Contacts of the helix formed by residues 584 - 628 (chain F) in PDB entry 4PKY
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with PHE 584 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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628B MET* 3.9 31.9 - - + +
631B ILE* 3.5 36.0 + - + -
627C LYS 5.2 10.3 - - - -
628C MET* 6.2 3.1 - - + -
583F GLU* 1.3 91.0 - - + +
585F GLU* 1.3 55.1 + - - +
586F VAL* 3.0 11.1 + - - +
587F LEU* 3.1 36.0 + - + +
588F ALA* 3.5 7.6 + - - +
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Residues in contact with GLU 585 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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628B MET 5.2 1.6 - - - +
629B GLU* 3.8 34.1 - - + +
630B LYS 5.6 0.3 - - - +
631B ILE 5.3 1.5 - - - +
586E VAL* 5.5 2.3 - - + +
583F GLU 3.0 22.8 + - - +
584F PHE* 1.3 79.4 - - - +
586F VAL* 1.3 59.9 + - + +
587F LEU 3.3 0.6 + - - -
588F ALA* 3.9 10.3 + - - +
589F LEU* 3.8 26.9 + - - +
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Residues in contact with VAL 586 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
582E GLY* 4.7 10.5 - - - +
585E GLU* 5.5 7.9 - - + +
586E VAL* 4.1 26.7 - - + +
589E LEU* 3.8 20.6 - - + +
583F GLU 4.0 14.1 - - - +
584F PHE 3.0 0.8 - - - -
585F GLU* 1.3 81.5 - - + +
587F LEU* 1.3 63.6 + - + +
588F ALA 3.6 0.2 - - - -
589F LEU* 4.3 2.6 - - - +
590F GLN* 3.4 26.9 + - - +
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Residues in contact with LEU 587 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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628B MET* 3.3 21.4 - - + +
624C LEU* 5.0 2.4 - - + +
627C LYS* 4.2 39.7 - - + +
584F PHE* 3.1 29.3 + - + +
586F VAL* 1.3 84.2 - - + +
588F ALA* 1.3 65.2 + - - +
589F LEU 3.3 1.3 - - - -
590F GLN* 3.4 23.8 - - - +
591F ALA* 3.0 24.1 + - - +
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Residues in contact with ALA 588 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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625B ILE* 3.5 30.5 - - + +
628B MET* 3.1 20.4 - - + +
629B GLU* 4.6 16.6 - - + +
584F PHE 3.5 4.3 + - - +
585F GLU* 3.9 10.5 + - - +
586F VAL 3.6 0.2 - - - -
587F LEU* 1.3 76.0 - - - +
589F LEU* 1.3 59.1 + - + +
591F ALA* 3.0 4.2 + - - +
592F SER* 2.8 33.5 + - - -
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Residues in contact with LEU 589 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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586E VAL* 3.8 25.4 - - + +
589E LEU* 4.1 19.7 - - + +
590E GLN* 3.7 37.0 - - + +
593E LEU* 4.2 25.2 - - + +
585F GLU 3.8 16.0 + - - +
586F VAL* 4.3 4.0 - - - +
587F LEU 3.3 0.4 - - - -
588F ALA* 1.3 78.8 - - + +
590F GLN* 1.3 58.3 + - - +
592F SER* 3.2 5.1 + - - -
593F LEU* 2.8 34.5 + - - +
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Residues in contact with GLN 590 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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627C LYS* 6.1 0.9 - - - -
589E LEU* 4.4 24.2 - - + +
586F VAL* 3.4 19.5 + - - +
587F LEU* 3.3 30.7 + - + +
588F ALA 3.2 0.6 - - - -
589F LEU* 1.3 78.5 - - - +
591F ALA* 1.3 59.4 + - - +
593F LEU* 3.9 3.6 - - + +
594F ARG* 3.4 53.1 + - - +
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Residues in contact with ALA 591 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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625B ILE* 3.4 21.3 - - + -
620C ILE* 4.3 11.5 - - + +
624C LEU* 3.7 25.1 - - + -
587F LEU 3.0 16.8 + - - +
589F LEU 3.0 0.2 - - - -
590F GLN* 1.3 75.8 - - - +
592F SER* 1.3 66.6 + - - +
593F LEU 3.0 1.6 - - - -
594F ARG* 3.0 13.3 + - - +
595F LYS* 3.0 21.8 + - - +
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Residues in contact with SER 592 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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625B ILE* 3.5 26.2 - - - +
593E LEU* 3.7 23.2 - - - +
588F ALA 2.8 21.4 + - - -
589F LEU* 3.7 6.6 - - - +
591F ALA* 1.3 72.4 - - - +
593F LEU* 1.3 57.4 - - - +
595F LYS* 3.1 11.7 + - - +
596F ALA* 2.8 28.1 + - - +
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Residues in contact with LEU 593 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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589E LEU* 4.0 23.1 - - + +
592E SER* 3.4 49.8 - - - +
593E LEU* 3.4 17.9 - - + +
596E ALA* 4.6 3.1 - - + -
589F LEU 2.8 18.2 + - - +
590F GLN* 3.9 5.6 - - + +
592F SER* 1.3 74.4 - - - +
594F ARG* 1.3 68.9 + - + +
596F ALA* 2.9 2.8 + - - +
597F GLN* 2.8 51.1 + - + +
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Residues in contact with ARG 594 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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616C GLU* 4.8 11.1 - - - +
620C ILE* 3.9 23.5 - - + +
623C ASP* 4.3 20.2 + - - +
627C LYS* 5.8 4.2 - - - +
590F GLN* 3.4 43.9 + - - +
591F ALA* 3.0 12.2 + - - +
593F LEU* 1.3 78.7 - - + +
595F LYS* 1.3 57.6 + - - +
597F GLN* 3.9 13.6 - - - +
598F MET* 3.0 28.4 + - - +
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Residues in contact with LYS 595 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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618B THR* 3.6 27.8 - - - +
621B CYS* 4.0 20.6 - - - -
622B ASP* 3.3 28.6 + - - +
625B ILE* 5.8 2.0 - - + -
617C LEU* 4.6 7.6 - - + -
620C ILE* 3.9 13.0 - - + +
591F ALA 3.0 11.4 + - - +
592F SER* 3.3 13.5 - - - +
593F LEU 3.0 0.2 - - - -
594F ARG* 1.3 78.9 - - - +
596F ALA* 1.3 61.6 + - - +
598F MET* 3.5 17.3 - - + +
599F GLN* 3.1 46.4 + - - +
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Residues in contact with ALA 596 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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593E LEU* 4.1 13.5 - - + -
596E ALA* 3.8 21.1 - - + -
597E GLN* 4.6 10.3 - - + +
600E ASN* 3.5 18.2 + - - +
592F SER 2.8 13.4 + - - +
593F LEU 3.5 6.1 - - - +
595F LYS* 1.3 79.6 - - - +
597F GLN* 1.3 60.7 + - - +
599F GLN* 3.4 19.2 + - - +
600F ASN* 3.4 8.7 + - - -
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Residues in contact with GLN 597 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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592E SER* 5.7 1.6 - - - -
595E LYS* 6.0 3.8 - - - +
596E ALA* 4.5 8.5 - - + -
593F LEU* 2.8 46.9 + - + +
594F ARG* 4.0 14.9 - - - +
596F ALA* 1.3 75.8 - - - +
598F MET* 1.3 65.6 + - - +
600F ASN* 3.3 20.4 + - - +
601F HIS* 3.4 12.5 + - - +
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Residues in contact with MET 598 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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618B THR* 5.8 0.9 - - - +
609C GLN* 5.5 0.5 + - - -
613C GLU* 3.5 56.1 - - + +
616C GLU* 4.0 27.1 - - + -
617C LEU* 4.0 25.4 - - + -
620C ILE* 5.3 0.4 - - - -
594F ARG 3.0 19.7 + - - +
595F LYS* 3.5 23.1 - - + +
597F GLN* 1.3 78.2 - - - +
599F GLN* 1.3 73.2 + - + +
601F HIS* 3.4 8.5 + - - +
602F SER* 3.1 19.4 + - - -
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Residues in contact with GLN 599 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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613C GLU* 4.7 5.4 - - - +
600E ASN* 3.4 19.3 + - - +
604E GLU* 6.0 0.2 + - - -
595F LYS* 3.1 45.7 + - - +
596F ALA* 3.4 9.4 + - - +
597F GLN 3.3 0.6 - - - -
598F MET* 1.3 88.3 - - + +
600F ASN* 1.3 60.1 + - - +
602F SER* 3.1 8.0 + - - -
603F LEU* 2.7 37.4 + - + +
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Residues in contact with ASN 600 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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596E ALA* 3.8 10.9 + - - +
599E GLN* 3.6 25.9 + - - +
600E ASN* 2.7 47.2 + - - +
603E LEU* 3.8 12.7 - - + +
596F ALA 3.4 5.5 + - - -
597F GLN* 3.3 14.2 + - - +
598F MET 3.2 0.6 - - - -
599F GLN* 1.3 74.7 - - - +
601F HIS* 1.3 57.0 + - - +
603F LEU* 3.8 2.4 - - - +
604F GLU* 2.6 43.3 + - + +
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Residues in contact with HIS 601 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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609C GLN* 4.0 15.9 + - - +
612C LYS* 4.4 23.5 + - + +
597F GLN 3.4 9.3 + - - +
598F MET* 3.7 9.6 - - - +
599F GLN 3.3 0.2 - - - -
600F ASN* 1.3 78.8 - - - +
602F SER* 1.3 61.5 + - - +
604F GLU* 4.6 7.2 - - + +
605F MET* 3.0 67.6 + - + +
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Residues in contact with SER 602 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
609C GLN* 3.9 23.1 + - - +
613C GLU* 3.4 31.9 + - - +
598F MET* 3.1 14.4 + - - +
599F GLN* 3.4 11.7 - - - -
600F ASN 3.0 0.6 - - - -
601F HIS* 1.3 77.0 - - - +
603F LEU* 1.3 59.9 + - - +
605F MET* 3.2 2.8 + - - +
606F THR* 2.8 35.5 + - - -
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Residues in contact with LEU 603 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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600E ASN* 3.3 52.7 - - + +
603E LEU* 3.9 17.3 - - + -
604E GLU* 4.2 16.2 - - + +
607E LEU* 3.4 30.2 - - + +
599F GLN* 2.7 21.7 + - + +
600F ASN 3.8 2.0 - - - +
602F SER* 1.3 76.2 - - - +
604F GLU* 1.3 57.1 + - - +
606F THR* 3.4 5.4 + - - -
607F LEU* 2.8 31.6 + - - +
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Residues in contact with GLU 604 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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603E LEU* 4.1 18.6 - - + +
600F ASN* 2.6 26.0 + - - +
601F HIS* 4.3 7.3 - - + +
603F LEU* 1.3 72.5 - - - +
605F MET* 1.3 67.9 + - + +
607F LEU* 3.8 9.1 - - + +
608F GLU* 3.5 26.3 + - - +
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Residues in contact with MET 605 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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609C GLN* 3.5 28.9 - - + +
612C LYS* 6.3 0.4 - - - -
601F HIS* 3.0 49.6 + - + +
602F SER 3.7 2.0 - - - +
603F LEU 3.1 0.2 - - - -
604F GLU* 1.3 84.7 - - + +
606F THR* 1.3 63.3 + - - +
607F LEU 3.1 1.3 - - - -
608F GLU* 3.3 35.8 - - - +
609F GLN* 3.1 25.1 + - - +
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Residues in contact with THR 606 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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606C THR* 6.0 2.3 - - - +
609C GLN* 4.9 6.7 - - - +
607E LEU* 4.0 20.9 - - + -
602F SER* 2.8 22.3 + - - -
603F LEU* 3.7 8.3 - - + -
605F MET* 1.3 77.5 - - - +
607F LEU* 1.3 57.0 + - - +
609F GLN* 3.8 5.6 - - - +
610F LYS* 3.0 49.0 + - + +
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Residues in contact with LEU 607 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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603E LEU* 3.7 27.8 - - + +
606E THR* 3.6 35.9 - - + +
607E LEU* 3.4 25.6 - - + +
610E LYS* 3.6 20.6 - - + +
603F LEU 2.8 18.9 + - - +
604F GLU* 3.8 9.2 - - + +
605F MET 3.1 0.2 - - - -
606F THR* 1.3 77.7 - - - +
608F GLU* 1.3 58.3 + - - +
610F LYS* 3.3 4.3 + - - +
611F THR* 2.8 30.9 + - - +
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Residues in contact with GLU 608 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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605C MET* 5.7 4.2 - - - +
604F GLU* 3.5 14.0 + - - +
605F MET* 3.3 41.8 - - - +
607F LEU* 1.3 77.7 - - - +
609F GLN* 1.3 70.2 + - - +
611F THR* 3.5 10.0 + - - -
612F LYS* 3.2 39.4 + - - +
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Residues in contact with GLN 609 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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601C HIS* 3.5 31.3 + - - -
602C SER* 4.0 24.1 - - - +
605C MET* 3.2 44.3 - - + +
606C THR* 5.0 5.6 - - - +
605F MET 3.1 18.0 + - - +
606F THR* 3.8 7.0 - - - +
608F GLU* 1.3 81.4 - - - +
610F LYS* 1.3 58.3 + - + +
611F THR 3.1 0.7 - - - -
612F LYS* 3.1 25.5 + - - +
613F GLU* 3.1 26.3 + - - +
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Residues in contact with LYS 610 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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607E LEU* 4.6 10.9 - - + +
610E LYS* 4.7 10.8 - - + +
611E THR* 3.2 48.0 + - - +
614E ILE* 3.8 13.0 - - + +
606F THR* 3.0 36.1 + - + +
607F LEU* 3.3 6.7 + - - +
609F GLN* 1.3 77.9 - - + +
611F THR* 1.3 58.4 + - - +
613F GLU* 3.8 20.3 - - - +
614F ILE* 3.2 27.7 + - - +
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Residues in contact with THR 611 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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610E LYS* 3.3 29.1 - - - +
607F LEU* 2.8 21.8 + - - +
608F GLU* 3.7 10.4 - - - -
609F GLN 3.1 0.4 - - - -
610F LYS* 1.3 76.7 - - - +
612F LYS* 1.3 65.1 + - - +
613F GLU 3.1 1.3 - - - -
614F ILE* 3.2 9.0 + - + +
615F ASP* 3.2 34.7 + - - +
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Residues in contact with LYS 612 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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601C HIS* 4.6 15.7 + - + +
605C MET* 4.8 8.9 - - - +
608F GLU* 3.2 25.7 + - - +
609F GLN* 3.1 34.9 + - - +
611F THR* 1.3 78.4 - - - +
613F GLU* 1.3 63.2 + - - +
615F ASP* 3.4 6.1 + - - +
616F GLU* 3.0 25.9 + - - +
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Residues in contact with GLU 613 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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598C MET* 3.5 34.7 - - + +
599C GLN* 4.5 5.9 - - - +
602C SER* 3.7 30.3 + - - -
614E ILE* 3.7 32.2 - - + +
609F GLN* 3.1 13.3 + - - +
610F LYS* 3.8 16.4 - - - +
611F THR 3.1 0.2 - - - -
612F LYS* 1.3 77.4 - - - +
614F ILE* 1.3 55.7 + - - +
616F GLU* 3.8 4.7 - - - +
617F LEU* 2.9 36.4 + - + +
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Residues in contact with ILE 614 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
378D HIS* 3.4 34.5 - - + +
610E LYS* 3.8 15.5 - - + +
613E GLU* 3.6 39.7 - - + +
614E ILE* 3.5 24.9 - - + +
617E LEU* 4.4 9.7 - - + +
610F LYS 3.2 16.8 + - - +
611F THR* 3.2 12.9 + - + +
613F GLU* 1.3 78.9 - - - +
615F ASP* 1.3 60.5 + - - +
617F LEU* 3.4 4.0 + - - +
618F THR* 3.0 29.1 + - - -
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Residues in contact with ASP 615 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
378D HIS* 4.2 18.4 + - - -
611F THR* 3.2 27.8 + - - +
612F LYS* 4.0 5.5 - - - +
614F ILE* 1.3 80.2 - - - +
616F GLU* 1.3 58.3 + - - +
618F THR* 3.2 15.4 - - + +
619F ARG* 3.1 41.0 + - - +
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Residues in contact with GLU 616 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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594C ARG* 4.9 9.9 - - - +
598C MET* 3.6 30.9 - - + +
612F LYS 3.0 17.4 + - - +
613F GLU 4.0 2.2 - - - +
615F ASP* 1.3 75.3 - - - +
617F LEU* 1.3 61.3 + - - +
618F THR 3.3 0.4 - - - -
619F ARG* 3.0 37.2 + - - +
620F ILE* 3.3 34.8 + - + +
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Residues in contact with LEU 617 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
595C LYS* 4.6 15.0 - - + -
598C MET* 3.8 27.4 - - + -
614E ILE* 3.8 16.6 - - + +
617E LEU* 3.5 31.2 - - + +
618E THR* 3.5 26.5 - - - +
621E CYS* 3.6 22.8 - - + -
613F GLU* 2.9 18.8 + - + +
614F ILE 4.0 3.4 - - - +
616F GLU* 1.3 75.5 - - - +
618F THR* 1.3 61.7 + - - +
619F ARG 3.4 0.2 - - - -
620F ILE* 3.8 11.5 + - + +
621F CYS* 3.5 16.8 + - - -
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Residues in contact with THR 618 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
364D ILE* 4.9 2.1 - - - +
377D ASP* 4.7 4.0 + - - -
378D HIS* 5.8 3.6 - - + -
379D ARG* 3.2 42.2 + - - +
617E LEU* 4.7 13.4 - - - +
614F ILE* 3.0 19.9 + - + +
615F ASP* 3.2 24.7 - - + +
617F LEU* 1.3 77.7 - - - +
619F ARG* 1.3 66.3 + - + +
620F ILE 3.3 0.2 - - - -
621F CYS* 4.0 4.5 - - - +
622F ASP* 2.8 33.2 + - - +
----------------------------------------------------------
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Residues in contact with ARG 619 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
615F ASP* 3.1 33.4 + - - +
616F GLU* 3.0 34.6 + - - +
618F THR* 1.3 81.4 - - + +
620F ILE* 1.3 66.2 + - + +
622F ASP* 3.1 8.0 - - - +
623F ASP* 2.9 35.0 - - - +
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Residues in contact with ILE 620 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
591C ALA* 4.6 23.3 - - + +
594C ARG* 4.3 14.8 - - + +
595C LYS* 4.0 35.4 - - + +
598C MET* 4.8 3.6 - - - -
621E CYS* 4.6 11.9 - - + -
625E ILE* 5.5 2.9 - - + -
616F GLU* 3.3 28.4 + - - +
617F LEU* 4.0 17.5 - - + +
618F THR 3.3 0.6 - - - -
619F ARG* 1.3 77.6 - - + +
621F CYS* 1.3 59.2 + - - +
623F ASP* 3.2 5.3 + - - +
624F LEU* 2.8 39.7 + - + +
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Residues in contact with CYS 621 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
364D ILE* 4.0 18.2 - - + -
617E LEU* 4.2 11.7 - - + -
620E ILE* 4.3 7.2 - - - -
621E CYS* 2.0 56.1 - - - -
624E LEU* 4.1 12.7 - - + +
617F LEU 3.5 10.4 + - - +
618F THR* 3.6 3.3 + - - +
619F ARG 3.4 0.2 - - - -
620F ILE* 1.3 78.5 - - - +
622F ASP* 1.3 59.1 + - - +
624F LEU* 2.9 8.5 + - - +
625F ILE* 2.8 32.8 + - - +
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Residues in contact with ASP 622 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
362D ARG* 4.1 27.1 + - - +
364D ILE* 4.3 11.7 - - + -
379D ARG* 2.6 31.9 + - - -
460D THR* 5.1 2.5 - - + -
618F THR 2.8 19.0 - - - +
619F ARG* 3.1 10.6 - - - +
621F CYS* 1.3 77.9 - - - +
623F ASP* 1.3 73.4 + - - +
625F ILE* 4.0 10.8 - - - +
626F SER* 3.0 26.7 + - - -
----------------------------------------------------------
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Residues in contact with ASP 623 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
619F ARG* 2.9 29.8 - - - +
620F ILE* 3.2 4.4 + - - +
621F CYS 3.1 0.6 - - - -
622F ASP* 1.3 85.8 + - - +
624F LEU* 1.3 62.9 + - - +
626F SER* 3.6 8.6 - - - -
627F LYS* 3.4 35.4 + - - +
----------------------------------------------------------
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Residues in contact with LEU 624 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
587C LEU* 4.8 3.4 - - + +
591C ALA* 3.8 24.7 - - + -
621E CYS* 4.4 2.9 - - - +
624E LEU* 3.6 31.6 - - + -
625E ILE* 3.6 27.6 - - + +
628E MET* 3.8 30.6 - - + +
620F ILE* 2.8 22.6 + - + +
621F CYS* 3.3 5.8 - - - +
623F ASP* 1.3 77.6 - - - +
625F ILE* 1.3 64.1 + - - +
627F LYS* 3.4 16.5 + - + +
628F MET* 3.4 21.2 + - + +
----------------------------------------------------------
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Residues in contact with ILE 625 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
364D ILE* 4.3 20.4 - - + -
442D SER* 4.8 2.0 - - - +
444D PHE* 4.1 18.4 - - + -
458D ILE* 4.3 17.5 - - + -
460D THR* 3.7 28.0 - - + +
624E LEU* 3.7 29.6 - - + -
621F CYS 2.8 18.6 + - - +
622F ASP* 4.0 7.6 - - - +
624F LEU* 1.3 73.9 - - - +
626F SER* 1.3 67.3 + - - +
628F MET* 3.2 17.3 + - + +
629F GLU* 3.2 30.3 + - + +
----------------------------------------------------------
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Residues in contact with SER 626 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
622F ASP 3.0 21.2 + - - -
623F ASP* 3.6 13.5 - - - -
625F ILE* 1.3 79.2 - - - +
627F LYS* 1.3 62.3 + - - +
628F MET 3.5 0.2 + - - -
629F GLU* 3.5 17.6 - - - +
630F LYS* 3.5 38.3 + - - +
----------------------------------------------------------
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Residues in contact with LYS 627 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
587C LEU* 4.4 36.0 - - + +
628E MET* 4.3 11.4 - - + +
623F ASP* 3.4 21.9 + - - +
624F LEU* 3.4 11.1 + - + +
625F ILE 3.2 0.4 - - - -
626F SER* 1.3 82.8 - - - +
628F MET* 1.3 59.3 + - - +
629F GLU 3.4 0.6 + - - -
630F LYS* 4.1 16.3 + - + +
631F ILE* 3.7 22.0 - - - +
----------------------------------------------------------
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Residues in contact with MET 628 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
584C PHE* 6.0 2.2 - - + -
422D VAL* 4.1 12.7 - - + +
444D PHE* 5.0 11.7 - - + -
624E LEU* 3.8 18.2 - - + +
627E LYS* 4.0 30.3 - - + -
628E MET* 3.7 44.0 - - + -
631E ILE* 5.7 8.5 - - + -
624F LEU* 3.4 21.0 + - + +
625F ILE* 3.2 16.3 + - + +
627F LYS* 1.3 78.8 - - - +
629F GLU* 1.3 59.0 + - + +
630F LYS 3.5 0.4 - - - -
631F ILE* 4.1 19.1 + - + +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il