Contacts of the helix formed by residues 559 - 632 (chain D) in PDB entry 4Q9U
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with LYS 559 (chain D).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
558D LYS* 1.3 82.6 - - + +
560D LEU* 1.3 61.0 + - - +
561D GLN 3.3 0.4 - - - -
562D LEU* 2.9 60.1 - - + +
563D MET* 3.4 33.2 + - + +
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Residues in contact with LEU 560 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
556C GLN* 6.2 0.4 - - - +
557C VAL* 4.2 18.2 - - + +
560C LEU* 3.5 46.2 - - + +
561C GLN* 4.0 31.0 - - + +
564C LEU* 4.6 19.3 - - + -
558D LYS 3.1 7.2 - - - +
559D LYS* 1.3 80.1 - - - +
561D GLN* 1.3 56.6 + - + +
563D MET* 3.5 9.6 + - + +
564D LEU* 2.9 29.9 + - + +
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Residues in contact with GLN 561 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
556C GLN* 3.1 36.8 + - - +
560C LEU* 3.2 31.9 - - + +
558D LYS* 3.4 12.8 + - - +
559D LYS 3.3 1.2 - - - -
560D LEU* 1.3 76.6 - - + +
562D LEU* 1.3 56.4 + - - +
564D LEU* 5.3 0.2 - - - +
565D ARG* 2.5 65.8 + - - +
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Residues in contact with LEU 562 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
558D LYS 4.4 4.3 - - - +
559D LYS* 2.9 71.3 - - + +
561D GLN* 1.3 71.9 - - - +
563D MET* 1.3 73.0 + - + +
564D LEU 3.1 1.6 - - - -
565D ARG* 3.0 13.1 + - - +
566D GLN* 3.0 25.1 + - - +
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Residues in contact with MET 563 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
564C LEU* 4.4 16.2 - - + +
559D LYS* 3.4 43.4 + - + +
560D LEU* 4.0 9.0 - - + +
562D LEU* 1.3 80.9 - - + +
564D LEU* 1.3 52.7 + - - +
566D GLN* 3.0 15.2 - - + +
567D ALA* 2.8 28.1 + - - +
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Residues in contact with LEU 564 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
560C LEU* 4.2 15.5 - - + +
563C MET* 3.6 23.8 - - + +
564C LEU* 3.5 42.3 - - + +
567C ALA* 5.6 0.7 - - + -
560D LEU* 2.9 23.8 + - + +
561D GLN* 4.4 2.0 - - - +
562D LEU 3.1 0.2 - - - -
563D MET* 1.3 72.0 - - - +
565D ARG* 1.3 88.0 + - - +
566D GLN 3.0 1.1 - - - -
567D ALA* 2.9 18.0 + - + +
568D ASN* 3.0 22.0 + - - +
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Residues in contact with ARG 565 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
561D GLN* 2.5 69.6 + - - +
562D LEU* 3.0 12.3 + - - +
564D LEU* 1.3 94.3 - - - +
566D GLN* 1.3 54.2 - - + +
568D ASN* 3.0 19.5 + - - +
569D ASP* 2.6 35.8 + - - +
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Residues in contact with GLN 566 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
562D LEU 3.0 15.2 + - - +
563D MET* 3.0 22.7 - - + +
565D ARG* 1.3 73.3 - - + +
567D ALA* 1.3 57.1 + - - -
569D ASP* 2.5 40.1 - - - +
570D GLN* 2.6 47.4 + - - +
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Residues in contact with ALA 567 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
564C LEU* 4.3 17.0 - - + -
567C ALA* 4.5 19.8 - - + +
568C ASN* 4.9 9.7 - - - +
571C LEU* 5.3 4.5 - - - +
563D MET 2.8 16.1 + - - +
564D LEU* 2.9 27.7 + - + +
566D GLN* 1.3 73.9 - - - +
568D ASN* 1.3 62.3 + - - +
570D GLN* 5.3 2.0 - - - +
571D LEU* 4.2 14.2 + - - +
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Residues in contact with ASN 568 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
567C ALA* 5.1 8.3 - - - +
564D LEU* 3.0 18.9 + - - +
565D ARG* 3.0 15.3 + - - +
567D ALA* 1.3 79.8 - - - +
569D ASP* 1.3 60.8 + - - +
570D GLN 3.3 2.2 - - - -
571D LEU* 3.1 10.7 + - - +
572D GLU* 2.9 47.0 + - - +
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Residues in contact with ASP 569 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
565D ARG* 2.6 26.4 - - - +
566D GLN* 2.5 43.1 - - - +
568D ASN* 1.3 70.1 - - + +
570D GLN* 1.3 70.0 + - + +
572D GLU* 3.2 16.7 + - - +
573D LYS* 2.9 22.7 + - - +
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Residues in contact with GLN 570 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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571C LEU* 4.7 13.8 - - + +
566D GLN* 2.6 56.0 + - - +
567D ALA* 5.3 1.2 - - - +
568D ASN 3.3 0.4 - - - -
569D ASP* 1.3 84.5 + - + +
571D LEU* 1.3 67.1 + - - +
573D LYS* 3.1 9.4 + - - +
574D THR* 2.9 21.8 + - - -
622G ARG* 4.4 28.0 + - - +
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Residues in contact with LEU 571 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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567C ALA* 3.9 11.7 - - + +
570C GLN* 4.2 16.8 - - + +
571C LEU* 3.5 53.5 - - + +
574C THR* 4.2 14.8 - - - +
567D ALA 4.2 12.0 + - - +
568D ASN* 3.1 13.1 + - - +
570D GLN* 1.3 79.0 - - - +
572D GLU* 1.3 59.0 + - + +
574D THR* 2.8 10.5 + - + +
575D MET* 2.7 54.1 + - + +
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Residues in contact with GLU 572 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
568D ASN* 2.9 44.3 + - - +
569D ASP* 3.2 21.3 + - - +
571D LEU* 1.3 71.1 - - + +
573D LYS* 1.3 62.9 + - - +
575D MET* 3.1 24.3 - - + +
576D LYS* 3.0 17.5 + - - +
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Residues in contact with LYS 573 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
569D ASP 2.9 12.7 + - - +
570D GLN* 3.2 11.9 - - - +
572D GLU* 1.3 74.2 - - - +
574D THR* 1.3 58.4 + - - +
576D LYS* 2.7 48.7 + - + +
577D ASP* 3.1 5.7 + - - +
618G SER* 3.2 49.4 + - - -
621G LYS* 3.2 26.2 - - - +
622G ARG* 3.7 29.4 - - - +
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Residues in contact with THR 574 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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571C LEU* 5.3 6.1 - - + +
574C THR* 3.4 31.6 - - + -
575C MET* 4.4 12.6 - - + +
578C LYS* 3.4 23.5 + - + +
570D GLN 2.9 11.5 + - - -
571D LEU* 2.8 18.6 + - + +
573D LYS* 1.3 73.0 - - - +
575D MET* 1.3 63.5 + - - +
577D ASP* 3.1 9.8 + - - +
578D LYS* 3.0 23.0 + - - +
622G ARG* 3.8 13.8 + - - +
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Residues in contact with MET 575 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
570C GLN* 6.3 2.0 - - - -
574C THR* 4.7 12.6 - - + -
571D LEU* 2.7 37.9 + - + +
572D GLU* 3.1 46.2 - - + +
573D LYS 3.0 0.2 - - - -
574D THR* 1.3 75.4 - - - +
576D LYS* 1.3 66.3 + - - +
578D LYS* 4.0 5.1 - - + +
579D GLN* 2.9 24.2 + - + +
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Residues in contact with LYS 576 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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572D GLU 3.0 8.8 + - - +
573D LYS* 2.7 42.1 + - + +
575D MET* 1.3 69.7 - - - +
577D ASP* 1.3 63.8 + - - +
579D GLN* 2.7 27.3 + - - +
580D GLU* 3.0 39.0 + - - +
614G GLN* 4.5 9.0 - - - +
617G LEU* 5.5 1.6 - - - -
618G SER* 3.8 17.0 - - - +
621G LYS* 4.6 8.3 - - - +
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Residues in contact with ASP 577 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
578C LYS* 3.5 27.2 + - + +
573D LYS* 3.1 7.4 + - - +
574D THR* 3.1 10.3 + - - +
576D LYS* 1.3 85.0 - - - +
578D LYS* 1.3 68.6 + - - +
580D GLU* 3.5 3.6 + - - +
581D LEU* 3.2 17.7 + - - +
614G GLN* 5.2 2.3 + - - +
615G GLN* 3.7 37.1 + - - +
618G SER* 3.2 31.4 + - - -
619G GLN* 4.6 5.5 + - - +
622G ARG* 4.0 17.5 + - - -
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Residues in contact with LYS 578 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
573C LYS* 3.9 19.8 - - - +
574C THR* 4.1 21.1 - - + -
577C ASP* 4.1 16.3 - - + +
578C LYS* 3.6 33.8 - - + +
581C LEU* 5.4 10.1 - - + -
574D THR 3.0 13.5 + - - +
575D MET* 4.0 4.3 - - + +
577D ASP* 1.3 77.4 - - - +
579D GLN* 1.3 65.1 + - - +
581D LEU* 2.8 20.9 + - + +
582D GLU* 3.0 18.6 + - + +
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Residues in contact with GLN 579 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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240A LYS* 4.3 20.1 + - - +
243A ARG* 4.0 27.7 - - - +
575D MET 2.9 17.7 + - - +
576D LYS* 2.7 11.8 + - - +
578D LYS* 1.3 71.7 - - - +
580D GLU* 1.3 55.3 + - - +
582D GLU* 3.2 21.5 + - - +
583D ASP* 2.8 54.4 + - - +
586D LYS* 5.7 1.4 - - - +
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Residues in contact with GLU 580 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
239A GLN* 5.8 1.2 + - - -
243A ARG* 4.8 6.6 + - - -
576D LYS* 3.0 40.3 + - - +
577D ASP 3.8 6.5 - - - +
579D GLN* 1.3 75.7 - - - +
581D LEU* 1.3 70.6 + - - +
582D GLU 3.0 1.3 - - - -
583D ASP* 3.2 15.1 + - - +
584D PHE* 3.1 22.0 + - - +
611G GLU* 4.2 2.3 - - - +
614G GLN* 3.2 41.8 + - - +
615G GLN* 5.6 0.2 - - + -
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Residues in contact with LEU 581 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
578C LYS* 4.6 5.2 - - + +
581C LEU* 3.7 25.8 - - + -
582C GLU* 3.7 39.7 - - + +
585C ILE* 4.4 14.6 - - + -
577D ASP 3.2 3.8 + - - +
578D LYS* 2.8 14.7 + - + +
580D GLU* 1.3 81.0 - - - +
582D GLU* 1.3 64.0 + - - +
584D PHE* 3.1 5.1 - - + +
585D ILE* 3.0 22.2 + - - +
611G GLU* 4.2 17.3 - - + +
612G GLU* 6.3 0.9 - - - -
615G GLN* 3.2 39.3 - - + +
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Residues in contact with GLU 582 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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389A THR 5.3 0.9 - - - +
391A PRO* 3.3 35.5 - - - +
392A ARG* 5.2 0.9 + - - +
581C LEU* 5.5 7.5 - - - +
578D LYS* 3.0 18.4 + - + +
579D GLN* 3.2 28.7 + - - +
580D GLU 3.0 0.8 - - - -
581D LEU* 1.3 74.8 - - - +
583D ASP* 1.3 72.1 + - - +
584D PHE 2.9 0.7 + - - -
585D ILE* 3.2 12.9 + - - +
586D LYS* 3.1 35.5 + - - +
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Residues in contact with ASP 583 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
243A ARG* 2.8 55.5 + - + +
246A ARG* 5.0 19.2 + - + +
327A ASN* 4.6 5.7 + - - -
579D GLN* 2.8 23.6 + - - +
580D GLU* 3.2 14.2 + - - +
582D GLU* 1.3 77.7 - - - +
584D PHE* 1.3 64.7 + - - +
586D LYS* 3.1 19.3 + - - +
587D GLN* 3.1 15.2 + - - +
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Residues in contact with PHE 584 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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585C ILE* 3.7 24.9 - - + -
589C SER* 5.7 2.9 - - - -
580D GLU 3.1 10.2 + - - +
581D LEU* 3.1 12.3 - - - +
583D ASP* 1.3 77.9 - - - +
585D ILE* 1.3 70.8 + - + +
587D GLN* 2.9 24.3 + - + +
588D SER* 3.0 34.8 + - - -
607G GLU* 4.9 13.9 - - + -
608G ILE* 5.1 12.8 - - + -
611G GLU* 2.9 52.5 - - + +
609H LEU* 5.9 2.9 - - + -
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Residues in contact with ILE 585 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
392A ARG* 4.8 22.4 - - + +
395A MET* 4.4 31.6 - - + -
581C LEU* 5.1 8.1 - - + -
584C PHE* 4.9 4.3 - - + -
585C ILE* 3.3 43.3 - - + -
589C SER* 4.7 8.1 - - - +
581D LEU* 3.0 9.2 + - + +
582D GLU* 3.5 17.7 - - - +
584D PHE* 1.3 84.6 - - + +
586D LYS* 1.3 68.3 + - - +
588D SER* 4.6 9.2 - - - +
589D SER* 2.8 27.5 + - - +
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Residues in contact with LYS 586 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
243A ARG* 4.9 18.8 + - - +
244A ALA* 6.0 3.0 - - - +
246A ARG* 5.7 8.7 - - + -
389A THR* 4.2 40.8 + - + +
390A SER 5.0 9.4 - - - +
391A PRO* 5.3 6.1 - - + -
392A ARG 5.5 4.0 - - - +
394A GLN* 4.5 14.8 - - + +
579D GLN* 5.7 0.8 - - - +
582D GLU* 3.1 35.2 + - - +
583D ASP* 3.1 14.3 + - - +
585D ILE* 1.3 78.8 - - - +
587D GLN* 1.3 50.5 + - + +
589D SER* 2.9 9.7 - - - -
590D GLU* 2.8 40.2 + - + +
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Residues in contact with GLN 587 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
246A ARG* 3.2 51.3 + - + +
325A LYS* 4.0 8.8 + - - -
583D ASP 3.1 8.4 + - - +
584D PHE* 2.9 18.6 + - + +
586D LYS* 1.3 75.6 - - - +
588D SER* 1.3 59.3 + - - +
589D SER 2.9 1.3 - - - -
590D GLU* 2.9 23.9 + - + +
591D ASP* 2.9 17.4 + - + +
602H ARG* 6.2 2.9 - - + -
605H ALA* 5.4 9.1 - - - +
609H LEU* 5.9 5.1 - - - +
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Residues in contact with SER 588 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
395A MET* 5.5 0.2 - - - +
589C SER* 3.7 5.2 + - - -
584D PHE* 3.0 39.5 + - - -
585D ILE* 4.5 8.9 - - - +
587D GLN* 1.3 73.9 - - - +
589D SER* 1.3 54.1 + - - +
591D ASP* 3.7 6.5 - - - +
592D SER* 2.5 38.0 + - - -
604G GLN* 2.6 37.8 + - - +
607G GLU* 5.9 1.0 - - - -
602H ARG* 4.6 12.9 + - - +
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Residues in contact with SER 589 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
392A ARG* 6.5 0.2 - - - -
394A GLN* 2.7 38.0 - - - +
395A MET* 2.9 24.1 + - - -
398A ASN* 2.9 22.3 + - - +
585D ILE* 2.8 25.0 + - - +
586D LYS* 2.9 8.3 - - - -
588D SER* 1.3 80.0 - - - +
590D GLU* 1.3 53.8 + - - -
592D SER* 3.9 4.5 - - - -
593D SER* 2.9 14.6 + - - -
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Residues in contact with GLU 590 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
246A ARG* 3.7 27.7 - - + +
247A TRP* 3.9 18.5 - - - +
384A TYR* 5.5 5.2 - - - +
388A GLN* 5.6 4.3 - - - +
394A GLN* 4.4 19.4 + - + +
586D LYS* 2.8 27.6 + - + +
587D GLN* 2.9 13.2 + - + +
589D SER* 1.3 73.5 - - - +
591D ASP* 1.3 58.2 + - - +
593D SER* 2.9 26.2 - - - -
594D HIS* 2.9 28.9 + - - +
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Residues in contact with ASP 591 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
587D GLN* 2.9 15.6 + - + +
588D SER 3.7 2.5 - - - +
590D GLU* 1.3 73.1 - - - +
592D SER* 1.3 71.3 + - - +
593D SER 2.9 1.1 + - - -
594D HIS* 3.2 7.5 + - - +
595D GLN* 3.0 20.4 + - - +
598H ALA* 3.4 32.2 - - - +
601H LEU* 4.6 5.2 - - - +
602H ARG* 3.2 52.8 + - + +
----------------------------------------------------------
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Residues in contact with SER 592 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
395A MET* 4.0 10.5 - - - +
398A ASN* 3.9 12.6 - - - -
592C SER* 4.6 4.0 - - - -
588D SER 2.5 23.4 + - - -
589D SER* 3.6 6.9 - - - -
591D ASP* 1.3 74.8 - - - +
593D SER* 1.3 71.6 + - - +
595D GLN* 2.7 23.6 + - - +
596D ILE* 2.9 15.2 + - - +
604G GLN* 3.2 23.6 + - - -
602H ARG* 4.5 2.2 - - - +
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Residues in contact with SER 593 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
394A GLN* 5.2 7.0 - - - -
398A ASN* 3.6 23.6 - - - +
589D SER 2.9 14.5 + - - -
590D GLU* 2.9 15.2 + - - -
592D SER* 1.3 74.5 - - - +
594D HIS* 1.3 71.1 + - - +
596D ILE* 2.6 34.9 + - - +
597D SER* 3.0 9.0 + - - -
----------------------------------------------------------
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Residues in contact with HIS 594 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
247A TRP* 5.4 9.6 - - + -
384A TYR* 4.7 23.1 + + - -
590D GLU* 2.9 28.2 + - - +
591D ASP* 3.2 6.5 + - - +
593D SER* 1.3 89.3 + - - +
595D GLN* 1.3 63.3 + - - +
597D SER* 2.9 21.9 + - - -
598D ALA* 3.0 14.1 + - - +
598H ALA* 5.6 9.4 - - + -
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Residues in contact with GLN 595 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
596C ILE* 5.3 14.0 - - + +
591D ASP* 3.0 10.1 + - - +
592D SER* 2.7 18.0 + - - +
594D HIS* 1.3 71.0 - - - +
596D ILE* 1.3 64.6 + - + +
598D ALA* 3.0 6.4 + - - -
599D LEU* 2.9 38.0 + - + +
600G VAL* 4.4 15.3 - - - +
595H GLN* 4.8 14.9 + - + +
598H ALA* 5.6 5.2 - - + -
599H LEU* 3.1 35.2 - - + +
602H ARG* 2.4 34.0 + - - -
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Residues in contact with ILE 596 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
398A ASN* 2.9 42.0 - - + +
401A LEU* 4.5 19.4 - - + +
402A LEU* 4.7 21.5 - - + +
405A LEU* 3.8 16.4 - - + +
596C ILE* 4.5 21.1 - - + -
592D SER* 2.9 14.3 + - - +
593D SER* 2.6 29.4 + - - +
595D GLN* 1.3 69.9 - - + +
597D SER* 1.3 73.9 + - - +
599D LEU* 4.3 5.4 - - + -
600D VAL* 3.0 22.0 + - - +
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Residues in contact with SER 597 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
401A LEU* 6.0 0.9 - - - -
593D SER* 3.0 7.6 + - - -
594D HIS* 2.9 32.6 + - - -
596D ILE* 1.3 82.1 - - - +
598D ALA* 1.3 56.3 + - - +
600D VAL* 2.8 31.2 - - - +
601D LEU* 2.8 19.1 - - - +
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Residues in contact with ALA 598 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
594D HIS 3.0 12.7 + - - +
595D GLN* 3.0 11.0 + - - +
597D SER* 1.3 77.6 + - - +
599D LEU* 1.3 60.9 + - + +
601D LEU* 3.2 19.5 - - + +
602D ARG* 3.1 31.4 + - - +
591H ASP* 5.5 3.8 - - - +
594H HIS* 6.1 6.3 - - + -
595H GLN* 4.9 15.9 - - + +
----------------------------------------------------------
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Residues in contact with LEU 599 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
405A LEU* 4.4 9.0 - - + -
409A GLN* 6.0 0.4 - - - +
596C ILE* 5.1 7.2 - - + -
599C LEU* 4.0 27.8 - - + -
600C VAL* 4.2 21.8 - - + -
603C ALA* 5.3 3.6 - - + -
595D GLN* 2.9 42.5 + - + +
596D ILE* 3.9 8.7 - - + +
598D ALA* 1.3 74.8 - - + +
600D VAL* 1.3 70.6 + - - +
601D LEU 3.0 1.1 - - - -
602D ARG* 3.1 18.6 + - - +
603D ALA* 3.0 19.8 + - - +
595H GLN* 3.5 25.8 - - - +
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Residues in contact with VAL 600 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
401A LEU* 5.3 7.4 - - + -
405A LEU* 3.5 39.4 - - + +
408A ARG* 4.9 13.9 - - - +
596D ILE 3.0 10.9 + - - +
597D SER* 2.8 28.3 - - - +
599D LEU* 1.3 74.8 - - - +
601D LEU* 1.3 64.1 - - + +
603D ALA* 2.7 19.8 + - + +
604D GLN* 2.3 32.2 + - - +
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Residues in contact with LEU 601 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
597D SER* 2.8 26.9 + - - +
598D ALA* 3.2 22.9 - - + +
599D LEU 3.0 0.2 - - - -
600D VAL* 1.3 87.0 - - + +
602D ARG* 1.3 57.8 + - + +
604D GLN* 2.4 33.5 + - - +
605D ALA* 3.9 8.1 + - - +
----------------------------------------------------------
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Residues in contact with ARG 602 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
600C VAL* 3.7 18.4 - - - +
603C ALA* 3.9 3.3 - - - +
604C GLN* 3.4 26.6 - - - +
607C GLU* 2.6 47.8 + - - +
598D ALA* 3.1 18.9 + - - +
599D LEU* 3.1 18.5 + - + +
600D VAL 3.1 0.6 - - - -
601D LEU* 1.3 79.5 - - + +
603D ALA* 1.3 69.9 + - - +
605D ALA* 3.0 16.4 + - - +
606D SER* 3.1 14.1 + - - -
588H SER* 4.8 1.4 + - - -
591H ASP* 3.3 60.1 + - + +
592H SER* 5.2 1.0 - - - +
595H GLN* 5.0 6.6 + - - -
----------------------------------------------------------
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Residues in contact with ALA 603 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
405A LEU* 5.5 7.0 - - + +
408A ARG* 5.2 15.7 - - + +
409A GLN* 3.2 31.6 - - + +
412A ILE* 4.4 4.2 - - + +
607C GLU* 6.2 0.9 - - - -
599D LEU 3.0 11.4 + - - +
600D VAL* 2.7 17.7 + - + +
602D ARG* 1.3 70.8 - - - +
604D GLN* 1.3 60.4 + - - +
606D SER* 2.9 24.6 + - - -
607D GLU* 3.0 9.1 + - - +
----------------------------------------------------------
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Residues in contact with GLN 604 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
408A ARG* 3.1 41.2 - - - +
600D VAL* 2.3 33.5 + - + +
601D LEU* 2.4 41.4 + - - +
603D ALA* 1.3 75.4 - - - +
605D ALA* 1.3 56.8 + - - +
607D GLU* 3.1 8.3 + - - +
608D ILE* 3.0 31.4 + - + +
262E PRO* 5.7 11.6 - - + +
----------------------------------------------------------
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Residues in contact with ALA 605 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
601D LEU 4.0 8.7 - - - +
602D ARG* 3.0 12.2 + - - +
604D GLN* 1.3 78.7 + - - +
606D SER* 1.3 61.4 + - - +
607D GLU 2.9 1.3 - - - -
608D ILE* 2.6 44.0 + - + +
609D LEU* 3.2 6.6 + - - +
587H GLN* 5.9 4.7 - - - +
----------------------------------------------------------
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Residues in contact with SER 606 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
409A GLN* 5.1 0.2 - - - -
412A ILE* 4.4 13.8 - - - +
607C GLU* 3.1 44.8 + - - +
610C LEU* 3.8 19.7 - - - +
602D ARG 3.1 7.5 + - - -
603D ALA* 2.9 10.8 + - - -
605D ALA* 1.3 76.7 - - - +
607D GLU* 1.3 61.6 + - - +
609D LEU* 4.0 7.3 + - - +
610D LEU* 3.5 18.2 + - - +
584H PHE* 6.2 0.2 - - - -
----------------------------------------------------------
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Residues in contact with GLU 607 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
408A ARG* 2.9 30.3 + - - +
411A ARG* 5.4 8.3 + - - +
412A ILE* 4.0 25.2 - - + +
603D ALA 3.0 6.1 + - - -
604D GLN* 3.2 17.8 - - - +
605D ALA 2.9 0.8 - - - -
606D SER* 1.3 76.4 - - - +
608D ILE* 1.3 62.5 + - - +
610D LEU* 2.8 24.8 + - + +
611D GLU* 2.8 31.1 + - - +
266E ASP* 5.3 2.1 - - - +
----------------------------------------------------------
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Residues in contact with ILE 608 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
604D GLN* 3.0 21.5 + - + +
605D ALA* 2.6 30.1 + - + +
607D GLU* 1.3 73.1 - - - +
609D LEU* 1.3 85.1 + - + +
611D GLU* 2.9 29.0 - - - +
612D GLU* 2.9 28.3 + - - +
265E SER 5.8 0.7 - - - +
266E ASP* 3.9 21.8 - - - +
269E VAL* 3.4 31.6 - - + -
----------------------------------------------------------
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Residues in contact with LEU 609 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
610C LEU* 3.4 40.4 - - + -
614C GLN* 4.4 12.6 - - + -
605D ALA 3.2 6.7 + - - +
606D SER* 4.2 10.1 - - - +
608D ILE* 1.3 89.2 - - + +
610D LEU* 1.3 60.8 + - + +
612D GLU* 3.2 20.8 - - - +
613D LEU* 2.8 60.4 + - + +
584H PHE* 4.7 14.8 - - + -
587H GLN* 5.5 5.4 - - - +
----------------------------------------------------------
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Residues in contact with LEU 610 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
412A ILE* 5.1 10.8 - - + +
415A GLU* 3.7 32.3 - - + +
416A ALA* 3.9 28.3 - - + +
419A LEU* 4.7 13.0 - - + +
610C LEU* 4.8 17.3 - - + -
606D SER 3.5 11.4 + - - +
607D GLU* 2.8 19.2 + - + +
609D LEU* 1.3 79.7 - - + +
611D GLU* 1.3 65.8 + - - +
612D GLU 3.1 0.4 - - - -
613D LEU* 4.1 6.9 - - + +
614D GLN* 3.0 27.2 + - + +
----------------------------------------------------------
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Residues in contact with GLU 611 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
607D GLU* 2.8 40.3 + - + +
608D ILE* 2.9 32.9 - - - +
610D LEU* 1.3 76.8 - - - +
612D GLU* 1.3 67.4 + - - +
614D GLN* 3.1 8.8 + - - +
615D GLN* 3.0 30.6 + - + +
266E ASP* 4.8 10.0 - - - +
269E VAL* 4.7 7.4 - - - +
----------------------------------------------------------
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Residues in contact with GLU 612 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
608D ILE* 2.9 23.0 + - - +
609D LEU* 3.2 23.2 - - - +
611D GLU* 1.3 79.4 - - - +
613D LEU* 1.3 73.6 + - + +
615D GLN* 4.0 3.4 - - - +
616D GLY* 3.0 17.7 + - - -
269E VAL* 3.3 31.0 - - + +
272E ILE* 4.5 10.6 - - - +
273E THR* 3.8 24.3 + - + +
----------------------------------------------------------
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Residues in contact with LEU 613 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
419A LEU* 4.9 11.2 - - + -
610C LEU* 5.0 2.5 - - + +
613C LEU* 4.5 12.1 - - + +
614C GLN* 4.1 32.1 - - + +
617C LEU* 5.0 22.9 - - + +
609D LEU* 2.8 45.5 + - + +
610D LEU* 4.2 7.6 - - + +
612D GLU* 1.3 89.5 - - + +
614D GLN* 1.3 59.0 + - - +
616D GLY* 2.4 25.8 + - - +
617D LEU* 2.9 12.4 + - - +
----------------------------------------------------------
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Residues in contact with GLN 614 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
415A GLU* 3.3 36.9 + - - +
418A LYS* 3.4 26.3 - - - +
419A LEU* 4.2 21.4 - - + +
422A ASP* 5.4 2.0 + - - +
610D LEU* 3.0 25.2 + - + +
611D GLU* 3.1 8.7 + - + +
613D LEU* 1.3 74.0 - - - +
615D GLN* 1.3 62.3 + - - +
617D LEU* 3.5 4.1 + - - +
618D SER* 3.1 26.2 + - - +
----------------------------------------------------------
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Residues in contact with GLN 615 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
611D GLU* 3.0 17.6 + - + +
612D GLU* 4.2 2.9 - - - +
614D GLN* 1.3 79.0 - - - +
616D GLY* 1.3 57.6 + - - +
618D SER* 3.1 11.9 + - - -
619D GLN* 2.9 36.2 + - + +
270E LYS* 5.4 17.5 - - - +
----------------------------------------------------------
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Residues in contact with GLY 616 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
617C LEU* 4.6 11.5 - - - +
612D GLU 3.0 13.4 + - - -
613D LEU* 2.4 20.8 + - - -
615D GLN* 1.3 70.8 - - - +
617D LEU* 1.3 55.0 + - - -
619D GLN* 3.2 21.2 - - - +
620D ALA* 3.1 24.4 + - - +
273E THR* 6.1 3.4 - - - -
----------------------------------------------------------
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Residues in contact with LEU 617 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
419A LEU* 5.6 9.6 - - + -
422A ASP* 4.4 9.9 - - - +
423A LEU* 3.6 44.0 - - + +
426A TRP* 3.4 47.6 - - + -
617C LEU* 4.5 11.3 - - + +
613D LEU 2.9 8.7 + - - +
614D GLN* 4.0 7.0 - - - +
616D GLY* 1.3 74.9 - - - +
618D SER* 1.3 60.5 + - - +
619D GLN 2.9 1.6 - - - -
620D ALA* 2.6 24.0 + - + +
621D LYS* 3.0 21.4 + - + +
----------------------------------------------------------
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Residues in contact with SER 618 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
614D GLN* 3.1 21.6 + - - +
615D GLN* 3.1 16.6 + - - -
617D LEU* 1.3 78.0 - - - +
619D GLN* 1.3 57.6 + - - +
621D LYS* 2.9 42.0 + - - +
622D ARG* 3.9 8.8 + - - +
----------------------------------------------------------
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Residues in contact with GLN 619 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
615D GLN* 2.9 16.0 + - + +
616D GLY* 3.2 23.8 - - - +
618D SER* 1.3 73.9 - - - +
620D ALA* 1.3 64.2 + - + +
621D LYS 3.1 2.0 - - - -
622D ARG* 2.8 33.2 + - + +
623D ASP* 2.9 16.5 + - - +
270E LYS* 5.5 5.5 - - - +
273E THR* 5.1 12.4 - - - +
277E GLU* 2.9 51.4 + - - +
280E SER* 4.7 2.8 + - - -
----------------------------------------------------------
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Residues in contact with ALA 620 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
426A TRP* 3.0 34.1 - - + -
617C LEU* 6.0 2.9 - - + -
621C LYS* 5.6 8.3 - - + -
616D GLY 3.1 12.9 + - - +
617D LEU* 2.6 14.7 + - + +
619D GLN* 1.3 79.2 - - + +
621D LYS* 1.3 55.6 + - - +
622D ARG 3.2 0.2 - - - -
623D ASP* 3.5 14.9 - - + +
624D VAL* 3.0 20.3 + - - +
----------------------------------------------------------
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Residues in contact with LYS 621 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
426A TRP* 3.4 37.2 - - + +
617D LEU* 3.0 19.9 + - + +
618D SER* 2.9 41.5 + - - +
619D GLN 3.1 0.2 - - - -
620D ALA* 1.3 74.0 - - - +
622D ARG* 1.3 59.4 + - - +
624D VAL* 3.1 0.6 - - + +
625D GLN* 2.9 38.7 + - + +
----------------------------------------------------------
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Residues in contact with ARG 622 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
618D SER 3.9 4.3 + - - +
619D GLN* 2.8 22.2 + - + +
621D LYS* 1.3 75.6 - - - +
623D ASP* 1.3 69.9 + - - +
625D GLN* 3.8 5.6 - - - +
626D GLU* 2.9 43.4 + - - +
277E GLU* 5.1 6.3 - - - +
----------------------------------------------------------
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Residues in contact with ASP 623 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
619D GLN* 2.9 27.1 + - - +
620D ALA* 3.5 14.1 - - + +
621D LYS 3.2 0.2 - - - -
622D ARG* 1.3 81.6 - - - +
624D VAL* 1.3 58.5 + - + +
626D GLU* 3.1 25.8 - - - +
627D GLN* 2.9 29.0 + - + +
277E GLU* 3.4 19.8 - - - +
280E SER* 3.7 31.7 + - - +
281E LYS* 4.6 2.9 + - - +
----------------------------------------------------------
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Residues in contact with VAL 624 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
426A TRP* 3.3 22.4 - - + +
430A ILE* 3.7 19.5 - - + -
624C VAL* 3.6 34.1 - - + +
625C GLN* 5.9 0.9 - - - -
628C MET* 4.2 12.2 - - + +
620D ALA 3.0 14.3 + - - +
621D LYS* 3.1 18.8 - - - +
623D ASP* 1.3 74.9 - - - +
625D GLN* 1.3 69.0 + - - +
627D GLN* 4.5 4.0 - - - +
628D MET* 2.9 34.0 + - - +
----------------------------------------------------------
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Residues in contact with GLN 625 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
426A TRP* 4.9 1.4 + - - -
430A ILE* 4.7 4.8 - - - +
621D LYS* 2.9 32.5 + - + +
622D ARG* 4.0 6.7 - - - +
623D ASP 3.3 0.2 - - - -
624D VAL* 1.3 89.6 + - - +
626D GLU* 1.3 58.0 + - - +
628D MET* 3.5 29.9 - - - +
629D ALA* 3.0 30.0 + - - +
----------------------------------------------------------
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Residues in contact with GLU 626 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
622D ARG* 2.9 34.5 + - - +
623D ASP* 3.1 36.8 - - - +
625D GLN* 1.3 77.0 - - - +
627D GLN* 1.3 74.4 + - + +
629D ALA* 3.4 6.7 + - - +
630D VAL* 3.0 26.9 + - + +
280E SER 4.9 1.9 - - - +
281E LYS* 3.8 37.7 - - - +
286E ASP* 5.5 0.9 - - - +
----------------------------------------------------------
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Residues in contact with GLN 627 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
625C GLN* 3.7 27.6 + - - +
628C MET* 3.8 25.6 - - - +
623D ASP* 2.9 14.5 + - + +
624D VAL* 4.8 0.7 - - - -
626D GLU* 1.3 92.9 + - + +
628D MET* 1.3 60.1 + - - +
629D ALA 3.1 1.3 - - - -
630D VAL* 2.9 25.5 + - + +
631D LEU* 2.9 15.9 + - - +
220E TYR* 6.2 0.6 - - - -
280E SER 4.5 11.3 + - - -
281E LYS* 6.0 1.5 - - + +
282E ARG* 3.0 52.6 + - + +
----------------------------------------------------------
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Residues in contact with MET 628 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
430A ILE* 5.0 9.2 - - - -
434A VAL* 5.4 14.1 - - + -
628C MET* 3.5 26.1 - - + -
631C LEU* 5.4 2.5 - - + -
624D VAL 2.9 28.1 + - - +
625D GLN* 3.5 26.2 - - - +
627D GLN* 1.3 69.3 - - - +
629D ALA* 1.3 66.0 + - - +
631D LEU* 3.8 3.8 - - - +
632D MET* 3.4 57.2 + - + +
137E ARG* 3.7 4.0 + - - -
----------------------------------------------------------
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Residues in contact with ALA 629 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
625D GLN 3.0 22.3 + - - +
626D GLU* 3.5 7.9 - - - +
627D GLN 3.1 0.2 - - - -
628D MET* 1.3 79.6 - - - +
630D VAL* 1.3 55.2 + - - +
137E ARG* 2.5 43.9 + - - +
138E VAL* 5.6 1.2 - - - +
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Residues in contact with VAL 630 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
626D GLU* 3.0 14.2 + - + +
627D GLN* 2.9 23.1 + - + +
629D ALA* 1.3 80.4 - - - +
631D LEU* 1.3 80.3 + - + +
134E GLU* 3.4 20.8 - - - +
137E ARG* 4.6 0.9 + - - +
138E VAL* 4.2 14.5 - - + +
213E LYS* 6.1 3.6 - - + -
217E THR* 3.7 35.7 - - + +
281E LYS* 6.5 0.7 - - - -
282E ARG* 4.4 13.0 - - - +
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Residues in contact with LEU 631 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
628C MET* 3.8 29.6 - - + -
631C LEU* 3.5 29.6 - - + -
632C MET* 3.7 23.6 - - + -
627D GLN* 2.9 26.0 + - - +
628D MET* 3.7 1.7 + - - +
629D ALA 3.4 0.2 - - - -
630D VAL* 1.3 94.9 - - + +
632D MET* 1.3 65.7 + - - +
134E GLU* 2.3 63.1 + - + +
282E ARG* 4.3 3.6 - - - +
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Residues in contact with MET 632 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
437A ILE* 6.5 0.9 - - + -
631C LEU* 3.7 30.1 - - + -
628D MET* 3.4 37.6 + - + +
631D LEU* 1.3 81.3 - - - +
136E ASP* 2.8 37.6 - - - +
137E ARG* 3.0 44.3 - - - +
140E LYS* 5.7 0.3 + - - -
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
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Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il