Contacts of the helix formed by residues 31 - 69 (chain C) in PDB entry 4RQE
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with GLY 31 (chain C).
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Specific contacts
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Residue Dist Surf HB Arom Phob DC
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30C PRO* 1.3 76.5 - - - +
32C LEU* 1.3 59.0 + - - +
33C VAL* 3.1 3.9 - - - +
34C ASP* 3.2 24.9 + - - +
35C GLN* 2.9 39.2 + - - +
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Residues in contact with LEU 32 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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23C GLN* 5.5 7.4 - - - +
28C LYS* 6.2 2.0 - - + -
29C ASP 3.9 19.5 - - - +
30C PRO* 3.1 3.3 - - + +
31C GLY* 1.3 76.3 - - - +
33C VAL* 1.3 60.7 + - + +
35C GLN* 3.9 25.0 - - - +
36C LEU* 3.0 26.9 + - - +
131C ASN* 3.9 25.9 + - + +
134C GLU* 4.5 22.7 - - + +
135C ILE* 4.8 7.7 - - + +
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Residues in contact with VAL 33 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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8C PHE* 4.1 17.9 - - + -
16C PRO* 4.1 20.9 - - + +
19C ILE* 4.0 15.0 - - + -
20C ARG* 4.0 31.6 - - + +
23C GLN* 3.9 28.9 - - + -
30C PRO* 5.1 1.3 - - + -
31C GLY 4.8 4.9 - - - +
32C LEU* 1.3 77.6 - - + +
34C ASP* 1.3 60.9 + - - +
36C LEU* 3.2 7.5 + - - +
37C VAL* 2.9 33.9 + - + +
135C ILE* 5.1 8.1 - - + -
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Residues in contact with ASP 34 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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20C ARG* 2.5 43.9 + - - +
30C PRO* 5.2 0.2 - - - +
31C GLY* 3.2 27.0 + - - +
33C VAL* 1.3 75.3 - - - +
35C GLN* 1.3 59.5 + - + +
37C VAL* 3.3 8.0 + - - +
38C LYS* 2.9 28.9 + - - +
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Residues in contact with GLN 35 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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31C GLY* 2.9 24.9 + - - +
32C LEU* 3.9 16.1 - - - +
34C ASP* 1.3 74.3 - - + +
36C LEU* 1.3 61.3 + - - +
38C LYS* 3.9 6.1 - - - +
39C ALA* 2.9 32.4 + - - +
131C ASN* 3.3 28.6 + - - +
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Residues in contact with LEU 36 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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5C LEU* 4.5 13.5 - - + -
8C PHE* 3.8 46.2 - - + -
32C LEU 3.0 14.5 + - - +
33C VAL* 3.2 13.7 + - - +
35C GLN* 1.3 78.3 - - - +
37C VAL* 1.3 57.9 + - - +
39C ALA* 3.8 2.7 - - - +
40C ASP* 2.8 36.8 + - + +
128C ARG* 3.1 37.8 - - + +
131C ASN* 3.7 9.6 - - + +
132C LEU* 3.7 19.5 - - + +
135C ILE* 4.3 4.0 - - + -
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Residues in contact with VAL 37 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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8C PHE* 4.3 18.8 - - + +
16C PRO* 4.3 26.9 - - + -
20C ARG* 5.5 5.4 - - - +
33C VAL* 2.9 20.8 + - + +
34C ASP* 3.3 9.4 + - - +
36C LEU* 1.3 77.7 - - - +
38C LYS* 1.3 52.5 + - - +
40C ASP* 3.3 6.9 + - - +
41C SER* 2.6 40.6 + - - +
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Residues in contact with LYS 38 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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34C ASP 2.9 16.3 + - - +
35C GLN* 3.9 7.2 - - - +
37C VAL* 1.3 74.9 - - - +
39C ALA* 1.3 60.7 + - - +
41C SER* 3.1 7.4 + - - -
42C GLU* 2.9 33.5 + - + +
45C ARG* 4.8 9.4 + - - +
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Residues in contact with ALA 39 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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35C GLN 2.9 19.3 + - - +
36C LEU 3.9 2.9 - - - +
38C LYS* 1.3 77.3 - - - +
40C ASP* 1.3 56.7 + - - +
42C GLU* 3.6 7.8 - - - +
43C TRP* 2.9 30.0 + - - +
124C LEU* 4.6 10.6 - - - +
127C GLU* 4.8 9.2 - - + +
128C ARG* 4.4 27.8 - - + +
131C ASN* 5.5 1.3 - - - +
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Residues in contact with ASP 40 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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5C LEU* 4.8 8.7 - - - +
8C PHE* 4.6 8.4 - - + +
9C ARG* 2.4 55.2 + - - +
36C LEU* 2.8 29.3 + - + +
37C VAL* 3.3 10.0 - - - +
38C LYS 3.1 0.2 - - - -
39C ALA* 1.3 76.1 - - - +
41C SER* 1.3 59.2 + - - +
43C TRP* 2.8 25.3 + - - +
44C ARG* 2.9 17.1 + - - +
128C ARG* 5.1 5.7 - - + +
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Residues in contact with SER 41 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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37C VAL* 2.6 28.9 + - - +
38C LYS* 3.1 13.9 + - - +
40C ASP* 1.3 75.2 - - - +
42C GLU* 1.3 54.8 + - - +
44C ARG* 3.2 14.0 + - - +
45C ARG* 3.0 42.8 + - - +
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Residues in contact with GLU 42 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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