Contacts of the helix formed by residues 553 - 604 (chain G) in PDB entry 4Q9U
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with THR 553 (chain G).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
552G GLU* 1.3 78.4 - - - +
554G ARG* 1.3 63.5 + - - +
556G GLN* 4.0 8.5 - - - +
557G VAL* 2.9 48.2 + - + +
553H THR* 3.4 31.1 + - - +
556H GLN* 4.7 4.9 - - + -
557H VAL* 4.9 4.4 - - + +
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Residues in contact with ARG 554 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
552G GLU* 3.2 28.3 - - - +
553G THR* 1.3 85.6 - - - +
555G ASP* 1.3 63.3 + - + +
557G VAL* 4.7 1.8 - - - -
558G LYS* 4.5 11.7 + - - +
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Residues in contact with ASP 555 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
552G GLU* 3.0 24.7 + - - +
554G ARG* 1.3 83.1 - - + +
556G GLN* 1.3 70.4 + - - +
558G LYS* 3.7 18.1 + - - +
559G LYS* 3.8 8.0 + - - +
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Residues in contact with GLN 556 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
552G GLU* 2.9 46.3 + - - +
553G THR* 3.3 9.6 + - - +
555G ASP* 1.3 81.3 - - - +
557G VAL* 1.3 57.6 + - - +
559G LYS* 2.9 25.6 + - - +
560G LEU* 3.0 21.7 + - + +
557H VAL* 4.1 29.2 - - + -
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Residues in contact with VAL 557 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
553G THR* 2.9 31.0 + - + +
554G ARG* 5.5 1.8 - - - -
556G GLN* 1.3 70.6 - - - +
558G LYS* 1.3 65.3 + - - +
560G LEU* 3.9 7.2 - - + +
561G GLN* 3.0 43.1 + - + +
556H GLN* 3.7 24.7 - - + +
557H VAL* 3.6 25.8 - - + -
560H LEU* 6.2 0.9 - - + -
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Residues in contact with LYS 558 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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554G ARG 4.5 10.6 + - - +
555G ASP* 3.7 12.0 + - - +
556G GLN 3.2 0.6 - - - -
557G VAL* 1.3 78.3 - - - +
559G LYS* 1.3 69.6 + - + +
561G GLN* 3.3 3.4 + - - +
562G LEU* 3.0 41.9 + - + +
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Residues in contact with LYS 559 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
555G ASP* 3.8 7.1 + - - +
556G GLN* 2.9 14.3 + - - +
558G LYS* 1.3 81.3 - - + +
560G LEU* 1.3 61.9 + - + +
562G LEU* 3.0 26.5 - - + +
563G MET* 3.0 16.3 + - + +
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Residues in contact with LEU 560 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
556G GLN* 3.0 23.4 + - + +
557G VAL* 4.3 7.6 - - + +
558G LYS 3.3 0.2 - - - -
559G LYS* 1.3 75.5 - - + +
561G GLN* 1.3 63.3 + - - +
562G LEU 2.9 5.5 + - - -
563G MET* 3.3 4.9 + - + +
564G LEU* 3.0 25.3 + - - +
557H VAL* 3.9 15.3 - - + +
560H LEU* 3.4 31.1 - - + +
561H GLN* 3.2 58.8 - - + +
564H LEU* 5.0 10.0 - - + +
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Residues in contact with GLN 561 (chain G).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
557G VAL* 3.0 34.2 + - + +
558G LYS* 3.9 4.0 - - - +
560G LEU* 1.3 76.2 - - - +
562G LEU* 1.3 56.1 + - - +
564G LEU* 4.3 5.6 - - + +
565G ARG* 2.8 80.8 + - + +
560H LEU* 4.8 9.1 - - + +
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Residues in contact with LEU 562 (chain G).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
558G LYS* 3.0 40.9 + - + +
559G LYS* 3.0 17.5 - - + +
560G LEU 2.9 0.8 - - - -
561G GLN* 1.3 75.7 - - + +
563G MET* 1.3 68.7 + - + +
565G ARG* 3.2 4.4 + - + +
566G GLN* 2.9 58.8 + - + +
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Residues in contact with MET 563 (chain G).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
233E LYS* 5.6 14.6 - - + -
559G LYS* 3.0 15.2 + - + +
560G LEU* 4.2 4.7 - - + +
562G LEU* 1.3 77.6 - - + +
564G LEU* 1.3 58.5 + - - +
566G GLN* 3.9 14.5 - - - +
567G ALA* 2.9 35.7 + - - +
564H LEU* 3.7 38.1 - - + -
568H ASN* 4.0 8.3 - - - +
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Residues in contact with LEU 564 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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560G LEU 3.0 17.7 + - - +
561G GLN* 4.3 4.7 - - - +
563G MET* 1.3 77.6 - - - +
565G ARG* 1.3 65.0 + - + +
567G ALA* 3.8 1.9 - - - +
568G ASN* 2.9 33.6 + - + +
560H LEU* 4.2 17.7 - - + -
563H MET* 4.2 26.9 - - + +
564H LEU* 4.3 23.9 - - + +
567H ALA* 5.5 7.9 - - + -
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Residues in contact with ARG 565 (chain G).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
561G GLN* 2.8 63.9 + - + +
562G LEU* 3.9 4.0 - - + +
564G LEU* 1.3 80.9 - - + +
566G GLN* 1.3 65.0 + - - +
568G ASN* 2.9 14.9 + - - +
569G ASP* 3.0 19.1 + - - +
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Residues in contact with GLN 566 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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562G LEU* 2.9 52.5 + - + +
563G MET* 3.9 15.4 - - - +
565G ARG* 1.3 71.1 - - + +
567G ALA* 1.3 60.1 + - - +
569G ASP* 3.1 10.0 + - - +
570G GLN* 2.9 26.5 + - - +
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Residues in contact with ALA 567 (chain G).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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563G MET* 2.9 19.4 + - + +
564G LEU* 4.1 2.9 - - - +
566G GLN* 1.3 79.9 - - + +
568G ASN* 1.3 64.6 + - - +
570G GLN* 3.3 11.2 - - + +
571G LEU* 2.9 22.2 + - - +
564H LEU* 5.2 3.1 - - + -
567H ALA* 6.1 5.2 - - + +
568H ASN* 4.4 16.8 - - - +
571H LEU* 5.5 7.8 - - + +
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Residues in contact with ASN 568 (chain G).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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564G LEU* 2.9 23.8 + - + +
565G ARG* 2.9 7.8 + - - +
567G ALA* 1.3 77.7 - - - +
569G ASP* 1.3 70.7 + - - +
570G GLN 3.1 0.3 + - - -
571G LEU* 3.2 11.3 + - - +
572G GLU* 2.9 45.3 + - - +
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Residues in contact with ASP 569 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
565G ARG* 3.0 13.9 + - - +
566G GLN* 3.5 9.4 - - - +
568G ASN* 1.3 81.3 + - - +
570G GLN* 1.3 56.3 + - - +
572G GLU* 3.2 16.7 - - - +
573G LYS* 3.0 24.4 + - - +
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Residues in contact with GLN 570 (chain G).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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566G GLN 2.9 13.8 + - - +
567G ALA* 3.3 15.7 - - + +
568G ASN 3.0 0.2 - - - -
569G ASP* 1.3 74.4 - - - +
571G LEU* 1.3 66.9 + - - +
572G GLU 3.1 0.9 - - - -
573G LYS* 3.2 32.3 + - - +
574G THR* 3.0 21.4 + - - -
571H LEU* 5.6 12.6 - - + -
575H MET* 6.0 4.0 - - - +
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Residues in contact with LEU 571 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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567G ALA 2.9 12.2 + - - +
568G ASN* 3.3 15.7 - - - +
570G GLN* 1.3 74.3 - - - +
572G GLU* 1.3 57.7 + - + +
574G THR* 3.0 8.0 + - + -
575G MET* 2.8 55.8 + - + +
567H ALA 5.3 2.7 - - - +
570H GLN* 3.2 29.4 - - + +
571H LEU* 3.7 24.2 - - + +
574H THR* 4.6 11.9 - - + -
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Residues in contact with GLU 572 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
568G ASN* 2.9 47.1 + - - +
569G ASP* 3.2 22.0 - - - +
570G GLN 3.1 0.2 - - - -
571G LEU* 1.3 78.9 - - - +
573G LYS* 1.3 61.7 + - - +
575G MET* 3.3 7.0 + - - +
576G LYS* 3.0 26.2 + - - +
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Residues in contact with LYS 573 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
569G ASP 3.0 12.0 + - - +
570G GLN* 3.2 31.8 + - - +
572G GLU* 1.3 76.8 - - - +
574G THR* 1.3 92.2 + - - +
576G LYS* 3.8 3.4 - - - +
577G ASP* 2.9 51.0 + - - +
575H MET* 4.2 11.9 - - - +
578H LYS* 5.0 5.1 - - - +
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Residues in contact with THR 574 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
570G GLN* 3.0 12.4 + - - -
571G LEU* 3.0 9.5 + - + +
573G LYS* 1.3 96.2 + - - +
575G MET* 1.3 63.1 + - - +
577G ASP* 3.5 4.1 + - - +
578G LYS* 3.0 24.9 + - - +
571H LEU* 5.3 1.6 - - + +
574H THR* 3.4 30.7 - - + +
575H MET* 3.2 41.2 - - + +
578H LYS* 4.4 8.7 - - + +
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Residues in contact with MET 575 (chain G).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
622C ARG* 6.3 0.7 - - - +
571G LEU* 2.8 37.4 + - + +
572G GLU* 3.5 9.4 - - - +
574G THR* 1.3 72.3 - - - +
576G LYS* 1.3 69.9 + - - +
578G LYS* 4.0 3.0 - - - +
579G GLN* 3.1 23.6 + - - +
570H GLN* 5.5 2.5 - - - +
574H THR* 3.3 39.5 - - + +
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Residues in contact with LYS 576 (chain G).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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572G GLU 3.0 16.0 + - - +
573G LYS* 3.9 2.9 - - - +
575G MET* 1.3 76.5 - - - +
577G ASP* 1.3 65.0 + - - +
579G GLN* 3.3 12.7 + - + +
580G GLU* 2.6 73.0 + - + +
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Residues in contact with ASP 577 (chain G).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
392E ARG* 4.3 4.2 + - - -
573G LYS* 2.9 52.5 + - - +
574G THR* 3.5 5.2 - - - +
576G LYS* 1.3 77.5 - - - +
578G LYS* 1.3 59.7 + - - +
580G GLU* 3.8 11.9 + - - +
581G LEU* 2.9 30.7 + - - +
578H LYS* 3.3 25.2 + - + +
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Residues in contact with LYS 578 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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615C GLN* 2.2 35.6 + - - +
574G THR 3.0 12.5 + - - +
575G MET* 4.1 3.4 - - - +
577G ASP* 1.3 77.0 - - - +
579G GLN* 1.3 71.0 + - - +
581G LEU* 3.0 19.1 + - + +
582G GLU* 3.0 16.3 + - - +
574H THR* 4.5 10.1 - - + +
577H ASP* 3.0 28.4 + - + +
578H LYS* 3.4 47.0 - - + +
581H LEU* 3.5 20.7 - - + +
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Residues in contact with GLN 579 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
575G MET 3.1 15.4 + - - +
576G LYS* 3.9 18.2 - - + +
578G LYS* 1.3 80.5 - - - +
580G GLU* 1.3 73.1 + - + +
582G GLU* 3.7 5.3 + - - +
583G ASP* 2.7 46.5 + - - +
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Residues in contact with GLU 580 (chain G).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
392E ARG* 3.8 11.6 + - - +
576G LYS* 2.6 65.9 + - - +
577G ASP* 3.8 12.7 - - - +
579G GLN* 1.3 82.8 - - + +
581G LEU* 1.3 66.3 + - - +
583G ASP* 3.0 7.3 + - - +
584G PHE* 2.9 22.3 + - - +
----------------------------------------------------------
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Residues in contact with LEU 581 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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391E PRO* 5.9 2.2 - - + -
392E ARG* 3.2 31.4 - - + +
577G ASP 2.9 18.5 + - - +
578G LYS* 3.0 13.9 + - + +
580G GLU* 1.3 75.1 - - - +
582G GLU* 1.3 79.2 + - - +
584G PHE* 2.9 14.8 - - + +
585G ILE* 2.9 30.4 - - + +
578H LYS* 3.7 24.2 - - + -
581H LEU* 3.6 28.9 - - + -
582H GLU* 3.9 28.9 - - + +
585H ILE* 6.6 0.2 - - + -
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Residues in contact with GLU 582 (chain G).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
611C GLU* 4.8 2.4 - - - +
612C GLU* 4.4 22.8 - - - +
615C GLN* 3.0 40.2 + - - +
578G LYS* 3.0 13.1 + - + +
579G GLN* 4.1 4.9 - - - +
581G LEU* 1.3 82.3 - - - +
583G ASP* 1.3 69.4 + - - +
584G PHE 2.9 1.8 - - - -
585G ILE* 2.9 18.5 + - + +
586G LYS* 3.0 18.3 + - + +
581H LEU* 3.3 33.2 - - + +
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Residues in contact with ASP 583 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
579G GLN* 2.7 36.6 + - - +
580G GLU* 3.0 10.8 + - - +
582G GLU* 1.3 78.6 - - - +
584G PHE* 1.3 62.4 + - - +
586G LYS* 3.4 15.9 + - - +
587G GLN* 3.1 21.3 + - - +
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Residues in contact with PHE 584 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
392E ARG* 3.3 57.7 - - + +
395E MET* 4.9 5.6 - - + -
396E TYR* 3.4 34.1 - + - -
399E LEU* 6.1 0.7 - - + -
580G GLU 2.9 11.6 + - - +
581G LEU* 2.9 17.9 - - + +
583G ASP* 1.3 76.6 - - - +
585G ILE* 1.3 90.6 + - + +
587G GLN* 2.8 41.7 + - - +
588G SER* 2.9 21.4 + - - -
585H ILE* 4.9 7.2 - - + -
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Residues in contact with ILE 585 (chain G).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
608C ILE* 4.5 21.5 - - + -
611C GLU* 4.6 11.0 - - - +
581G LEU* 2.9 26.7 - - + +
582G GLU* 2.9 18.7 + - + +
584G PHE* 1.3 86.5 - - + +
586G LYS* 1.3 66.8 + - + +
588G SER* 2.6 27.4 + - - -
589G SER* 2.9 13.5 + - - -
581H LEU* 5.0 4.0 - - + -
584H PHE* 5.1 2.5 - - + -
585H ILE* 3.3 47.6 - - + -
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Residues in contact with LYS 586 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
608C ILE* 4.4 21.8 - - + +
609C LEU* 6.2 0.7 - - + -
612C GLU* 4.4 22.0 - - - +
582G GLU* 3.0 16.2 + - + +
583G ASP* 3.6 18.8 - - - +
585G ILE* 1.3 85.1 - - + +
587G GLN* 1.3 65.8 + - - +
589G SER* 3.5 4.0 + - - -
590G GLU* 3.2 31.2 + - + +
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Residues in contact with GLN 587 (chain G).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
399E LEU* 6.2 1.2 - - - +
583G ASP 3.1 10.8 + - - +
584G PHE* 2.8 47.1 + - - +
585G ILE 3.0 0.4 - - - -
586G LYS* 1.3 81.3 - - - +
588G SER* 1.3 57.8 + - - +
590G GLU* 2.7 26.3 + - - +
591G ASP* 2.9 19.6 + - + +
----------------------------------------------------------
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Residues in contact with SER 588 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
395E MET* 3.7 16.7 - - - +
399E LEU* 3.0 31.7 - - - +
584G PHE* 2.9 22.7 + - - -
585G ILE* 2.6 21.7 + - - -
587G GLN* 1.3 76.8 - - - +
589G SER* 1.3 59.7 + - - -
591G ASP* 3.5 2.2 + - - +
592G SER* 2.8 30.9 + - - -
585H ILE* 6.1 1.3 - - - -
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Residues in contact with SER 589 (chain G).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
604C GLN* 2.3 51.0 + - - +
608C ILE* 4.2 18.8 - - - -
395E MET* 6.1 0.4 - - - -
585G ILE* 2.9 9.9 + - - -
586G LYS 4.0 5.4 - - - -
588G SER* 1.3 75.2 - - - +
590G GLU* 1.3 70.5 + - - +
592G SER* 3.8 7.0 - - - -
593G SER* 2.7 27.5 + - - -
588H SER* 6.0 0.7 - - - -
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Residues in contact with GLU 590 (chain G).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
604C GLN 3.9 5.9 - - - +
605C ALA* 4.3 15.1 - - - +
608C ILE* 5.0 3.7 - - + +
586G LYS* 3.2 21.5 + - + +
587G GLN* 2.7 19.4 + - - +
589G SER* 1.3 93.6 + - - +
591G ASP* 1.3 61.7 + - - +
592G SER 3.0 0.2 + - - -
593G SER* 4.7 3.3 + - - -
594G HIS* 3.0 62.5 + - + +
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Residues in contact with ASP 591 (chain G).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
399E LEU* 4.1 9.2 - - + +
402E LEU* 3.9 3.5 - - - +
587G GLN* 2.9 18.2 + - + +
588G SER* 3.7 2.5 - - - +
590G GLU* 1.3 79.5 - - - +
592G SER* 1.3 60.7 + - - +
594G HIS* 4.6 8.7 - - - +
595G GLN* 2.7 51.9 + - - +
----------------------------------------------------------
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Residues in contact with SER 592 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
604C GLN* 2.8 23.1 + - - -
395E MET* 4.4 11.3 - - - +
399E LEU* 3.8 17.7 - - - +
402E LEU* 4.1 3.8 - - - +
588G SER 2.8 20.9 + - - -
589G SER* 3.4 5.8 - - - -
591G ASP* 1.3 80.6 - - - +
593G SER* 1.3 60.1 + - - +
596G ILE* 2.9 34.5 + - - +
592H SER* 4.9 2.9 + - - -
----------------------------------------------------------
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Residues in contact with SER 593 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
600C VAL* 5.1 2.2 - - - -
601C LEU* 4.7 20.4 - - - -
604C GLN* 2.8 34.1 + - - +
605C ALA* 5.4 1.6 - - - -
589G SER* 2.7 17.1 + - - -
590G GLU* 4.0 4.5 - - - -
592G SER* 1.3 71.0 - - - +
594G HIS* 1.3 62.5 - - - +
596G ILE* 2.3 38.3 + - - -
597G SER* 2.9 13.4 + - - -
----------------------------------------------------------
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Residues in contact with HIS 594 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
590G GLU* 3.0 55.2 + - + +
591G ASP* 5.2 7.0 - - - +
593G SER* 1.3 77.7 - - - +
595G GLN* 1.3 64.8 + - + +
597G SER* 4.4 2.8 - - - -
598G ALA* 3.1 27.0 + - - +
----------------------------------------------------------
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Residues in contact with GLN 595 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
399E LEU* 5.5 2.4 - - - +
402E LEU* 3.0 39.6 - - + +
403E SER* 3.9 15.8 - - - -
406E ASN* 4.4 3.1 - - - +
591G ASP* 2.7 46.8 + - - +
592G SER 4.0 0.6 + - - -
593G SER 3.0 0.4 - - - -
594G HIS* 1.3 82.9 - - + +
596G ILE* 1.3 60.7 + - - +
598G ALA* 3.5 4.8 - - - -
599G LEU* 2.7 32.8 + - + +
----------------------------------------------------------
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Residues in contact with ILE 596 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
600C VAL* 4.0 23.6 - - + -
604C GLN* 5.1 2.7 - - - +
402E LEU* 4.1 20.6 - - + -
592G SER* 2.9 21.0 + - - +
593G SER* 2.3 35.1 + - - +
595G GLN* 1.3 70.0 - - - +
597G SER* 1.3 60.4 + - - +
599G LEU* 2.8 26.4 + - + +
600G VAL* 2.8 16.0 + - + +
595H GLN* 4.7 17.0 - - - +
596H ILE* 5.4 8.7 - - + -
599H LEU* 5.1 12.6 - - + -
----------------------------------------------------------
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Residues in contact with SER 597 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
597C SER* 2.9 50.1 + - - -
600C VAL* 3.2 16.3 - - - +
601C LEU* 4.1 5.9 + - - +
593G SER 2.9 8.1 + - - -
594G HIS* 4.4 2.9 - - - -
596G ILE* 1.3 75.9 - - - +
598G ALA* 1.3 58.3 + - - +
599G LEU 2.8 4.7 - - - -
600G VAL* 4.1 6.2 - - - +
601G LEU* 2.8 37.0 + - - +
----------------------------------------------------------
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Residues in contact with ALA 598 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
406E ASN* 3.5 12.3 - - - +
594G HIS 3.1 21.9 + - - +
595G GLN* 3.5 5.8 - - - +
597G SER* 1.3 75.9 - - - +
599G LEU* 1.3 61.9 + - - +
601G LEU* 4.6 12.9 - - + +
602G ARG* 3.8 17.2 + - - +
----------------------------------------------------------
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Residues in contact with LEU 599 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
402E LEU* 3.5 26.5 - - + -
405E LEU* 3.7 20.6 - - + +
406E ASN* 3.0 52.0 - - + +
409E GLN* 5.3 3.8 - - + +
595G GLN* 2.7 20.1 + - + +
596G ILE* 2.8 20.9 + - + +
598G ALA* 1.3 78.9 - - - +
600G VAL* 1.3 64.4 + - - +
602G ARG* 3.0 23.2 + - - +
603G ALA* 2.8 19.1 + - - +
----------------------------------------------------------
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Residues in contact with VAL 600 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
593C SER* 4.1 1.0 + - - +
596C ILE* 3.5 33.4 - - + -
597C SER* 4.3 3.4 - - - -
600C VAL* 6.3 0.9 - - + -
595D GLN* 4.4 18.6 - - - +
596G ILE* 2.8 13.9 + - + +
597G SER* 3.7 15.9 - - - +
599G LEU* 1.3 71.5 - - - +
601G LEU* 1.3 70.9 + - + +
603G ALA* 2.4 29.6 + - + -
604G GLN* 2.9 20.2 + - + +
599H LEU* 5.3 4.7 - - + -
602H ARG* 4.0 24.5 - - - +
----------------------------------------------------------
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Residues in contact with LEU 601 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
593C SER* 3.8 16.3 + - - +
594C HIS* 5.2 17.9 - - + +
597C SER* 3.4 31.2 - - - +
597G SER 2.8 16.6 + - - +
598G ALA* 4.6 8.7 - - + -
600G VAL* 1.3 82.8 - - - +
602G ARG* 1.3 72.4 + - + +
605G ALA* 3.6 18.5 - - - +
----------------------------------------------------------
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Residues in contact with ARG 602 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
406E ASN* 3.4 27.0 + - - +
409E GLN* 2.9 41.6 + - - +
410E GLU* 4.2 12.9 - - - +
413E MET* 5.1 10.1 - - - -
598G ALA 3.8 9.4 + - - +
599G LEU* 3.0 48.8 + - - +
601G LEU* 1.3 90.8 - - + +
603G ALA* 1.3 52.8 + - - +
605G ALA* 3.3 2.0 - - - +
606G SER* 2.5 58.4 + - - -
----------------------------------------------------------
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Residues in contact with ALA 603 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
409E GLN* 3.0 32.8 - - - +
599G LEU* 2.8 11.3 + - + +
600G VAL* 2.4 24.1 + - + +
602G ARG* 1.3 71.0 - - - +
604G GLN* 1.3 56.2 + - - +
605G ALA 2.7 2.6 + - - -
606G SER* 2.3 27.6 + - - -
607G GLU* 2.9 22.4 + - - +
602H ARG* 4.7 2.2 - - + +
----------------------------------------------------------
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Residues in contact with GLN 604 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
395A MET* 4.3 3.2 - - - +
589C SER* 3.0 29.6 + - - +
592C SER* 2.8 25.8 + - - -
593C SER* 3.2 14.8 - - - +
596C ILE* 5.9 0.5 - - - +
588D SER* 2.6 28.6 + - - +
592D SER* 3.2 20.2 + - - -
600G VAL* 2.9 14.4 + - + +
603G ALA* 1.3 73.1 - - - +
605G ALA* 1.3 55.1 + - - +
607G GLU* 3.0 16.3 - - - +
608G ILE* 3.1 22.3 - - - +
602H ARG* 3.2 28.2 + - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il