Contacts of the helix formed by residues 584 - 631 (chain B) in PDB entry 4PKY
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with PHE 584 (chain B).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
583B GLU* 1.3 80.6 - - + +
585B GLU* 1.3 64.1 + - - +
586B VAL 3.4 0.2 - - - -
587B LEU* 3.6 16.7 + - + +
588B ALA* 3.6 18.8 + - + +
327G TYR* 5.9 14.6 - + + -
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Residues in contact with GLU 585 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
583B GLU 3.4 5.4 - - - +
584B PHE* 1.3 80.0 - - - +
586B VAL* 1.3 65.9 + - + +
588B ALA* 3.1 15.3 + - + +
589B LEU* 3.2 27.3 - - + +
586C VAL* 3.9 23.2 - - + +
590C GLN* 5.9 1.0 - - - -
328G ASN 5.8 0.7 - - - +
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Residues in contact with VAL 586 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
583B GLU* 3.9 23.8 - - - +
585B GLU* 1.3 77.6 - - + +
587B LEU* 1.3 59.9 + - + +
588B ALA 3.1 0.2 + - - -
589B LEU* 3.2 4.0 + - - -
590B GLN* 2.8 45.2 + - - +
585C GLU* 4.2 33.0 - - + +
586C VAL* 5.2 14.4 - - + -
589C LEU* 3.6 20.4 - - + +
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Residues in contact with LEU 587 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
583B GLU 3.8 14.0 + - - +
584B PHE* 3.6 22.2 + - + +
586B VAL* 1.3 80.1 - - + +
588B ALA* 1.3 59.3 + - - +
590B GLN* 3.7 22.1 - - + +
591B ALA* 3.2 21.8 + - - +
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Residues in contact with ALA 588 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
584B PHE* 3.6 13.2 + - + +
585B GLU* 3.1 12.9 + - + +
586B VAL 3.1 0.8 - - - -
587B LEU* 1.3 77.9 - - - +
589B LEU* 1.3 62.6 + - + +
591B ALA* 3.4 6.1 + - - +
592B SER* 3.1 29.9 + - - -
327G TYR* 3.9 26.9 - - + +
328G ASN 4.0 17.3 - - - +
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Residues in contact with LEU 589 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
585B GLU* 3.2 28.3 - - + +
586B VAL* 3.2 3.0 + - - +
588B ALA* 1.3 73.7 - - - +
590B GLN* 1.3 62.0 + - - +
591B ALA 3.1 1.6 - - - -
592B SER* 3.6 6.3 - - - +
593B LEU* 2.8 32.6 + - - +
586C VAL* 3.6 31.9 - - + +
589C LEU* 3.3 27.7 - - + +
590C GLN* 3.8 23.1 - - + +
593C LEU* 4.9 12.9 - - + +
328G ASN 4.2 16.2 - - - +
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Residues in contact with GLN 590 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
586B VAL* 2.8 34.3 + - - +
587B LEU* 3.7 26.0 - - + +
589B LEU* 1.3 76.8 - - - +
591B ALA* 1.3 60.4 + - - +
593B LEU* 3.8 5.0 - - + +
594B ARG* 3.4 32.1 + - - +
585C GLU* 5.5 3.7 + - - -
589C LEU* 3.7 19.6 - - + +
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Residues in contact with ALA 591 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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587B LEU 3.2 15.6 + - - +
588B ALA* 3.6 7.4 - - - +
589B LEU 3.1 0.4 - - - -
590B GLN* 1.3 78.5 - - - +
592B SER* 1.3 63.3 + - - +
594B ARG* 3.5 5.3 + - - +
595B LYS* 3.2 22.5 + - - +
326G ILE* 5.0 18.4 - - + +
327G TYR* 5.7 2.0 - - + +
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Residues in contact with SER 592 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
588B ALA 3.1 18.0 + - - -
589B LEU* 3.7 7.6 - - - -
591B ALA* 1.3 73.5 - - - +
593B LEU* 1.3 67.0 + - - +
595B LYS* 3.6 17.9 + - - +
596B ALA* 3.2 14.9 + - - +
593C LEU* 3.5 24.1 - - - +
326G ILE* 3.9 17.9 - - - +
327G TYR 4.1 4.2 + - - -
328G ASN* 5.0 3.3 - - - -
335G GLN* 4.9 3.3 + - - -
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Residues in contact with LEU 593 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
589B LEU 2.8 16.8 + - - +
590B GLN* 3.8 7.0 - - + +
592B SER* 1.3 74.7 - - - +
594B ARG* 1.3 69.3 + - - +
596B ALA* 2.8 25.1 + - - +
597B GLN* 2.8 38.5 + - - +
589C LEU* 4.0 22.9 - - + +
592C SER* 3.8 41.7 - - - +
593C LEU* 3.6 16.3 - - + +
596C ALA* 4.3 6.5 - - + -
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Residues in contact with ARG 594 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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590B GLN* 3.4 20.8 + - + +
591B ALA* 4.1 4.9 - - - +
593B LEU* 1.3 88.1 - - + +
595B LYS* 1.3 56.6 + - - +
597B GLN* 2.9 30.1 + - - +
598B MET* 2.8 28.8 + - - +
701B SO4 3.1 43.7 + - - -
702B SO4 5.0 2.6 + - - -
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Residues in contact with LYS 595 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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591B ALA 3.2 17.1 + - - +
592B SER* 3.7 14.9 + - - +
593B LEU 2.9 0.8 + - - -
594B ARG* 1.3 74.7 - - - +
596B ALA* 1.3 67.8 + - - +
598B MET* 3.1 15.4 + - + +
599B GLN* 3.0 32.3 + - - +
247G GLU* 3.6 19.3 + - - +
326G ILE* 4.1 31.7 - - + +
335G GLN* 4.4 6.5 + - - +
336G CYS* 4.0 15.9 - - - -
338G MET* 4.1 30.1 - - + -
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Residues in contact with ALA 596 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
592B SER 3.2 10.8 + - - +
593B LEU* 2.8 11.9 + - - +
595B LYS* 1.3 81.4 - - - +
597B GLN* 1.3 62.8 + - - +
599B GLN* 3.0 15.4 + - - +
600B ASN* 3.0 28.8 + - - +
593C LEU* 4.4 7.0 - - + -
596C ALA* 3.9 25.6 - - + -
597C GLN* 5.1 6.1 - - + +
600C ASN* 5.0 2.0 + - + +
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Residues in contact with GLN 597 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
593B LEU* 2.8 42.0 + - + +
594B ARG* 2.9 42.8 + - - +
596B ALA* 1.3 75.6 - - - +
598B MET* 1.3 60.6 + - - +
600B ASN* 3.9 9.5 - - - +
601B HIS* 3.0 33.9 + - + -
701B SO4 5.2 1.6 + - - -
702B SO4 3.8 37.1 + - - +
592C SER* 5.8 1.4 - - - -
596C ALA* 4.5 10.8 - - + +
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Residues in contact with MET 598 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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594B ARG 2.8 17.2 + - - +
595B LYS* 3.4 16.2 - - + +
596B ALA 3.1 0.2 - - - -
597B GLN* 1.3 76.4 - - - +
599B GLN* 1.3 59.4 + - - +
601B HIS* 3.3 8.6 + - - +
602B SER* 2.9 25.1 + - - -
239G LEU* 4.8 15.5 - - + +
245G LEU* 4.0 14.1 - - + -
338G MET* 3.6 42.2 - - + -
340G VAL* 4.5 16.4 - - + -
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Residues in contact with GLN 599 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
595B LYS* 3.0 25.3 + - - +
596B ALA* 3.0 12.9 + - - +
598B MET* 1.3 75.5 - - + +
600B ASN* 1.3 60.3 + - - +
602B SER* 3.0 9.9 + - - -
603B LEU* 2.7 33.2 + - + +
600C ASN* 4.3 17.0 + - - +
245G LEU* 4.1 7.2 - - + -
247G GLU* 3.9 14.3 + - - -
256G TYR* 4.1 28.4 - - + +
258G ASP* 6.0 0.4 - - - +
338G MET* 3.5 39.0 - - + +
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Residues in contact with ASN 600 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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596B ALA 3.0 20.0 + - - +
597B GLN* 3.9 8.4 - - - +
599B GLN* 1.3 76.1 - - - +
601B HIS* 1.3 64.8 + - + +
603B LEU* 2.9 14.6 + - - +
604B GLU* 2.9 14.7 + - - +
596C ALA* 3.2 34.4 + - - +
599C GLN* 4.3 18.9 + - - +
600C ASN* 2.8 42.4 + - - +
603C LEU* 3.4 16.4 - - + +
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Residues in contact with HIS 601 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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597B GLN* 3.0 25.2 + - + +
598B MET* 3.7 7.2 - - - +
600B ASN* 1.3 81.2 - - + +
602B SER* 1.3 57.1 + - - +
604B GLU* 3.1 27.9 + - - +
605B MET* 3.1 32.5 + - + +
702B SO4 2.9 40.1 + - - -
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Residues in contact with SER 602 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
598B MET 2.9 14.0 + - - -
599B GLN 3.0 8.9 + - - -
601B HIS* 1.3 76.4 - - - +
603B LEU* 1.3 63.7 + - - +
605B MET* 3.3 9.6 + - - +
606B THR* 3.3 7.1 + - - -
239G LEU* 4.7 6.5 - - - +
245G LEU* 3.7 20.1 - - - +
258G ASP* 3.1 22.8 + - - -
260G ARG* 2.6 40.8 + - - +
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Residues in contact with LEU 603 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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599B GLN* 2.7 13.6 + - + +
600B ASN* 2.9 8.5 + - - +
602B SER* 1.3 74.5 - - - +
604B GLU* 1.3 59.9 + - - +
605B MET 3.0 4.8 + - - -
606B THR* 3.1 8.8 + - - +
607B LEU* 2.9 26.3 + - - +
600C ASN* 3.4 29.6 - - - +
603C LEU* 3.8 23.8 - - + +
604C GLU* 3.6 33.2 - - + +
607C LEU* 4.0 28.3 - - + +
256G TYR* 4.7 11.0 - - - +
258G ASP* 5.2 7.2 - - - +
259G ASP* 5.6 0.9 - - - +
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Residues in contact with GLU 604 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
600B ASN* 2.9 19.1 + - - +
601B HIS* 3.1 37.7 + - + +
603B LEU* 1.3 75.4 - - - +
605B MET* 1.3 60.8 + - - +
607B LEU* 3.6 17.9 - - + +
608B GLU* 3.0 27.5 + - - +
599C GLN* 5.5 5.5 + - - -
603C LEU* 3.9 18.4 - - + +
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Residues in contact with MET 605 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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601B HIS* 3.1 18.6 + - - +
602B SER* 3.3 11.9 - - - +
603B LEU 3.0 0.6 - - - -
604B GLU* 1.3 75.1 - - - +
606B THR* 1.3 66.7 + - - +
608B GLU* 2.8 18.0 + - - +
609B GLN* 3.1 14.3 + - - +
239G LEU* 4.5 18.4 - - + +
240G ASP* 3.4 37.2 - - - +
241G SER* 4.6 2.7 - - - +
260G ARG* 3.3 21.5 - - - +
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Residues in contact with THR 606 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
602B SER 3.3 6.6 + - - -
603B LEU* 3.1 11.2 + - - +
605B MET* 1.3 76.6 - - - +
607B LEU* 1.3 57.2 + - - +
609B GLN* 3.0 26.4 - - - +
610B LYS* 2.8 45.8 + - - +
607C LEU* 4.1 22.9 - - + -
258G ASP* 5.5 2.1 + - - +
259G ASP* 5.2 8.0 + - + -
260G ARG* 3.3 30.1 + - + +
263G GLU* 4.5 7.6 - - - +
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Residues in contact with LEU 607 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
603B LEU 2.9 16.3 + - - +
604B GLU* 3.6 18.2 - - + +
606B THR* 1.3 77.9 - - - +
608B GLU* 1.3 52.8 + - - +
610B LYS* 3.6 2.8 - - - +
611B THR* 2.6 39.1 + - - +
603C LEU* 4.8 15.0 - - + +
606C THR* 3.9 20.4 - - + -
607C LEU* 3.6 38.0 - - + +
610C LYS* 3.8 26.7 - - + -
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Residues in contact with GLU 608 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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604B GLU 3.0 14.2 + - - +
605B MET* 2.8 17.4 + - - +
607B LEU* 1.3 73.4 - - - +
609B GLN* 1.3 60.2 + - - +
611B THR* 3.5 8.4 + - - -
612B LYS* 3.4 39.1 + - - +
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Residues in contact with GLN 609 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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389A GLN* 3.9 21.1 + - - +
605B MET 3.1 7.3 + - - +
606B THR* 3.0 34.9 + - - +
608B GLU* 1.3 75.9 - - - +
610B LYS* 1.3 63.5 + - + +
611B THR 3.2 0.7 - - - -
612B LYS* 3.6 22.3 + - + +
613B GLU* 3.5 19.8 + - - +
241G SER* 4.4 16.5 + - - +
260G ARG* 5.1 5.7 - - - +
263G GLU* 3.6 30.9 + - - -
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Residues in contact with LYS 610 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
606B THR* 2.8 31.7 + - - +
607B LEU* 3.6 6.1 - - - +
609B GLN* 1.3 79.7 - - + +
611B THR* 1.3 59.7 + - - +
613B GLU* 4.0 9.2 - - - +
614B ILE* 3.3 22.5 + - - +
607C LEU* 3.9 26.8 - - + +
610C LYS* 4.3 18.3 - - + +
611C THR* 2.9 37.7 + - - +
614C ILE* 3.8 18.5 - - + +
259G ASP* 5.2 8.1 + - - +
263G GLU* 5.4 5.5 + - - -
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Residues in contact with THR 611 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
607B LEU* 2.6 23.5 + - - +
608B GLU* 3.5 10.0 + - - -
609B GLN 3.2 0.2 - - - -
610B LYS* 1.3 76.8 - - - +
612B LYS* 1.3 66.1 + - - +
613B GLU 3.1 1.1 - - - -
614B ILE* 3.2 7.3 + - + +
615B ASP* 3.0 39.1 + - - +
610C LYS* 3.2 31.9 - - - +
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Residues in contact with LYS 612 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
608B GLU* 3.4 32.6 + - - +
609B GLN* 3.7 18.7 - - + +
610B LYS 3.5 0.2 - - - -
611B THR* 1.3 78.9 - - - +
613B GLU* 1.3 62.7 + - - +
615B ASP* 3.1 9.6 + - - +
616B GLU* 3.0 25.8 + - - +
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Residues in contact with GLU 613 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
375A PHE* 4.5 17.0 - - + -
376A VAL 5.5 0.7 - - - -
377A ASP* 3.3 9.0 - - - +
378A HIS* 2.7 56.7 + - - +
388A PRO* 6.3 0.7 - - - -
609B GLN 3.5 11.8 + - - +
610B LYS* 4.0 9.4 - - - +
611B THR 3.1 0.6 - - - -
612B LYS* 1.3 80.8 - - - +
614B ILE* 1.3 62.7 + - - +
616B GLU* 3.5 1.2 + - - +
617B LEU* 3.1 36.8 + - + +
614C ILE* 3.7 23.8 - - + +
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Residues in contact with ILE 614 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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610B LYS 3.3 17.5 + - - +
611B THR* 3.2 11.6 + - + +
613B GLU* 1.3 76.7 - - - +
615B ASP* 1.3 68.4 - - - +
617B LEU* 3.2 2.9 + - - +
618B THR* 2.8 37.1 + - - +
610C LYS* 3.7 19.3 - - + +
613C GLU* 3.7 36.1 - - + +
614C ILE* 3.3 41.1 - - + +
617C LEU* 3.8 8.1 - - + +
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Residues in contact with ASP 615 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
611B THR* 3.0 32.5 + - - +
612B LYS* 3.6 8.6 - - - +
614B ILE* 1.3 82.8 - - - +
616B GLU* 1.3 62.9 + - - +
618B THR* 3.4 7.3 + - - -
619B ARG* 3.2 21.1 + - - +
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Residues in contact with GLU 616 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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366A ARG* 2.8 40.0 + - - -
374A THR 5.6 0.7 - - - -
375A PHE* 3.3 43.3 - - + -
612B LYS 3.0 16.7 + - - +
613B GLU 4.0 0.2 - - - +
615B ASP* 1.3 77.9 - - - +
617B LEU* 1.3 63.2 + - - +
619B ARG* 3.5 22.4 + - - +
620B ILE* 3.2 28.0 + - + +
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Residues in contact with LEU 617 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
364A ILE* 5.0 11.4 - - + -
375A PHE* 3.8 26.9 - - + -
377A ASP* 4.6 9.6 - - + -
613B GLU* 3.1 36.8 + - + +
614B ILE 3.7 3.8 - - - +
616B GLU* 1.3 73.8 - - - +
618B THR* 1.3 57.0 + - - +
619B ARG 3.2 0.2 - - - -
620B ILE* 3.3 8.0 + - + +
621B CYS* 2.7 37.1 + - - +
614C ILE* 4.4 17.0 - - + +
617C LEU* 3.9 28.7 - - + +
618C THR* 4.5 9.9 - - - +
621C CYS* 4.0 14.4 - - - -
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Residues in contact with THR 618 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
614B ILE* 2.8 27.5 + - - +
615B ASP* 3.6 8.5 - - - -
617B LEU* 1.3 76.7 - - - +
619B ARG* 1.3 53.6 + - - +
621B CYS* 3.5 5.7 - - - +
622B ASP* 2.7 55.3 + - - +
617C LEU* 3.5 16.4 - - - +
595F LYS* 3.6 23.8 - - - +
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Residues in contact with ARG 619 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
366A ARG* 3.3 40.6 - - - +
455A GLU* 3.6 23.8 + - - +
456A TYR* 3.6 17.5 - - - +
615B ASP 3.2 10.1 + - - +
616B GLU* 3.5 25.0 + - - +
617B LEU 3.2 0.4 - - - -
618B THR* 1.3 80.0 - - - +
620B ILE* 1.3 65.4 + - + +
622B ASP* 3.4 5.4 + - - +
623B ASP* 3.0 38.9 + - - +
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Residues in contact with ILE 620 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
364A ILE* 4.7 15.7 - - + -
366A ARG* 4.1 24.2 - - + -
375A PHE* 3.4 40.8 - - + -
456A TYR* 4.2 11.2 - - + +
458A ILE* 3.7 26.0 - - + -
616B GLU* 3.2 14.0 + - - +
617B LEU* 3.7 11.0 - - + +
619B ARG* 1.3 77.6 - - + +
621B CYS* 1.3 62.9 + - - +
623B ASP* 3.1 2.9 + - - +
624B LEU* 3.0 32.7 + - + +
621C CYS* 4.6 9.0 - - + -
625C ILE* 6.0 0.4 - - + -
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Residues in contact with CYS 621 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
617B LEU 2.7 21.9 + - - +
618B THR* 3.5 8.1 - - - +
620B ILE* 1.3 74.4 - - - +
622B ASP* 1.3 63.1 + - - +
624B LEU* 3.0 16.2 + - - +
625B ILE* 3.0 21.1 + - - +
617C LEU* 4.5 9.4 - - + -
620C ILE* 3.9 28.7 - - - -
621C CYS* 3.6 18.3 - - - -
624C LEU* 5.3 2.2 - - - -
595F LYS* 4.0 24.0 - - - -
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Residues in contact with ASP 622 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
618B THR* 2.7 38.0 + - - +
619B ARG* 3.8 5.8 - - - +
621B CYS* 1.3 73.4 - - - +
623B ASP* 1.3 62.6 + - - +
625B ILE* 3.7 10.2 + - - +
626B SER* 3.1 25.5 + - - -
595F LYS* 3.3 29.1 + - - +
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Residues in contact with ASP 623 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
446A PHE* 3.0 50.5 - - + -
455A GLU* 5.0 1.8 - - - +
456A TYR* 2.8 31.2 + - - +
619B ARG* 3.0 31.3 + - - +
620B ILE 3.5 3.4 - - - +
621B CYS 3.0 0.8 - - - -
622B ASP* 1.3 82.8 - - - +
624B LEU* 1.3 61.8 + - + +
626B SER* 3.8 4.4 - - - -
627B LYS* 3.1 15.2 + - - +
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Residues in contact with LEU 624 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
444A PHE* 4.2 14.6 - - + -
446A PHE* 5.7 1.3 - - + -
458A ILE* 3.7 28.0 - - + -
620B ILE* 3.0 21.1 + - + +
621B CYS 3.0 8.8 + - - +
623B ASP* 1.3 81.4 - - + +
625B ILE* 1.3 64.9 + - - +
627B LYS* 4.0 5.2 - - + +
628B MET* 3.0 27.4 + - - +
621C CYS* 3.9 22.9 - - + +
624C LEU* 3.8 22.0 - - + +
625C ILE* 3.6 33.9 - - + -
628C MET* 4.6 9.0 - - - +
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Residues in contact with ILE 625 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
621B CYS* 3.0 24.5 + - - +
622B ASP* 3.7 12.3 - - - +
624B LEU* 1.3 76.5 - - - +
626B SER* 1.3 57.6 + - - +
628B MET* 3.2 3.7 + - - +
629B GLU* 2.9 40.9 + - - +
624C LEU* 3.8 10.8 - - + -
588F ALA* 3.5 26.1 - - + +
591F ALA* 3.4 33.9 - - + -
592F SER* 3.5 25.6 - - - +
595F LYS* 5.8 1.3 - - + -
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Residues in contact with SER 626 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
446A PHE* 4.7 9.2 - - - -
622B ASP 3.1 16.1 + - - -
623B ASP* 3.9 10.3 - - - -
624B LEU 3.3 0.2 - - - -
625B ILE* 1.3 82.9 - - - +
627B LYS* 1.3 59.5 + - - +
629B GLU* 3.7 10.6 + - - +
630B LYS* 3.6 32.3 + - - +
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Residues in contact with LYS 627 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
420A GLY* 3.8 30.5 - - - -
444A PHE* 3.9 19.3 - - + -
445A THR 3.1 26.4 + - - +
446A PHE* 3.9 22.0 - - + +
447A GLN* 4.0 13.7 - - - +
623B ASP 3.1 20.2 + - - +
624B LEU* 4.0 6.3 - - + +
625B ILE 3.2 0.2 - - - -
626B SER* 1.3 74.7 - - - +
628B MET* 1.3 64.5 + - - +
629B GLU 3.2 0.8 + - - -
630B LYS* 3.5 18.1 + - + +
631B ILE* 3.5 20.4 + - + +
628C MET* 3.7 24.2 - - + -
----------------------------------------------------------
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Residues in contact with MET 628 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
624B LEU 3.0 18.7 + - - +
625B ILE 3.9 1.6 - - - +
627B LYS* 1.3 76.6 - - - +
629B GLU* 1.3 61.0 + - - +
630B LYS 3.4 0.2 - - - -
631B ILE* 3.4 24.2 + - + +
624C LEU* 4.3 29.6 - - + +
627C LYS* 5.5 4.0 - - - -
628C MET* 4.3 26.9 - - + -
584F PHE* 3.9 30.5 - - + +
587F LEU* 3.3 26.5 - - + +
588F ALA* 3.1 39.3 - - + +
----------------------------------------------------------
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Residues in contact with GLU 629 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
625B ILE* 2.9 28.8 + - - +
626B SER* 3.8 11.1 - - - +
627B LYS 3.2 0.4 - - - -
628B MET* 1.3 76.0 - - - +
630B LYS* 1.3 64.9 + - + +
631B ILE 3.1 2.6 + - - -
585F GLU* 3.8 33.7 - - + +
588F ALA* 4.6 13.7 - - + +
----------------------------------------------------------
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Residues in contact with LYS 630 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
446A PHE* 5.9 1.4 - - - -
447A GLN* 3.9 24.5 + - - +
448A ASN 3.4 25.9 + - - -
452A ASP* 5.2 0.8 + - - -
626B SER* 3.6 24.8 + - - +
627B LYS* 3.5 13.2 + - + +
628B MET 3.4 0.2 - - - -
629B GLU* 1.3 77.6 - - + +
631B ILE* 1.3 63.8 + - + +
585F GLU* 5.6 0.3 - - - +
----------------------------------------------------------
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Residues in contact with ILE 631 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
420A GLY 6.5 0.7 - - - -
627B LYS* 3.5 21.3 - - + +
628B MET* 3.4 19.9 + - + +
629B GLU 3.1 5.5 - - - -
630B LYS* 1.3 84.1 - - + +
628C MET* 3.7 27.6 - - + -
583F GLU* 3.4 36.5 + - - +
584F PHE* 3.5 43.1 - - + -
585F GLU* 5.3 1.3 - - - -
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il