Contacts of the helix formed by residues 553 - 607 (chain C) in PDB entry 4Q9U
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with THR 553 (chain C).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
552C GLU* 1.3 83.7 + - - +
554C ARG* 1.3 59.9 + - + +
556C GLN* 3.1 16.8 + - - +
557C VAL* 3.0 31.7 + - + +
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Residues in contact with ARG 554 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
552C GLU 3.2 2.7 - - - +
553C THR* 1.3 79.5 - - + +
555C ASP* 1.3 62.3 + - - +
557C VAL* 3.2 18.1 + - + +
558C LYS* 3.0 31.0 + - - +
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Residues in contact with ASP 555 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
552C GLU* 3.0 20.8 + - + +
554C ARG* 1.3 76.4 - - - +
556C GLN* 1.3 66.6 + - - +
557C VAL 2.9 1.3 - - - -
558C LYS* 3.1 11.0 + - - +
559C LYS* 3.0 30.9 + - - +
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Residues in contact with GLN 556 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
552C GLU* 2.9 28.7 + - - +
553C THR* 3.1 21.0 + - - +
555C ASP* 1.3 75.4 - - - +
557C VAL* 1.3 61.3 + - + +
559C LYS* 4.1 3.3 - - - -
560C LEU* 2.9 46.3 + - + +
558D LYS* 4.3 21.0 - - - +
560D LEU* 6.2 0.6 - - - +
561D GLN* 3.1 35.6 + - - +
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Residues in contact with VAL 557 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
553C THR* 3.0 22.1 + - + +
554C ARG* 3.5 23.6 - - + +
555C ASP 2.9 1.2 - - - -
556C GLN* 1.3 84.4 - - + +
558C LYS* 1.3 65.9 + - - +
560C LEU* 3.8 4.7 - - - +
561C GLN* 2.9 49.2 + - - +
558D LYS 5.5 7.4 - - - +
560D LEU* 4.2 13.0 - - + +
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Residues in contact with LYS 558 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
554C ARG* 3.0 19.8 + - - +
555C ASP* 3.1 13.2 + - - +
557C VAL* 1.3 75.3 - - - +
559C LYS* 1.3 60.9 + - - +
561C GLN* 2.8 25.9 + - + +
562C LEU* 2.9 25.3 + - + +
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Residues in contact with LYS 559 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
555C ASP* 3.0 21.2 + - - +
556C GLN* 4.3 3.6 - - - +
558C LYS* 1.3 76.8 - - - +
560C LEU* 1.3 63.1 + - + +
562C LEU* 3.4 7.7 + - + +
563C MET* 3.0 60.9 + - + +
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Residues in contact with LEU 560 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
556C GLN* 2.9 33.6 + - + +
557C VAL* 3.8 0.7 - - + +
559C LYS* 1.3 82.1 - - + +
561C GLN* 1.3 63.7 + - - +
563C MET* 3.1 12.0 + - + +
564C LEU* 2.9 24.4 + - - +
560D LEU* 3.5 40.5 - - + +
561D GLN* 3.2 50.0 - - + +
564D LEU* 4.2 13.2 - - + +
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Residues in contact with GLN 561 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
557C VAL* 2.9 38.8 + - - +
558C LYS* 2.8 16.6 + - + +
560C LEU* 1.3 72.0 - - - +
562C LEU* 1.3 57.1 + - - +
564C LEU* 4.6 4.0 - - - +
565C ARG* 3.0 61.0 + - + +
560D LEU* 4.0 16.6 - - + +
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Residues in contact with LEU 562 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
558C LYS* 2.9 24.9 + - + +
559C LYS* 3.5 14.4 - - + +
560C LEU 3.1 0.2 - - - -
561C GLN* 1.3 75.9 - - - +
563C MET* 1.3 76.4 + - + +
564C LEU 3.2 0.2 + - - -
565C ARG* 5.6 3.4 - - + -
566C GLN* 3.0 72.8 + - + +
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Residues in contact with MET 563 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
559C LYS* 3.0 52.7 + - + +
560C LEU* 3.1 10.5 + - + +
562C LEU* 1.3 86.1 - - + +
564C LEU* 1.3 57.9 + - - +
566C GLN* 4.0 13.2 - - - +
567C ALA* 2.9 33.4 + - - +
564D LEU* 3.6 26.0 - - + -
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Residues in contact with LEU 564 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
560C LEU 2.9 16.4 + - - +
561C GLN* 4.2 4.0 - - - +
563C MET* 1.3 74.8 - - - +
565C ARG* 1.3 97.1 + - - +
567C ALA* 3.8 2.5 - - - +
568C ASN* 2.9 34.6 + - + +
560D LEU* 4.6 15.0 - - + -
563D MET* 4.4 22.7 - - + +
564D LEU* 3.5 13.6 - - + +
567D ALA* 4.3 20.6 - - + -
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Residues in contact with ARG 565 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
561C GLN* 3.0 50.6 + - + +
562C LEU* 4.2 4.7 - - + +
564C LEU* 1.3 102.1 - - - +
566C GLN* 1.3 65.3 + - + +
568C ASN* 3.1 5.9 + - - +
569C ASP* 3.0 29.0 + - - +
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Residues in contact with GLN 566 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
562C LEU* 3.0 61.7 + - + +
563C MET* 4.0 13.6 - - - +
565C ARG* 1.3 75.8 - - + +
567C ALA* 1.3 63.8 + - - +
568C ASN 3.3 0.2 + - - -
569C ASP* 3.3 7.9 + - - +
570C GLN* 3.0 23.6 + - - +
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Residues in contact with ALA 567 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
563C MET 2.9 23.0 + - - +
564C LEU* 3.9 4.5 - - - +
566C GLN* 1.3 77.4 - - - +
568C ASN* 1.3 58.2 + - - +
570C GLN* 3.1 13.8 + - - +
571C LEU* 2.8 30.2 + - - +
564D LEU* 5.6 0.9 - - + -
567D ALA* 4.5 23.3 - - + +
568D ASN* 5.1 7.2 - - - +
571D LEU* 3.9 6.8 - - + +
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Residues in contact with ASN 568 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
564C LEU* 2.9 33.8 + - + +
565C ARG* 3.1 6.7 + - - +
567C ALA* 1.3 73.7 - - - +
569C ASP* 1.3 66.1 + - - +
570C GLN 3.0 1.1 - - - -
571C LEU* 4.3 12.6 - - - +
572C GLU* 2.4 59.7 + - - +
567D ALA* 4.9 10.2 - - - +
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Residues in contact with ASP 569 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
565C ARG* 3.0 17.2 + - - +
566C GLN* 3.9 8.9 - - - +
568C ASN* 1.3 75.6 - - - +
570C GLN* 1.3 57.5 + - - +
572C GLU* 3.6 13.3 + - - +
573C LYS* 2.9 26.0 + - - +
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Residues in contact with GLN 570 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
566C GLN 3.0 12.9 + - - +
567C ALA* 3.3 16.7 - - - +
568C ASN 3.0 0.4 - - - -
569C ASP* 1.3 76.4 - - - +
571C LEU* 1.3 65.1 + - - +
572C GLU 3.2 0.9 - - - -
573C LYS* 3.1 22.7 + - + +
574C THR* 2.9 22.3 + - - +
571D LEU* 4.2 11.6 - - + +
575D MET* 6.3 2.0 - - - -
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Residues in contact with LEU 571 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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567C ALA 2.8 17.4 + - - +
568C ASN* 3.8 13.7 - - - +
570C GLN* 1.3 70.4 - - - +
572C GLU* 1.3 94.4 + - + +
574C THR* 2.9 13.9 + - - -
575C MET* 2.9 35.6 + - + +
567D ALA 5.3 4.7 - - - +
570D GLN* 4.7 12.6 - - + +
571D LEU* 3.5 49.6 - - + +
574D THR* 5.3 6.0 - - + +
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Residues in contact with GLU 572 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
568C ASN* 2.4 57.4 + - - +
569C ASP* 3.6 16.3 + - - +
571C LEU* 1.3 88.6 - - + +
573C LYS* 1.3 62.8 + - - +
575C MET* 3.1 21.6 - - - +
576C LYS* 3.1 21.0 + - - +
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Residues in contact with LYS 573 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
569C ASP 2.9 15.7 + - - +
570C GLN* 3.2 26.5 - - + +
571C LEU 3.1 0.2 - - - -
572C GLU* 1.3 75.2 - - - +
574C THR* 1.3 81.6 + - - +
576C LYS* 2.9 16.0 + - - +
577C ASP* 2.6 47.9 + - - +
578D LYS* 3.9 15.6 - - - +
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Residues in contact with THR 574 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
570C GLN* 2.9 11.3 + - - +
571C LEU 2.9 12.7 + - - -
573C LYS* 1.3 92.5 + - - +
575C MET* 1.3 62.6 + - - -
577C ASP* 3.0 7.5 + - - -
578C LYS* 2.9 23.9 + - + +
571D LEU* 4.2 12.5 - - + +
574D THR* 3.4 29.2 - - + +
575D MET* 4.7 10.9 - - + -
578D LYS* 4.1 25.4 - - + -
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Residues in contact with MET 575 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
571C LEU* 2.9 32.3 + - + +
572C GLU* 3.1 42.6 - - - +
574C THR* 1.3 74.3 - - - +
576C LYS* 1.3 64.1 + - + +
578C LYS* 4.0 11.1 - - - +
579C GLN* 3.0 28.9 + - - +
574D THR* 4.4 12.8 - - + +
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Residues in contact with LYS 576 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
572C GLU 3.1 12.2 + - - +
573C LYS* 2.9 12.7 + - - +
575C MET* 1.3 80.5 - - + +
577C ASP* 1.3 81.6 + - - +
579C GLN* 3.8 6.7 - - - +
580C GLU* 2.9 50.7 + - + +
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Residues in contact with ASP 577 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
573C LYS* 2.6 66.8 + - - +
574C THR* 3.0 5.5 + - - +
576C LYS* 1.3 89.7 + - + +
578C LYS* 1.3 57.9 + - - +
580C GLU* 3.1 9.2 - - - +
581C LEU* 2.9 33.8 + - - +
578D LYS* 4.1 18.4 - - - +
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Residues in contact with LYS 578 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
574C THR* 2.9 16.3 + - + +
575C MET* 4.6 11.4 - - - +
577C ASP* 1.3 72.1 - - - +
579C GLN* 1.3 81.3 + - - +
580C GLU 2.9 1.3 - - - -
581C LEU* 2.8 16.5 + - - +
582C GLU* 3.1 13.1 + - - +
574D THR* 3.4 26.6 + - + +
577D ASP* 3.5 28.1 + - + +
578D LYS* 3.6 34.6 - - + +
581D LEU* 4.6 3.7 - - + +
615G GLN* 3.3 33.3 - - - +
619G GLN* 6.1 2.0 - - - +
622G ARG* 5.5 0.8 - - - +
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Residues in contact with GLN 579 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
575C MET 3.0 18.0 + - - +
576C LYS* 3.8 7.2 - - + +
578C LYS* 1.3 88.3 - - - +
580C GLU* 1.3 74.3 + - - +
582C GLU* 3.2 30.3 + - + +
583C ASP* 3.0 23.5 + - - +
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Residues in contact with GLU 580 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
392A ARG* 3.6 25.8 + - - -
576C LYS* 2.9 46.3 + - + +
577C ASP* 3.1 12.5 - - - +
579C GLN* 1.3 87.7 + - - +
581C LEU* 1.3 59.3 + - - +
583C ASP* 2.9 29.2 + - + +
584C PHE* 2.9 8.4 + - + +
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Residues in contact with LEU 581 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
392A ARG* 3.2 45.8 - - + +
577C ASP 3.1 16.6 - - - +
578C LYS* 3.2 8.7 - - - +
580C GLU* 1.3 79.8 - - - +
582C GLU* 1.3 61.2 + - - +
584C PHE* 2.8 34.3 + - + +
585C ILE* 3.0 17.2 + - + +
578D LYS* 5.4 10.3 - - + -
581D LEU* 3.7 19.3 - - + -
582D GLU* 5.5 7.0 - - - +
585D ILE* 5.1 10.8 - - + -
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Residues in contact with GLU 582 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
578C LYS* 3.1 8.3 + - - +
579C GLN* 3.2 26.3 + - - +
581C LEU* 1.3 75.9 - - - +
583C ASP* 1.3 76.3 + - - +
585C ILE* 3.2 8.6 + - + +
586C LYS* 2.9 27.3 + - - +
581D LEU* 3.7 25.4 - - + +
612G GLU* 6.0 5.4 - - - +
615G GLN* 3.6 25.1 + - - +
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Residues in contact with ASP 583 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
579C GLN* 3.0 35.4 + - - +
580C GLU* 2.9 13.1 + - + +
582C GLU* 1.3 89.1 - - - +
584C PHE* 1.3 56.6 + - - +
586C LYS* 4.2 6.7 - - - +
587C GLN* 2.8 32.7 + - - +
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Residues in contact with PHE 584 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
392A ARG* 3.1 66.0 - - + +
395A MET* 4.5 11.9 - - + -
396A TYR* 3.3 30.1 - + - -
580C GLU* 2.9 8.1 + - - +
581C LEU* 2.8 27.9 + - + +
583C ASP* 1.3 75.9 - - - +
585C ILE* 1.3 73.6 + - + -
587C GLN* 3.0 21.4 + - - +
588C SER* 2.9 44.3 + - - -
585D ILE* 4.9 1.3 - - + -
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Residues in contact with ILE 585 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
581C LEU* 3.0 15.3 + - + +
582C GLU* 3.3 11.7 - - + +
584C PHE* 1.3 87.0 - - + +
586C LYS* 1.3 75.9 + - - +
588C SER* 3.5 6.1 - - - -
589C SER* 2.9 23.2 + - - +
581D LEU* 4.4 19.7 - - + -
584D PHE* 3.7 33.0 - - + -
585D ILE* 3.3 44.0 - - + -
608G ILE* 5.5 3.6 - - + +
611G GLU* 5.3 2.7 - - + -
----------------------------------------------------------
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Residues in contact with LYS 586 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
582C GLU 2.9 18.8 + - - +
583C ASP* 4.2 7.0 - - - +
585C ILE* 1.3 83.6 - - + +
587C GLN* 1.3 71.8 + - + +
589C SER* 3.9 0.9 - - - -
590C GLU* 3.0 49.8 + - + +
608G ILE* 3.9 33.6 - - + +
612G GLU* 5.3 0.9 - - - +
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Residues in contact with GLN 587 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
583C ASP 2.8 24.2 + - - +
584C PHE* 3.0 29.4 + - - +
586C LYS* 1.3 85.3 - - + +
588C SER* 1.3 74.2 + - - +
590C GLU* 3.0 14.3 - - - +
591C ASP* 3.0 27.1 + - - +
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Residues in contact with SER 588 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
395A MET* 2.5 41.6 - - - +
399A LEU* 3.8 7.4 - - - +
584C PHE* 2.9 31.6 + - - -
585C ILE* 3.6 10.3 - - - -
586C LYS 3.1 0.4 - - - -
587C GLN* 1.3 81.9 + - - +
589C SER* 1.3 50.9 + - - +
591C ASP* 2.5 30.7 + - - +
592C SER* 2.8 13.0 + - - -
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Residues in contact with SER 589 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
395A MET* 4.2 7.9 - - - -
585C ILE* 2.9 18.1 + - - +
586C LYS 4.2 1.1 - - - -
588C SER* 1.3 69.1 + - - +
590C GLU* 1.3 67.0 - - - +
592C SER* 3.6 11.4 - - - -
593C SER* 3.0 28.6 + - - -
584D PHE* 5.7 2.9 - - - -
585D ILE* 4.7 6.2 - - - +
588D SER* 3.7 6.4 + - - -
604G GLN* 3.0 40.3 + - - +
608G ILE* 4.7 7.4 - - - -
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Residues in contact with GLU 590 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
586C LYS* 3.0 49.1 + - - +
587C GLN* 3.0 15.9 - - - +
588C SER 3.0 0.2 - - - -
589C SER* 1.3 82.9 - - - +
591C ASP* 1.3 56.3 + - - +
593C SER* 3.1 1.5 + - - -
594C HIS* 2.8 35.0 + - + +
605G ALA* 3.2 35.9 - - - +
608G ILE* 4.8 7.4 - - - +
----------------------------------------------------------
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Residues in contact with ASP 591 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
399A LEU* 4.1 17.3 - - + -
402A LEU* 3.9 2.4 - - - +
587C GLN* 3.0 15.6 + - - +
588C SER* 2.5 17.7 + - - +
590C GLU* 1.3 70.3 - - - +
592C SER* 1.3 66.9 + - - +
594C HIS* 4.6 3.2 - - - +
595C GLN* 2.9 42.8 + - + +
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Residues in contact with SER 592 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
395A MET* 3.8 21.5 - - - -
399A LEU* 4.8 2.2 - - - +
402A LEU* 3.8 13.5 - - - +
588C SER 2.8 4.9 + - - -
589C SER* 3.6 19.7 - - - -
591C ASP* 1.3 77.3 - - - +
593C SER* 1.3 61.2 + - - +
596C ILE* 2.9 35.4 + - - +
592D SER* 4.1 7.8 + - - -
604G GLN* 2.8 25.5 + - - -
----------------------------------------------------------
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Residues in contact with SER 593 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
589C SER 3.0 12.6 + - - -
590C GLU* 3.5 4.9 - - - -
591C ASP 3.1 0.2 - - - -
592C SER* 1.3 81.7 - - - +
594C HIS* 1.3 62.5 + - - +
596C ILE* 2.7 30.4 + - - +
597C SER* 3.0 14.5 + - - -
600G VAL* 4.1 1.2 + - - +
601G LEU* 3.8 20.9 + - - +
604G GLN* 3.2 29.8 + - - +
605G ALA* 3.5 12.7 + - - -
----------------------------------------------------------
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Residues in contact with HIS 594 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
590C GLU* 2.8 16.2 + - + +
591C ASP* 4.9 3.1 - - - +
593C SER* 1.3 78.2 - - - +
595C GLN* 1.3 68.1 + - + +
597C SER* 3.3 4.5 + - - -
598C ALA* 3.1 30.4 + - + +
601G LEU* 5.2 15.0 - - + +
----------------------------------------------------------
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Residues in contact with GLN 595 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
399A LEU* 6.0 0.2 - - + -
402A LEU* 3.2 38.0 - - + +
403A SER* 4.8 5.9 + - - -
406A ASN* 4.2 21.2 + - - +
591C ASP* 2.9 38.3 + - - +
593C SER 3.0 0.6 - - - -
594C HIS* 1.3 84.3 + - + +
596C ILE* 1.3 63.4 + - - +
598C ALA* 3.6 8.4 + - - +
599C LEU* 2.9 24.3 + - - +
----------------------------------------------------------
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Residues in contact with ILE 596 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
402A LEU* 4.4 16.6 - - + -
592C SER* 2.9 19.3 + - - +
593C SER* 2.7 21.8 + - - +
595C GLN* 1.3 74.2 - - - +
597C SER* 1.3 62.3 + - - +
599C LEU* 2.9 34.0 - - + +
600C VAL* 2.9 28.8 + - + +
595D GLN* 5.3 13.9 - - + +
596D ILE* 4.5 18.2 - - + -
599D LEU* 5.1 7.6 - - + -
600G VAL* 3.5 30.3 - - + -
604G GLN* 5.9 0.7 - - - +
----------------------------------------------------------
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Residues in contact with SER 597 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
593C SER 3.0 12.6 + - - -
594C HIS 3.8 3.1 - - - -
596C ILE* 1.3 75.8 - - - +
598C ALA* 1.3 67.3 + - - +
599C LEU 3.0 1.3 - - - -
600C VAL* 4.6 0.4 - - - -
601C LEU* 2.9 23.7 + - - +
597G SER* 2.9 44.8 + - - +
600G VAL* 4.3 2.7 - - - -
601G LEU* 3.4 32.7 - - - +
----------------------------------------------------------
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Residues in contact with ALA 598 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
406A ASN* 4.2 5.9 + - - +
594C HIS* 3.1 22.6 + - + +
595C GLN* 4.0 9.2 - - - +
597C SER* 1.3 80.2 + - - +
599C LEU* 1.3 58.6 + - - +
601C LEU* 3.1 33.3 - - + +
602C ARG* 3.4 16.4 + - - +
----------------------------------------------------------
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Residues in contact with LEU 599 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
402A LEU* 4.6 6.5 - - + +
405A LEU* 4.1 14.1 - - + -
406A ASN* 3.2 50.2 - - + +
409A GLN* 4.1 13.6 + - + +
595C GLN 2.9 15.0 + - - +
596C ILE* 2.9 34.1 - - + +
597C SER 3.0 1.4 - - - -
598C ALA* 1.3 75.0 - - - +
600C VAL* 1.3 69.6 + - + +
601C LEU 3.1 0.9 - - - -
602C ARG* 2.7 26.0 + - - +
603C ALA 3.0 8.8 + - - -
596D ILE* 6.3 0.2 - - + -
599D LEU* 4.0 26.0 - - + -
----------------------------------------------------------
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Residues in contact with VAL 600 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
596C ILE* 2.9 15.7 + - + +
597C SER* 3.9 0.4 - - - +
599C LEU* 1.3 76.8 - - + +
601C LEU* 1.3 65.4 + - - +
602C ARG 2.8 1.6 - - - -
603C ALA* 2.5 37.6 + - + +
604C GLN* 3.0 23.9 + - + +
599D LEU* 4.2 13.0 - - + -
602D ARG* 3.7 17.0 - - - +
593G SER* 5.3 2.2 - - - -
596G ILE* 4.0 21.3 - - + -
597G SER* 3.2 21.8 - - - +
600G VAL* 6.3 1.1 - - + -
595H GLN* 5.8 5.8 - - - +
----------------------------------------------------------
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Residues in contact with LEU 601 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
597C SER* 2.9 14.9 + - - +
598C ALA* 3.1 36.1 - - + +
600C VAL* 1.3 83.1 - - - +
602C ARG* 1.3 65.9 + - + +
605C ALA* 2.9 36.0 + - + +
593G SER* 4.7 13.4 - - - -
597G SER* 4.5 6.3 - - - +
----------------------------------------------------------
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Residues in contact with ARG 602 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
406A ASN* 2.7 36.9 + - - +
409A GLN* 4.1 22.5 - - + +
410A GLU* 3.5 39.7 + - - +
413A MET* 3.9 29.0 - - + +
598C ALA* 3.9 12.9 + - - +
599C LEU* 2.7 14.1 + - - +
601C LEU* 1.3 88.1 - - + +
603C ALA* 1.3 66.9 + - - +
605C ALA* 4.6 2.2 - - + -
606C SER* 2.9 26.3 + - - -
----------------------------------------------------------
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Residues in contact with ALA 603 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
409A GLN* 3.1 28.6 - - - +
599C LEU 3.0 5.3 + - - -
600C VAL* 2.5 33.3 + - + +
602C ARG* 1.3 70.5 - - - +
604C GLN* 1.3 52.9 + - - +
606C SER 2.6 6.2 + - - -
607C GLU* 2.3 57.3 + - - +
599D LEU* 5.3 3.8 - - + -
602D ARG* 3.9 3.1 - - + +
----------------------------------------------------------
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Residues in contact with GLN 604 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
600C VAL* 3.0 11.4 + - + +
603C ALA* 1.3 74.1 - - - +
605C ALA* 1.3 60.5 + - - +
606C SER 3.2 1.6 - - - -
607C GLU* 3.7 10.5 - - - +
608C ILE* 3.2 18.9 - - + +
602D ARG* 3.4 27.4 - - - +
395E MET* 5.3 2.2 - - - +
589G SER* 2.3 33.5 + - - +
592G SER* 2.8 29.6 + - - -
593G SER* 2.8 31.9 + - - +
596G ILE* 5.1 2.1 - - - +
588H SER* 3.5 22.2 + - - -
592H SER* 3.7 16.8 + - - -
----------------------------------------------------------
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Residues in contact with ALA 605 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
601C LEU* 2.9 29.3 + - + +
602C ARG* 4.4 2.9 - - + +
604C GLN* 1.3 78.8 - - - +
606C SER* 1.3 58.8 + - - +
608C ILE* 4.6 0.9 - - - -
609C LEU* 2.7 31.7 - - - +
590G GLU* 4.3 16.6 + - - +
593G SER* 4.7 2.1 + - - -
----------------------------------------------------------
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Residues in contact with SER 606 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
409A GLN* 4.6 2.3 - - - +
412A ILE* 4.5 10.9 - - - +
413A MET* 3.1 43.5 - - - +
602C ARG* 2.9 18.4 + - - -
603C ALA* 2.6 11.3 + - - -
605C ALA* 1.3 74.6 - - - +
607C GLU* 1.3 63.1 + - - -
608C ILE 2.9 2.5 - - - -
609C LEU* 2.7 30.1 + - - +
610C LEU* 3.7 4.3 + - - +
----------------------------------------------------------
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Residues in contact with GLU 607 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
409A GLN* 5.2 5.1 - - - +
412A ILE* 5.6 2.0 - - + -
603C ALA* 2.3 48.4 + - - +
604C GLN* 3.6 10.2 + - - +
606C SER* 1.3 71.2 + - - -
608C ILE* 1.3 63.6 + - + +
610C LEU* 2.9 31.4 - - - +
611C GLU* 3.0 5.2 - - - +
602D ARG* 2.6 52.4 + - - +
603D ALA* 6.2 0.2 - - - -
606D SER* 3.1 32.5 + - - +
584H PHE* 4.6 9.3 - - + -
588H SER* 5.2 5.7 + - - -
591H ASP* 5.1 0.9 - - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il