Contacts of the helix formed by residues 583 - 631 (chain E) in PDB entry 4PKY
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with GLU 583 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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582E GLY* 1.3 85.5 - - - +
584E PHE* 1.3 72.7 + - + +
585E GLU 3.2 1.3 - - - +
586E VAL* 3.7 10.2 + - - +
587E LEU* 3.6 22.6 + - - +
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Residues in contact with PHE 584 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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582E GLY 4.4 0.4 - - - +
583E GLU* 1.3 85.3 - - + +
585E GLU* 1.3 72.1 + - + +
587E LEU* 3.4 14.5 + - + +
588E ALA* 3.2 28.0 + - + +
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Residues in contact with GLU 585 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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582E GLY* 3.7 27.5 + - - +
583E GLU 3.2 1.2 - - - +
584E PHE* 1.3 85.4 - - + +
586E VAL* 1.3 62.8 + - + +
587E LEU 3.3 0.2 - - - -
588E ALA* 3.4 8.5 + - - +
589E LEU* 3.2 32.7 + - + +
586F VAL* 5.5 6.7 - - + +
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Residues in contact with VAL 586 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
582E GLY* 3.1 27.4 - - - +
583E GLU* 3.7 8.5 + - - +
584E PHE 3.3 0.4 - - - -
585E GLU* 1.3 77.1 - - - +
587E LEU* 1.3 61.6 + - + +
588E ALA 3.2 0.2 - - - -
589E LEU* 3.4 8.0 + - - +
590E GLN* 3.0 48.2 + - - +
585F GLU 5.5 2.0 - - - +
586F VAL* 4.1 26.2 - - + -
589F LEU* 3.8 12.6 - - + -
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Residues in contact with LEU 587 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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583E GLU 3.6 15.7 + - - +
584E PHE* 3.4 15.1 + - + +
585E GLU 3.3 0.2 - - - -
586E VAL* 1.3 76.9 - - + +
588E ALA* 1.3 61.0 + - - +
590E GLN* 3.5 25.7 - - - +
591E ALA* 3.0 28.2 + - - +
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Residues in contact with ALA 588 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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584E PHE* 3.2 22.9 + - + +
585E GLU* 3.6 12.3 - - - +
586E VAL 3.2 0.4 - - - -
587E LEU* 1.3 79.7 - - - +
589E LEU* 1.3 59.0 + - + +
591E ALA* 3.2 6.9 + - - +
592E SER* 2.9 34.8 + - - +
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Residues in contact with LEU 589 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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585E GLU* 3.2 20.3 + - + +
586E VAL* 3.4 7.6 + - - +
588E ALA* 1.3 78.0 - - + +
590E GLN* 1.3 59.9 + - - +
592E SER* 3.8 4.4 - - - -
593E LEU* 2.9 30.3 + - - +
586F VAL* 3.8 35.0 - - + +
589F LEU* 4.1 20.8 - - + +
590F GLN* 4.4 24.5 - - + +
593F LEU* 4.0 25.3 - - + +
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Residues in contact with GLN 590 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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586E VAL* 3.0 41.4 + - - +
587E LEU* 3.5 25.7 - - - +
589E LEU* 1.3 76.3 - - - +
591E ALA* 1.3 58.5 + - - +
593E LEU* 3.4 5.0 + - - +
594E ARG* 3.1 37.2 + - + +
589F LEU* 3.7 22.4 - - + +
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Residues in contact with ALA 591 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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587E LEU 3.0 18.4 + - - +
588E ALA* 3.6 6.5 - - - +
590E GLN* 1.3 79.3 - - - +
592E SER* 1.3 56.6 + - - +
594E ARG* 4.0 4.8 - - - +
595E LYS* 3.1 26.5 + - - +
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Residues in contact with SER 592 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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588E ALA* 2.9 21.2 + - - +
589E LEU* 3.8 4.8 - - - +
591E ALA* 1.3 74.9 - - - +
593E LEU* 1.3 60.8 + - - +
595E LYS* 3.2 17.2 + - - +
596E ALA* 3.0 24.8 + - - +
593F LEU* 3.4 30.3 - - - +
597F GLN* 5.7 1.8 - - - -
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Residues in contact with LEU 593 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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589E LEU 2.9 17.8 + - - +
590E GLN* 3.7 5.2 - - - +
591E ALA 3.3 0.2 - - - -
592E SER* 1.3 75.5 - - - +
594E ARG* 1.3 86.6 + - - +
596E ALA* 3.3 2.6 + - - +
597E GLN* 3.0 43.5 + - - +
589F LEU* 4.2 23.3 - - + +
592F SER* 3.7 18.2 - - - +
593F LEU* 3.5 40.4 - - + +
596F ALA* 4.1 9.6 - - + -
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Residues in contact with ARG 594 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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590E GLN* 3.1 19.1 + - + +
591E ALA* 4.1 5.4 - - - +
593E LEU* 1.3 102.0 - - - +
595E LYS* 1.3 56.4 + - - +
597E GLN* 3.1 30.7 + - - +
598E MET* 3.0 28.4 + - - +
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Residues in contact with LYS 595 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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591E ALA 3.1 19.3 + - - +
592E SER* 3.5 15.4 + - - +
593E LEU 3.1 0.6 - - - -
594E ARG* 1.3 75.3 - - - +
596E ALA* 1.3 70.7 + - - +
598E MET* 3.1 25.3 + - + +
599E GLN* 3.0 42.2 + - - +
597F GLN* 6.0 3.4 - - - +
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Residues in contact with ALA 596 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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592E SER 3.0 15.9 + - - +
593E LEU 3.7 4.9 - - - +
595E LYS* 1.3 77.0 - - - +
597E GLN* 1.3 54.9 + - - +
599E GLN* 2.9 31.7 + - - +
600E ASN* 2.5 23.4 + - - -
593F LEU* 4.6 1.8 - - + -
596F ALA* 3.8 24.5 - - + -
597F GLN* 4.5 12.6 - - + -
600F ASN* 4.0 11.0 - - - +
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Residues in contact with GLN 597 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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593E LEU* 3.0 33.7 + - + +
594E ARG* 3.1 43.3 + - - +
596E ALA* 1.3 75.6 - - - +
598E MET* 1.3 60.9 + - - +
600E ASN* 3.7 9.3 - - - +
601E HIS* 3.1 39.5 + - + +
596F ALA* 4.6 10.9 - - + +
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Residues in contact with MET 598 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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594E ARG 3.0 14.7 + - - +
595E LYS* 3.1 31.8 + - + +
597E GLN* 1.3 74.0 - - - +
599E GLN* 1.3 75.1 + - + +
601E HIS* 3.6 6.7 + - - +
602E SER* 3.1 22.6 + - - -
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Residues in contact with GLN 599 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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595E LYS* 3.0 27.8 + - - +
596E ALA* 2.9 16.7 + - - +
598E MET* 1.3 88.2 - - + +
600E ASN* 1.3 51.4 + - - +
602E SER* 2.9 10.0 + - - -
603E LEU* 2.7 40.3 + - + +
600F ASN* 3.6 25.6 + - - +
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Residues in contact with ASN 600 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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596E ALA* 2.5 37.1 + - - +
597E GLN* 3.7 8.9 - - - +
599E GLN* 1.3 75.6 - - - +
601E HIS* 1.3 59.2 + - + +
603E LEU* 3.1 0.6 + - - -
604E GLU* 2.8 40.2 + - - +
596F ALA* 3.5 16.9 + - - +
599F GLN* 3.4 16.0 - - - +
600F ASN* 2.7 38.5 + - - +
603F LEU* 3.3 19.9 - - + +
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Residues in contact with HIS 601 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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597E GLN* 3.1 28.1 + - + +
598E MET* 4.0 6.5 - - - +
600E ASN* 1.3 80.2 - - + +
602E SER* 1.3 59.8 + - - +
604E GLU* 2.5 36.0 + - - +
605E MET* 3.5 22.7 + - - +
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Residues in contact with SER 602 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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598E MET* 3.1 15.3 + - - -
599E GLN* 2.9 15.3 + - - -
601E HIS* 1.3 78.4 - - - +
603E LEU* 1.3 63.0 + - - +
605E MET* 3.2 21.6 + - - +
606E THR* 3.4 9.5 + - - -
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Residues in contact with LEU 603 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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599E GLN* 2.7 19.8 + - + +
600E ASN 3.8 2.9 - - - +
602E SER* 1.3 68.8 - - - +
604E GLU* 1.3 55.8 + - - +
605E MET 2.9 4.7 - - - -
606E THR* 2.7 29.6 + - - +
607E LEU* 3.0 15.3 + - + +
600F ASN* 3.8 26.9 - - + +
603F LEU* 3.9 26.5 - - + +
604F GLU* 4.1 24.2 - - + +
607F LEU* 3.7 29.6 - - + +
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Residues in contact with GLU 604 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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600E ASN* 2.8 29.8 + - - +
601E HIS* 2.5 44.9 + - - +
603E LEU* 1.3 71.8 - - - +
605E MET* 1.3 58.2 + - - +
607E LEU* 3.9 16.3 - - + +
608E GLU* 3.6 26.3 + - - +
599F GLN* 6.0 0.2 + - - -
603F LEU* 4.2 18.4 - - + +
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Residues in contact with MET 605 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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601E HIS 3.5 13.0 - - - +
602E SER* 3.2 15.2 + - - +
603E LEU 2.8 0.2 + - - -
604E GLU* 1.3 80.3 - - - +
606E THR* 1.3 64.9 + - - +
607E LEU 3.2 0.9 - - - -
608E GLU* 3.4 13.6 + - - +
609E GLN* 3.6 16.0 + - - +
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Residues in contact with THR 606 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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602E SER* 3.4 11.6 + - - -
603E LEU* 2.7 11.7 + - - +
605E MET* 1.3 79.6 - - - +
607E LEU* 1.3 55.6 + - - +
609E GLN* 3.0 25.6 + - - +
610E LYS* 3.0 39.8 + - + +
607F LEU* 3.6 28.5 - - + +
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Residues in contact with LEU 607 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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603E LEU 3.0 14.4 + - - +
604E GLU* 4.1 11.2 - - + +
605E MET 3.2 0.2 - - - -
606E THR* 1.3 73.1 - - - +
608E GLU* 1.3 60.4 + - + +
609E GLN 3.0 2.5 - - - -
610E LYS* 3.6 2.8 - - + +
611E THR* 2.7 39.6 + - - +
603F LEU* 3.4 36.1 - - + +
606F THR* 4.0 23.3 - - + +
607F LEU* 3.4 40.2 - - + -
610F LYS* 4.6 11.9 - - + +
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Residues in contact with GLU 608 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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604E GLU 3.6 17.6 + - - +
605E MET* 3.4 9.3 + - - +
607E LEU* 1.3 79.9 - - + +
609E GLN* 1.3 56.5 + - - +
611E THR* 4.1 4.9 - - - -
612E LYS* 3.5 25.7 + - - +
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Residues in contact with GLN 609 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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389D GLN* 5.8 2.1 + - - -
605E MET* 3.6 13.3 + - - +
606E THR* 3.0 32.9 + - - +
608E GLU* 1.3 80.0 - - - +
610E LYS* 1.3 64.2 + - + +
611E THR 3.3 1.6 - - - -
612E LYS* 3.5 17.7 - - + +
613E GLU* 3.3 20.6 + - - +
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Residues in contact with LYS 610 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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378D HIS* 6.4 1.2 - - - -
606E THR* 3.0 28.2 + - + +
607E LEU* 3.1 5.8 + - - +
609E GLN* 1.3 78.6 - - + +
611E THR* 1.3 58.3 + - - +
613E GLU* 3.4 13.1 + - - +
614E ILE* 3.1 31.0 + - - +
607F LEU* 3.6 31.0 - - + +
610F LYS* 4.7 14.1 - - + +
611F THR* 3.3 41.5 + - - +
614F ILE* 3.8 11.7 - - + +
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Residues in contact with THR 611 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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607E LEU* 2.7 31.1 + - - +
608E GLU* 4.4 5.2 - - - -
610E LYS* 1.3 69.5 - - - +
612E LYS* 1.3 63.8 + - - +
614E ILE* 3.2 9.2 + - + +
615E ASP* 2.7 51.1 + - - +
610F LYS* 3.2 31.2 + - - +
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Residues in contact with LYS 612 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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392D LEU* 6.6 0.2 - - + -
608E GLU 3.5 18.5 + - - +
609E GLN* 3.5 18.4 - - + +
611E THR* 1.3 80.4 - - - +
613E GLU* 1.3 60.7 + - - +
615E ASP* 3.9 6.8 - - - +
616E GLU* 3.2 36.2 + - + +
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Residues in contact with GLU 613 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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375D PHE* 4.4 14.1 - - + -
376D VAL 5.5 0.4 - - - -
377D ASP* 3.3 10.9 - - - +
378D HIS* 2.8 52.7 + - - +
388D PRO* 6.4 0.2 - - - -
609E GLN 3.3 10.8 + - - +
610E LYS* 3.7 11.0 + - - +
611E THR 3.2 0.4 - - - -
612E LYS* 1.3 77.4 - - - +
614E ILE* 1.3 65.7 + - - +
616E GLU* 3.2 4.9 + - - +
617E LEU* 3.0 31.6 + - + +
614F ILE* 3.6 24.3 - - + +
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Residues in contact with ILE 614 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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610E LYS 3.1 21.8 + - - +
611E THR* 3.2 12.8 + - + +
613E GLU* 1.3 77.0 - - - +
615E ASP* 1.3 63.0 + - - +
617E LEU* 3.2 0.5 + - - -
618E THR* 2.7 46.3 + - - +
610F LYS* 3.8 17.0 - - + +
613F GLU* 3.7 47.6 - - + +
614F ILE* 3.5 26.0 - - + +
617F LEU* 3.8 9.5 - - + +
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Residues in contact with ASP 615 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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611E THR* 2.7 36.2 + - - +
612E LYS* 3.9 6.5 + - - +
614E ILE* 1.3 84.7 - - - +
616E GLU* 1.3 61.5 + - + +
618E THR* 3.6 5.4 + - - -
619E ARG* 3.2 21.7 + - - +
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Residues in contact with GLU 616 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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366D ARG* 2.9 41.5 + - - -
374D THR 4.2 4.9 - - - +
375D PHE* 3.3 35.8 - - + -
612E LYS* 3.2 26.2 + - + +
613E GLU 3.6 1.1 - - - +
615E ASP* 1.3 75.6 - - + +
617E LEU* 1.3 66.0 + - - +
619E ARG* 3.3 14.6 + - - +
620E ILE* 3.2 26.5 + - - +
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Residues in contact with LEU 617 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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364D ILE* 5.1 11.7 - - + -
375D PHE* 3.9 26.2 - - + -
377D ASP* 4.8 8.1 - - + +
613E GLU* 3.0 35.0 + - + +
616E GLU* 1.3 74.3 - - - +
618E THR* 1.3 60.9 + - - +
620E ILE* 3.3 9.4 + - + +
621E CYS* 2.9 34.0 + - - +
614F ILE* 4.4 25.6 - - + +
617F LEU* 3.5 22.7 - - + +
618F THR* 4.7 15.0 - - - +
621F CYS* 4.7 12.6 - - - -
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Residues in contact with THR 618 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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595C LYS* 3.8 20.4 - - - +
614E ILE* 2.7 32.9 + - - +
615E ASP* 3.9 7.4 - - - -
616E GLU 3.2 0.2 - - - -
617E LEU* 1.3 74.3 - - - +
619E ARG* 1.3 66.1 + - - +
621E CYS* 4.1 3.5 - - - +
622E ASP* 3.1 43.2 + - - +
617F LEU* 3.5 15.6 - - + +
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Residues in contact with ARG 619 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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366D ARG* 3.7 30.6 - - - +
455D GLU* 3.8 15.1 + - - +
456D TYR* 3.2 40.2 - - - +
615E ASP 3.2 11.4 + - - +
616E GLU* 3.4 16.6 + - - +
617E LEU 3.2 0.2 - - - -
618E THR* 1.3 81.1 - - - +
620E ILE* 1.3 64.4 + - - +
622E ASP* 3.2 5.6 + - - +
623E ASP* 3.0 33.7 + - - +
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Residues in contact with ILE 620 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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364D ILE* 4.8 12.6 - - + -
366D ARG* 4.1 17.9 - - + +
375D PHE* 3.7 35.0 - - + -
456D TYR* 4.0 17.5 - - + +
458D ILE* 3.9 27.3 - - + +
616E GLU 3.2 16.0 + - - +
617E LEU* 3.3 13.4 + - + +
619E ARG* 1.3 77.6 - - + +
621E CYS* 1.3 57.1 + - - +
623E ASP* 3.2 2.6 + - - +
624E LEU* 2.8 40.3 + - + +
621F CYS* 4.3 8.5 - - + -
625F ILE* 5.9 0.2 - - + -
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Residues in contact with CYS 621 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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595C LYS* 4.7 15.5 - - + -
617E LEU 2.9 16.3 + - - +
618E THR* 4.1 5.6 - - - +
619E ARG 3.3 0.2 - - - -
620E ILE* 1.3 73.4 - - - +
622E ASP* 1.3 62.2 + - - +
624E LEU* 3.8 4.9 - - - +
625E ILE* 2.9 39.2 + - + +
617F LEU* 3.6 21.5 - - + -
620F ILE* 4.6 8.7 - - + -
621F CYS* 2.0 53.4 - - - -
624F LEU* 4.4 1.3 - - + +
----------------------------------------------------------
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Residues in contact with ASP 622 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
595C LYS* 3.0 31.6 + - - +
618E THR* 3.1 30.1 + - - +
619E ARG* 3.6 6.0 - - - +
621E CYS* 1.3 76.0 - - - +
623E ASP* 1.3 61.8 + - - +
625E ILE* 3.5 9.0 + - - +
626E SER* 2.8 28.4 + - - -
----------------------------------------------------------
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Residues in contact with ASP 623 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
446D PHE* 3.3 47.7 - - + -
455D GLU* 4.7 2.1 - - - +
456D TYR* 2.7 33.1 + - - +
458D ILE* 5.9 0.9 - - + -
619E ARG* 3.0 28.8 + - - +
620E ILE 3.6 1.6 - - - +
622E ASP* 1.3 78.3 - - - +
624E LEU* 1.3 61.0 + - - +
626E SER* 3.9 3.9 - - - -
627E LYS* 2.9 25.8 + - - +
----------------------------------------------------------
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Residues in contact with LEU 624 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
444D PHE* 3.6 36.8 - - + -
446D PHE* 6.4 0.2 - - + -
458D ILE* 3.9 10.3 - - + -
620E ILE* 2.8 35.9 + - + +
621E CYS* 3.8 1.8 - - - +
623E ASP* 1.3 73.2 - - - +
625E ILE* 1.3 66.8 + - - +
627E LYS* 3.3 12.6 + - + +
628E MET* 3.0 24.1 + - - +
621F CYS* 4.1 22.4 - - + +
624F LEU* 3.6 18.2 - - + -
625F ILE* 3.7 28.5 - - + -
628F MET* 3.8 9.0 - - + +
----------------------------------------------------------
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Residues in contact with ILE 625 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
588C ALA* 3.6 13.8 - - + +
591C ALA* 4.1 12.8 - - + +
592C SER* 3.6 42.2 - - - +
595C LYS* 4.5 14.8 - - + -
621E CYS* 2.9 26.4 + - + +
622E ASP* 3.6 7.9 - - - +
624E LEU* 1.3 76.2 - - - +
626E SER* 1.3 65.6 + - - +
628E MET* 3.1 15.0 + - - +
629E GLU* 3.2 28.4 + - - +
620F ILE* 5.5 2.9 - - + -
624F LEU* 3.6 19.3 - - + -
----------------------------------------------------------
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Residues in contact with SER 626 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
446D PHE* 4.6 9.6 - - - -
449D PRO* 5.7 6.4 - - - +
622E ASP 2.8 19.9 + - - -
623E ASP* 3.5 13.5 - - - -
624E LEU 3.2 0.4 - - - -
625E ILE* 1.3 79.5 - - - +
627E LYS* 1.3 59.6 + - - +
629E GLU* 3.6 27.5 + - - +
630E LYS* 3.8 14.4 + - - +
----------------------------------------------------------
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Residues in contact with LYS 627 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
420D GLY* 2.8 32.0 + - - -
422D VAL* 5.7 1.2 - - - +
444D PHE* 3.4 31.1 - - + -
445D THR 3.7 7.0 + - - +
446D PHE* 4.3 20.6 - - + -
623E ASP 2.9 15.3 + - - +
624E LEU* 3.3 15.9 - - + +
626E SER* 1.3 74.6 - - - +
628E MET* 1.3 64.2 + - - +
629E GLU 3.2 0.4 - - - -
630E LYS* 3.6 8.6 + - - +
631E ILE* 2.9 57.4 + - + +
628F MET* 4.0 21.5 - - - -
----------------------------------------------------------
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Residues in contact with MET 628 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
584C PHE* 3.5 26.8 - - + +
587C LEU* 4.0 17.3 - - + -
588C ALA* 3.8 27.1 - - + -
624E LEU 3.0 17.7 + - - +
625E ILE* 3.1 5.8 + - - +
627E LYS* 1.3 76.2 - - - +
629E GLU* 1.3 68.3 + - - +
631E ILE* 3.2 18.4 - - - +
624F LEU* 3.8 35.2 - - + +
627F LYS* 4.3 15.5 - - + +
628F MET* 3.7 37.9 - - + -
631F ILE* 6.1 0.9 - - + -
----------------------------------------------------------
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Residues in contact with GLU 629 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
584C PHE* 4.7 4.3 - - - +
585C GLU* 5.1 20.3 + - + +
588C ALA* 3.9 17.3 - - + +
625E ILE* 3.2 28.8 + - - +
626E SER* 3.6 18.6 + - - +
627E LYS 3.2 0.2 - - - -
628E MET* 1.3 80.5 - - - +
630E LYS* 1.3 66.3 + - + +
631E ILE 4.1 1.9 - - - -
----------------------------------------------------------
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Residues in contact with LYS 630 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
447D GLN 5.9 0.2 + - - -
449D PRO* 3.7 36.0 + - - +
626E SER* 3.8 13.4 + - - +
627E LYS* 3.6 8.6 + - - +
629E GLU* 1.3 80.8 - - + +
631E ILE* 1.3 63.1 + - + +
----------------------------------------------------------
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Residues in contact with ILE 631 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
584C PHE* 3.0 50.3 - - + -
420D GLY* 4.7 12.8 - - - +
421D GLN* 6.1 0.9 - - + -
627E LYS* 2.9 50.4 + - + +
628E MET* 3.2 20.9 - - - +
629E GLU 4.1 0.4 - - - -
630E LYS* 1.3 84.1 - - + +
628F MET* 5.7 7.6 - - + -
631F ILE* 5.9 4.0 - - + -
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il