Contacts of the helix formed by residues 584 - 629 (chain C) in PDB entry 4PKY
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with PHE 584 (chain C).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
583C GLU* 1.3 88.0 - - + +
585C GLU* 1.3 59.9 + - - +
586C VAL 3.1 2.0 + - - -
587C LEU* 3.2 6.3 + - + +
588C ALA* 3.0 31.5 + - - +
628E MET* 3.5 33.7 - - + +
629E GLU 4.7 2.5 - - - +
631E ILE* 3.0 36.8 - - + +
628F MET* 6.0 2.9 - - + -
631F ILE* 3.3 48.2 - - + -
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Residues in contact with GLU 585 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
586B VAL* 4.2 29.1 - - + +
590B GLN* 5.3 4.2 + - - +
583C GLU 3.5 2.7 - - - +
584C PHE* 1.3 79.2 - - - +
586C VAL* 1.3 57.1 + - - +
588C ALA* 4.4 5.0 - - - +
589C LEU* 3.1 27.0 + - + +
629E GLU* 5.1 19.6 + - + +
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Residues in contact with VAL 586 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
585B GLU* 3.9 22.7 - - + +
586B VAL* 5.2 12.2 - - + +
589B LEU* 3.6 22.2 - - + -
583C GLU* 3.1 29.3 - - + +
585C GLU* 1.3 79.4 - - - +
587C LEU* 1.3 64.2 + - + +
589C LEU* 3.1 6.7 + - - +
590C GLN* 2.7 45.9 + - - +
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Residues in contact with LEU 587 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
583C GLU* 3.2 22.4 - - + +
584C PHE* 3.2 7.0 + - + +
586C VAL* 1.3 84.2 - - + +
588C ALA* 1.3 58.7 + - - +
589C LEU 3.1 0.2 + - - -
590C GLN* 3.1 21.4 + - + +
591C ALA* 2.8 30.5 + - - +
628E MET* 4.0 20.6 - - + -
624F LEU* 4.8 1.9 - - + +
627F LYS* 4.4 38.8 - - + +
631F ILE* 6.2 4.3 - - + -
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Residues in contact with ALA 588 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
584C PHE 3.0 16.2 + - - +
585C GLU 4.4 3.4 - - - +
587C LEU* 1.3 77.4 - - - +
589C LEU* 1.3 60.7 + - - +
591C ALA* 3.6 5.8 + - - +
592C SER* 3.2 24.8 + - - -
625E ILE* 3.6 18.5 - - + +
628E MET* 3.8 18.8 - - + -
629E GLU* 3.9 30.0 - - + +
624F LEU* 5.0 1.1 - - - -
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Residues in contact with LEU 589 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
586B VAL* 3.6 30.7 - - + +
589B LEU* 3.3 37.9 - - + +
590B GLN* 3.7 18.2 - - + +
593B LEU* 4.0 25.2 - - + +
585C GLU* 3.1 19.1 + - + +
586C VAL* 3.1 6.3 + - - +
587C LEU 3.0 0.6 - - - -
588C ALA* 1.3 77.1 - - - +
590C GLN* 1.3 65.1 + - - +
591C ALA 3.1 1.3 - - - -
592C SER* 3.1 7.7 + - - +
593C LEU* 3.0 21.5 + - - +
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Residues in contact with GLN 590 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
585B GLU* 5.9 0.7 - - - -
589B LEU* 3.8 17.5 - - + -
586C VAL* 2.7 38.0 + - - +
587C LEU* 3.6 24.5 - - + +
589C LEU* 1.3 72.5 - - - +
591C ALA* 1.3 59.8 + - - +
593C LEU* 3.4 11.7 + - + +
594C ARG* 3.1 49.8 + - - +
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Residues in contact with ALA 591 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
587C LEU 2.8 16.0 + - - +
588C ALA 3.7 6.7 - - - +
589C LEU 3.1 0.2 - - - -
590C GLN* 1.3 75.5 - - - +
592C SER* 1.3 65.9 + - - +
593C LEU 3.3 0.2 + - - -
594C ARG* 3.3 8.2 + - - +
595C LYS* 3.1 22.7 + - - +
625E ILE* 4.1 14.7 - - + +
620F ILE* 4.6 13.0 - - + +
624F LEU* 3.8 26.5 - - + -
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Residues in contact with SER 592 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
593B LEU* 3.8 26.5 - - - +
597B GLN* 5.8 1.6 - - - -
588C ALA 3.2 12.4 + - - -
589C LEU* 3.1 12.5 + - - +
591C ALA* 1.3 78.8 - - - +
593C LEU* 1.3 58.1 + - - +
595C LYS* 3.2 5.9 + - - +
596C ALA* 2.9 28.8 + - - +
625E ILE* 3.6 24.6 - - - +
629E GLU* 4.9 2.3 + - - -
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Residues in contact with LEU 593 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
589B LEU* 4.9 13.5 - - + +
592B SER* 3.5 38.8 - - - +
593B LEU* 3.6 22.2 - - + +
596B ALA* 4.4 7.9 - - + -
589C LEU 3.0 12.4 + - - +
590C GLN* 3.5 15.3 - - + +
591C ALA 3.1 0.2 - - - -
592C SER* 1.3 76.9 - - - +
594C ARG* 1.3 59.3 + - + +
596C ALA* 3.1 3.3 + - - +
597C GLN* 2.8 55.1 + - - +
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Residues in contact with ARG 594 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
590C GLN* 3.1 38.2 + - - +
591C ALA* 3.3 6.9 + - - +
593C LEU* 1.3 75.5 - - + +
595C LYS* 1.3 57.2 + - - +
597C GLN* 3.8 18.1 - - - +
598C MET* 3.0 26.3 + - - +
616F GLU* 4.9 8.7 - - - +
620F ILE* 4.3 16.5 - - + +
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Residues in contact with LYS 595 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
591C ALA 3.1 13.2 + - - +
592C SER* 3.4 10.1 - - - +
593C LEU 3.1 0.2 - - - -
594C ARG* 1.3 76.9 - - - +
596C ALA* 1.3 55.5 + - - +
598C MET* 3.2 15.2 + - + +
599C GLN* 2.8 49.9 + - - +
618E THR* 3.8 24.9 - - - +
621E CYS* 4.7 10.1 - - + -
622E ASP* 3.0 33.4 + - - +
625E ILE* 4.5 14.6 - - + -
617F LEU* 4.6 11.9 - - + -
620F ILE* 4.0 13.9 - - + +
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Residues in contact with ALA 596 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
593B LEU* 4.3 11.2 - - + -
596B ALA* 3.9 24.0 - - + -
597B GLN* 4.5 9.6 - - + +
600B ASN* 3.2 20.5 + - - +
592C SER 2.9 13.3 + - - +
593C LEU 3.6 6.7 - - - +
595C LYS* 1.3 72.9 - - - +
597C GLN* 1.3 61.1 + - - +
599C GLN* 3.2 7.9 + - - +
600C ASN* 2.8 26.1 + - - +
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Residues in contact with GLN 597 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
596B ALA* 5.3 6.1 - - + -
593C LEU* 2.8 46.1 + - + +
594C ARG* 3.8 21.2 - - - +
596C ALA* 1.3 75.6 - - - +
598C MET* 1.3 62.6 + - - +
600C ASN* 3.1 8.3 + - - +
601C HIS* 3.1 22.5 + - - +
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Residues in contact with MET 598 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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594C ARG 3.0 19.9 + - - +
595C LYS* 3.4 15.3 - - + +
597C GLN* 1.3 78.8 - - - +
599C GLN* 1.3 78.0 + - + +
600C ASN 3.2 0.5 + - - -
601C HIS* 3.4 7.0 + - - +
602C SER* 3.2 20.4 + - - -
618E THR* 6.1 0.2 - - - +
613F GLU* 3.5 46.7 - - + +
616F GLU* 3.6 31.6 - - + +
617F LEU* 3.8 33.7 - - + -
620F ILE* 4.8 2.9 - - + -
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Residues in contact with GLN 599 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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600B ASN* 4.3 16.6 + - - +
604B GLU* 5.5 7.3 + - - -
702B SO4 5.0 10.7 + - - -
595C LYS* 2.8 37.2 + - - +
596C ALA* 3.6 10.4 - - - +
598C MET* 1.3 84.3 - - + +
600C ASN* 1.3 60.8 + - - +
602C SER* 3.5 7.0 - - - -
603C LEU* 3.3 34.9 + - + +
613F GLU* 4.5 5.6 - - - +
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Residues in contact with ASN 600 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
596B ALA* 5.0 1.9 + - + +
599B GLN* 4.3 20.8 + - - +
600B ASN* 2.8 28.1 + - - +
603B LEU* 3.4 17.7 - - - +
596C ALA 2.8 10.0 + - - +
597C GLN* 3.3 12.6 - - - +
598C MET 3.0 0.2 - - - -
599C GLN* 1.3 74.9 - - - +
601C HIS* 1.3 68.0 + - - +
602C SER 3.1 1.6 - - - -
603C LEU* 3.0 5.8 + - - +
604C GLU* 2.9 39.9 + - - +
256G TYR* 5.6 1.4 + - - -
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Residues in contact with HIS 601 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
597C GLN 3.1 8.6 + - - +
598C MET* 3.4 8.9 + - - +
600C ASN* 1.3 81.8 + - - +
602C SER* 1.3 61.9 + - - +
604C GLU* 3.3 8.9 + - - +
605C MET* 3.0 53.6 + - + +
609F GLN* 3.5 26.9 + - - -
612F LYS* 4.6 17.0 + - + +
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Residues in contact with SER 602 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
598C MET 3.2 10.3 + - - -
599C GLN* 3.5 12.3 - - - -
601C HIS* 1.3 79.8 - - - +
603C LEU* 1.3 64.0 + - - +
605C MET* 3.3 2.8 + - - +
606C THR* 2.9 37.1 + - - -
609F GLN* 4.0 20.2 - - - +
613F GLU* 3.7 30.6 + - - -
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Residues in contact with LEU 603 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
600B ASN* 3.4 37.9 - - + +
603B LEU* 3.8 22.8 - - + +
604B GLU* 3.9 23.1 - - + +
607B LEU* 4.8 15.6 - - + +
599C GLN* 3.3 25.8 + - + +
600C ASN 3.0 8.3 + - - +
602C SER* 1.3 85.4 - - - +
604C GLU* 1.3 58.7 + - - +
606C THR* 3.7 7.4 - - - +
607C LEU* 2.9 31.5 + - - +
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Residues in contact with GLU 604 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
603B LEU* 3.6 25.9 - - + +
600C ASN* 2.9 28.6 + - - +
601C HIS* 3.9 10.1 + - - +
603C LEU* 1.3 75.6 - - - +
605C MET* 1.3 64.4 + - + +
607C LEU* 3.8 8.3 - - + +
608C GLU* 3.3 22.2 + - - +
256G TYR* 3.4 35.0 + - - -
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Residues in contact with MET 605 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
601C HIS* 3.0 36.8 + - + +
602C SER 3.7 0.7 - - - +
604C GLU* 1.3 76.5 - - + +
606C THR* 1.3 65.8 + - - +
607C LEU 3.0 1.3 - - - -
608C GLU* 3.0 23.9 + - - +
609C GLN* 3.0 23.4 + - - +
608F GLU* 5.7 4.5 - - - +
609F GLN* 3.2 42.6 - - + +
612F LYS* 4.8 11.9 - - - +
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Residues in contact with THR 606 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
607B LEU* 3.9 24.7 - - + -
602C SER* 2.9 24.5 + - - -
603C LEU* 3.7 9.6 - - - +
605C MET* 1.3 75.7 - - - +
607C LEU* 1.3 60.8 + - - +
609C GLN* 3.6 7.5 + - + +
610C LYS* 3.2 32.5 + - + +
606F THR* 6.0 1.8 - - - +
609F GLN* 5.0 5.5 - - - +
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Residues in contact with LEU 607 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
603B LEU* 4.0 26.0 - - + +
606B THR* 4.1 15.7 - - + -
607B LEU* 3.6 37.4 - - + +
610B LYS* 3.9 26.7 - - + +
603C LEU 2.9 17.8 + - - +
604C GLU* 3.8 8.1 - - + +
606C THR* 1.3 76.2 - - - +
608C GLU* 1.3 66.2 + - - +
610C LYS* 3.0 4.7 + - - +
611C THR* 2.9 26.0 + - - +
259G ASP* 3.3 28.9 - - + +
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Residues in contact with GLU 608 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
604C GLU 3.3 10.4 + - - +
605C MET* 3.0 29.6 + - - +
607C LEU* 1.3 79.3 - - - +
609C GLN* 1.3 62.5 + - - +
611C THR* 3.3 9.1 + - - -
612C LYS* 3.3 40.6 + - - +
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Residues in contact with GLN 609 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
605C MET 3.0 14.9 + - - +
606C THR* 3.9 8.1 - - - +
607C LEU 3.1 0.2 - - - -
608C GLU* 1.3 78.2 - - - +
610C LYS* 1.3 62.5 + - + +
612C LYS* 3.4 24.6 + - - +
613C GLU* 3.3 20.5 + - - +
598F MET 5.5 0.4 + - - -
601F HIS* 3.7 33.0 + - - +
602F SER* 3.9 24.4 + - - +
605F MET* 3.5 33.6 - - + +
606F THR* 4.9 6.1 - - - +
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Residues in contact with LYS 610 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
607B LEU* 3.8 27.4 - - + +
610B LYS* 4.3 14.1 - - + +
611B THR* 3.2 43.2 + - - +
614B ILE* 3.7 13.0 - - + +
606C THR* 3.2 24.3 + - + +
607C LEU* 3.0 6.6 + - - +
609C GLN* 1.3 76.0 - - + +
611C THR* 1.3 64.3 + - - +
613C GLU* 3.5 19.9 + - - +
614C ILE* 3.2 26.6 + - - +
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Residues in contact with THR 611 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
610B LYS* 2.9 30.1 + - - +
607C LEU* 2.9 12.8 + - - +
608C GLU* 3.6 12.1 - - - -
609C GLN 3.2 0.4 - - - -
610C LYS* 1.3 77.1 - - - +
612C LYS* 1.3 64.4 + - - +
614C ILE* 3.2 17.0 + - + +
615C ASP* 3.1 33.2 + - - +
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Residues in contact with LYS 612 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
608C GLU* 3.3 33.6 + - + +
609C GLN* 3.7 30.6 + - - +
610C LYS 3.4 0.2 - - - -
611C THR* 1.3 76.8 - - - +
613C GLU* 1.3 62.9 + - - +
615C ASP* 3.3 9.3 + - - +
616C GLU* 3.1 24.6 + - - +
601F HIS* 4.4 20.3 + - + +
605F MET* 6.3 0.4 - - - -
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Residues in contact with GLU 613 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
614B ILE* 3.7 29.1 - - + +
609C GLN* 3.3 10.0 + - - +
610C LYS* 3.7 25.5 + - - +
611C THR 3.2 0.4 - - - -
612C LYS* 1.3 76.3 - - - +
614C ILE* 1.3 65.2 + - - +
616C GLU* 4.5 0.9 - - - -
617C LEU* 3.3 22.7 + - + +
598F MET* 3.5 40.2 - - + +
599F GLN* 4.7 7.1 - - - +
602F SER* 3.4 23.4 + - - +
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Residues in contact with ILE 614 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
378A HIS* 3.5 33.9 - - + +
610B LYS* 3.8 14.8 - - + +
613B GLU* 3.7 35.4 - - + +
614B ILE* 3.3 27.4 - - + +
617B LEU* 4.4 7.7 - - + +
610C LYS 3.2 17.1 + - - +
611C THR* 3.2 12.0 + - + +
612C LYS 3.1 0.2 - - - -
613C GLU* 1.3 76.5 - - - +
615C ASP* 1.3 61.6 + - - +
616C GLU 3.0 1.4 + - - -
617C LEU* 3.0 7.0 + - - +
618C THR* 2.9 33.9 + - - +
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Residues in contact with ASP 615 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
378A HIS* 4.3 11.3 + - - -
611C THR* 3.1 29.8 + - - +
612C LYS* 3.3 8.8 + - - +
614C ILE* 1.3 85.4 - - - +
616C GLU* 1.3 57.6 + - - +
618C THR* 3.4 9.9 - - - -
619C ARG* 3.2 41.4 + - - +
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Residues in contact with GLU 616 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
612C LYS 3.1 15.3 + - - +
613C GLU 3.9 4.7 - - - +
614C ILE 3.0 0.6 - - - -
615C ASP* 1.3 74.8 - - - +
617C LEU* 1.3 60.1 + - - +
618C THR 3.1 1.3 - - - -
619C ARG* 3.0 28.1 + - - +
620C ILE* 2.9 45.3 + - + +
594F ARG* 4.8 12.2 - - - +
598F MET* 4.0 30.7 - - + -
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Residues in contact with LEU 617 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
614B ILE* 3.8 26.9 - - + +
617B LEU* 3.9 21.7 - - + +
618B THR* 3.5 26.2 - - - +
621B CYS* 4.5 26.0 - - + -
613C GLU* 3.3 14.7 + - + +
614C ILE 3.0 7.2 + - - +
616C GLU* 1.3 75.1 - - - +
618C THR* 1.3 64.5 + - - +
620C ILE* 3.9 7.2 - - + -
621C CYS* 3.1 30.5 + - - -
595F LYS* 4.6 10.1 - - + -
598F MET* 4.0 26.2 - - + -
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Residues in contact with THR 618 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
364A ILE* 5.6 1.3 - - + -
377A ASP* 5.0 3.1 + - - +
378A HIS* 4.8 4.9 - - - -
379A ARG* 3.1 52.2 + - - +
617B LEU* 4.5 9.7 - - - +
614C ILE* 2.9 26.1 + - - +
615C ASP* 3.4 13.2 - - - -
617C LEU* 1.3 77.4 - - - +
619C ARG* 1.3 65.4 + - + +
621C CYS* 3.9 2.8 - - - +
622C ASP* 3.0 30.3 + - - +
----------------------------------------------------------
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Residues in contact with ARG 619 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
615C ASP* 3.2 23.1 + - - +
616C GLU* 3.0 29.7 + - - +
618C THR* 1.3 82.1 - - + +
620C ILE* 1.3 62.5 + - + +
622C ASP* 3.6 5.5 + - - +
623C ASP* 3.1 35.1 + - - +
----------------------------------------------------------
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Residues in contact with ILE 620 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
621B CYS* 3.9 22.0 - - - -
616C GLU* 2.9 37.4 + - + +
617C LEU* 4.1 12.8 - - + +
619C ARG* 1.3 74.7 - - - +
621C CYS* 1.3 67.9 + - - +
623C ASP* 3.3 5.0 + - - +
624C LEU* 3.2 36.1 + - + +
591F ALA* 4.3 13.9 - - + +
594F ARG* 3.9 23.1 - - + +
595F LYS* 3.9 35.4 - - + +
598F MET* 5.3 0.4 - - - -
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Residues in contact with CYS 621 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
364A ILE* 3.8 20.2 - - + -
617B LEU* 4.0 15.9 - - - -
620B ILE* 4.6 9.4 - - + -
621B CYS* 3.6 38.1 - - - -
624B LEU* 3.9 10.7 - - + +
617C LEU* 3.1 23.9 + - - +
618C THR* 3.9 1.6 - - - +
620C ILE* 1.3 79.0 - - - +
622C ASP* 1.3 62.8 + - - +
624C LEU* 3.2 5.2 + - - +
625C ILE* 3.1 28.5 + - - +
----------------------------------------------------------
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Residues in contact with ASP 622 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
362A ARG* 3.7 29.7 + - - +
364A ILE* 3.6 13.2 - - - +
379A ARG* 2.8 43.2 + - - -
460A THR* 4.4 4.0 - - - +
618C THR* 3.0 22.4 + - - +
619C ARG* 4.0 5.6 - - - +
621C CYS* 1.3 76.4 - - - +
623C ASP* 1.3 58.2 + - - +
625C ILE* 3.4 5.3 + - - +
626C SER* 2.8 33.3 + - - -
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Residues in contact with ASP 623 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
619C ARG* 3.1 24.4 + - - +
620C ILE* 3.3 5.7 + - - +
622C ASP* 1.3 79.1 - - - +
624C LEU* 1.3 68.1 + - + +
626C SER* 3.6 8.2 + - - -
627C LYS* 3.3 42.9 + - - +
594F ARG* 4.3 18.7 + - - +
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Residues in contact with LEU 624 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
621B CYS* 4.7 2.9 - - - +
624B LEU* 3.8 35.9 - - + +
625B ILE* 3.8 28.7 - - + -
628B MET* 4.3 22.2 - - + +
620C ILE* 3.2 22.3 + - + +
621C CYS* 3.6 8.1 - - - +
622C ASP 3.2 0.6 - - - -
623C ASP* 1.3 80.8 - - + +
625C ILE* 1.3 64.9 + - - +
627C LYS* 3.2 7.1 + - + +
628C MET* 3.1 30.7 + - + +
587F LEU* 5.0 2.0 - - + +
591F ALA* 3.7 22.2 - - + -
----------------------------------------------------------
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Residues in contact with ILE 625 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
364A ILE* 4.2 21.5 - - + -
422A VAL* 6.6 0.4 - - + -
442A SER* 4.5 8.5 - - - +
444A PHE* 4.3 21.1 - - + -
458A ILE* 4.5 15.7 - - + -
460A THR* 3.4 33.2 - - + +
620B ILE* 6.0 0.9 - - + -
624B LEU* 3.6 21.3 - - + -
621C CYS 3.1 17.4 + - - +
622C ASP* 3.8 6.5 - - - +
624C LEU* 1.3 74.7 - - - +
626C SER* 1.3 64.6 + - - +
628C MET* 3.0 20.5 + - + +
629C GLU* 3.6 14.6 + - - +
----------------------------------------------------------
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Residues in contact with SER 626 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
362A ARG* 5.3 9.0 - - - -
622C ASP 2.8 20.0 + - - -
623C ASP* 3.6 13.7 + - - -
625C ILE* 1.3 76.3 - - - +
627C LYS* 1.3 61.8 + - - +
629C GLU* 3.2 31.4 + - - +
----------------------------------------------------------
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Residues in contact with LYS 627 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
628B MET* 5.5 4.7 - - - -
623C ASP* 3.3 30.5 + - + +
624C LEU* 3.2 7.9 + - + +
625C ILE 3.0 0.4 - - - -
626C SER* 1.3 81.0 - - - +
628C MET* 1.3 59.8 + - - +
629C GLU 3.2 10.4 + - - +
584F PHE* 5.2 11.3 - - - -
587F LEU* 4.2 39.6 - - + +
590F GLN* 6.1 1.0 - - - -
594F ARG* 5.8 4.6 - - - +
----------------------------------------------------------
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Residues in contact with MET 628 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
420A GLY 5.5 2.0 - - - +
422A VAL* 3.9 21.5 - - + +
444A PHE* 5.2 11.4 - - + -
624B LEU* 4.6 19.3 - - - +
627B LYS* 3.7 35.2 - - + -
628B MET* 4.3 30.5 - - + +
631B ILE* 3.7 27.4 - - + -
624C LEU* 3.1 19.9 + - - +
625C ILE* 3.0 12.0 + - + +
627C LYS* 1.3 78.4 - - - +
629C GLU* 1.3 61.7 + - - +
584F PHE* 6.2 3.4 - - + -
----------------------------------------------------------
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Residues in contact with GLU 629 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
422A VAL* 4.7 18.6 - - + -
442A SER* 4.6 16.3 + - - -
625C ILE* 3.6 8.4 + - - +
626C SER* 3.2 33.6 + - - +
627C LYS 3.2 5.1 - - - +
628C MET* 1.3 82.2 - - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il