +
616C GLY* 2.8 23.7 + - - -
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Residues in contact with LEU 613 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
409A ALA* 3.7 23.8 - - + +
412A LEU* 4.3 18.0 - - + +
413A GLU* 3.6 41.5 - - + +
416A LEU* 4.1 11.2 - - + +
610B LEU* 5.2 0.2 - - + -
613B LEU* 3.7 12.2 - - + +
609C LEU* 3.1 18.6 - - + +
610C LEU* 3.0 33.3 + - + +
612C GLU* 1.3 87.0 - - + +
614C GLN* 1.3 52.1 + - - +
615C GLN 3.4 0.2 - - - -
616C GLY* 3.6 4.4 - - - +
617C LEU* 2.8 32.9 + - - +
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Residues in contact with GLN 614 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
609B LEU* 3.5 27.4 - - + +
612B GLU* 5.6 0.8 + - - -
613B LEU* 3.6 22.3 - - + +
610C LEU 3.4 10.0 + - - +
611C GLU* 4.3 13.3 - - - +
612C GLU 3.0 0.6 - - - -
613C LEU* 1.3 78.1 - - - +
615C GLN* 1.3 72.7 + - - +
617C LEU* 4.2 1.6 - - - +
618C SER* 3.1 29.1 + - - -
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Residues in contact with GLN 615 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
611C GLU 3.2 18.8 - - - +
612C GLU* 2.9 10.8 + - - +
614C GLN* 1.3 84.2 + - - +
616C GLY* 1.3 60.9 + - - +
618C SER* 2.8 22.3 + - - +
619C GLN* 2.9 25.5 + - + +
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Residues in contact with GLY 616 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
416A LEU* 3.5 17.0 - - - +
612C GLU 2.8 12.6 + - - -
613C LEU* 3.5 4.7 + - - -
614C GLN 3.2 0.2 - - - -
615C GLN* 1.3 78.6 - - - +
617C LEU* 1.3 50.7 + - - +
619C GLN* 3.6 3.6 - - - +
620C ALA* 2.7 34.5 + - - +
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Residues in contact with LEU 617 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
412A LEU* 6.2 1.1 - - + -
416A LEU* 3.6 12.0 - - + +
419A TRP* 5.1 0.4 - - + -
613B LEU* 3.8 36.8 - - + +
616B GLY* 4.1 17.7 - - - +
617B LEU* 4.0 34.3 - - + -
620B ALA* 4.7 2.2 - - + -
613C LEU 2.8 21.7 + - - +
614C GLN* 4.2 2.9 - - - +
616C GLY* 1.3 69.3 - - - +
618C SER* 1.3 67.0 + - - +
620C ALA* 3.1 8.5 + - + +
621C LYS* 2.9 49.1 + - + +
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Residues in contact with SER 618 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
614C GLN 3.1 17.3 + - - -
615C GLN* 2.8 22.0 + - - +
617C LEU* 1.3 76.7 - - - +
619C GLN* 1.3 69.2 + - - +
621C LYS* 3.0 23.0 + - - +
622C ARG* 2.9 37.8 + - - +
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Residues in contact with GLN 619 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
615C GLN* 2.9 22.2 + - + +
616C GLY* 4.0 2.9 - - - +
618C SER* 1.3 80.9 + - - +
620C ALA* 1.3 60.1 + - - +
622C ARG* 3.8 9.7 - - + +
623C ASP* 2.9 58.5 + - - +
----------------------------------------------------------
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Residues in contact with ALA 620 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
416A LEU* 4.2 13.5 - - + -
419A TRP* 3.6 24.2 - - + -
420A THR* 3.9 15.9 - - - +
616C GLY 2.7 22.9 + - - +
617C LEU* 3.1 12.1 + - + +
619C GLN* 1.3 72.7 - - - +
621C LYS* 1.3 56.9 + - - +
623C ASP* 3.9 1.6 - - - +
624C VAL* 3.0 35.7 + - - +
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Residues in contact with LYS 621 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
419A TRP* 4.3 7.6 - - + -
616B GLY 5.6 0.9 - - - +
620B ALA* 4.3 25.8 - - + -
617C LEU* 2.9 28.5 + - + +
618C SER* 3.0 26.0 + - - +
620C ALA* 1.3 78.7 - - - +
622C ARG* 1.3 67.4 + - - +
624C VAL* 3.6 1.9 + - - +
625C GLN* 3.1 34.9 + - + +
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Residues in contact with ARG 622 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
618C SER* 2.9 26.1 + - - +
619C GLN* 3.5 10.7 + - + +
620C ALA 3.4 0.2 - - - -
621C LYS* 1.3 85.6 - - - +
623C ASP* 1.3 64.6 + - - +
625C GLN* 3.6 8.4 + - - +
626C GLU* 3.0 26.9 + - - +
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Residues in contact with ASP 623 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
420A THR* 4.7 18.5 + - + +
619C GLN* 2.9 46.8 + - - +
620C ALA* 4.1 3.5 - - - +
622C ARG* 1.3 80.9 - - - +
624C VAL* 1.3 62.6 + - - +
625C GLN 3.3 0.2 - - - -
626C GLU* 2.9 37.2 - - - +
627C GLN* 3.2 14.2 - - - +
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Residues in contact with VAL 624 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
419A TRP* 3.5 27.6 - - + -
420A THR* 4.3 12.1 - - - +
423A ILE* 3.6 28.0 - - + -
624B VAL* 3.5 43.7 - - + -
620C ALA 3.0 22.6 + - - +
621C LYS 4.0 2.7 - - - +
622C ARG 3.4 0.2 - - - -
623C ASP* 1.3 76.3 - - - +
625C GLN* 1.3 60.8 + - - +
627C GLN* 3.1 6.9 + - - +
628C MET* 3.0 27.1 + - + +
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Residues in contact with GLN 625 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
623B ASP* 6.3 0.4 - - - +
624B VAL* 3.6 22.0 - - - +
627B GLN* 2.9 34.8 + - - -
621C LYS* 3.1 20.2 + - + +
622C ARG* 3.9 9.2 - - - +
623C ASP 3.3 0.2 - - - -
624C VAL* 1.3 75.3 - - - +
626C GLU* 1.3 59.3 + - - +
628C MET* 3.1 9.6 + - - +
629C ALA* 3.0 25.6 + - - +
701C PO4 2.9 31.5 + - - +
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Residues in contact with GLU 626 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
622C ARG 3.0 12.1 + - - +
623C ASP* 2.9 46.2 - - - +
625C GLN* 1.3 75.5 - - - +
627C GLN* 1.3 72.6 + - + +
629C ALA* 3.5 14.9 - - - +
630C VAL* 3.1 22.2 - - - +
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Residues in contact with GLN 627 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
420A THR 5.4 0.2 - - - +
423A ILE* 4.6 3.4 - - + -
424A ALA* 3.5 33.7 - - + +
427A VAL* 3.3 32.3 - - + +
428A GLN* 3.2 26.7 + - - +
623C ASP 3.2 14.1 + - - +
624C VAL* 3.1 12.9 + - - +
626C GLU* 1.3 93.4 + - - +
628C MET* 1.3 62.9 + - - +
629C ALA 3.2 0.2 - - - -
630C VAL* 3.3 16.5 + - - +
631C LEU 3.2 15.4 + - - -
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Residues in contact with MET 628 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
423A ILE* 5.9 1.1 - - - -
427A VAL* 4.3 17.9 - - - -
624B VAL* 3.5 41.7 - - + +
627B GLN* 4.0 17.0 - - + +
628B MET* 3.7 28.9 - - + +
631B LEU* 3.6 7.8 - - + +
624C VAL* 3.0 19.9 + - + +
625C GLN* 3.1 26.7 + - - +
627C GLN* 1.3 78.8 - - - +
629C ALA* 1.3 55.7 + - - +
631C LEU* 3.1 14.9 + - - +
632C MET* 3.0 29.6 + - - +
701C PO4 3.5 10.5 - - - +
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Residues in contact with ALA 629 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
625C GLN 3.0 11.5 + - - +
626C GLU* 3.5 16.2 - - - +
627C GLN 3.2 0.2 - - - -
628C MET* 1.3 78.0 - - - +
630C VAL* 1.3 57.8 + - + +
632C MET* 3.2 12.6 - - + +
633C GLN* 3.2 18.7 + - - +
701C PO4 3.4 11.0 + - - +
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Residues in contact with VAL 630 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
427A VAL* 3.8 18.8 - - + +
428A GLN* 5.0 6.5 - - + +
626C GLU 3.1 19.1 - - - +
627C GLN* 3.3 18.4 - - - +
628C MET 3.2 0.6 - - - -
629C ALA* 1.3 72.5 - - + +
631C LEU* 1.3 64.8 + - - +
632C MET 3.1 1.8 - - - -
633C GLN* 3.0 46.1 + - - +
634C SER* 3.3 4.2 + - - -
----------------------------------------------------------
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Residues in contact with LEU 631 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
427A VAL* 3.9 29.8 - - + +
430A ILE* 3.8 31.6 - - + -
628B MET* 4.8 13.7 - - + +
631B LEU* 4.2 37.9 - - + +
632B MET* 5.5 3.8 - - + -
627C GLN 3.2 11.1 + - - +
628C MET* 3.1 18.7 + - - +
630C VAL* 1.3 77.5 - - - +
632C MET* 1.3 60.7 + - - +
634C SER* 3.3 30.3 - - - +
----------------------------------------------------------
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Residues in contact with MET 632 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
631B LEU* 3.9 17.3 - - + -
628C MET 3.0 13.5 + - - +
629C ALA* 3.2 15.5 - - + +
631C LEU* 1.3 75.2 - - - +
633C GLN* 1.3 61.7 + - - +
634C SER 3.1 9.0 + - - +
635C ARG* 4.6 11.3 + - - +
701C PO4 3.3 34.1 - - - +
----------------------------------------------------------
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Residues in contact with GLN 633 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
629C ALA 3.2 7.2 + - - +
630C VAL* 3.0 34.6 + - - +
632C MET* 1.3 76.5 - - - +
634C SER* 1.3 62.3 + - - +
635C ARG* 3.2 8.2 + - - +
----------------------------------------------------------
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Residues in contact with SER 634 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
430A ILE 5.0 11.6 + - - -
630C VAL 3.3 4.6 + - - -
631C LEU* 3.3 32.4 - - - +
632C MET* 3.1 4.2 - - - +
633C GLN* 1.3 77.6 - - - +
635C ARG* 1.3 73.6 + - - +
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il