Contacts of the helix formed by residues 31 - 72 (chain A) in PDB entry 4RQE
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with GLY 31 (chain A).
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Specific contacts
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Residue Dist Surf HB Arom Phob DC
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30A PRO* 1.3 77.4 - - - +
32A LEU* 1.3 59.0 + - - +
33A VAL* 3.1 3.9 - - - +
34A ASP* 3.1 23.9 + - - +
35A GLN* 2.9 39.6 + - - +
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Residues in contact with LEU 32 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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23A GLN* 5.5 7.4 - - - +
28A LYS* 6.2 2.2 - - + -
29A ASP 3.9 19.5 - - - +
30A PRO* 3.2 2.2 + - + +
31A GLY* 1.3 75.4 - - - +
33A VAL* 1.3 60.0 + - + +
35A GLN* 3.9 25.4 - - - +
36A LEU* 2.9 27.9 + - - +
131A ASN* 4.0 27.8 + - + +
134A GLU* 4.3 25.1 - - + +
135A ILE* 4.8 7.9 - - + +
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Residues in contact with VAL 33 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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8A PHE* 4.1 17.9 - - + -
16A PRO* 4.1 20.9 - - + +
19A ILE* 4.0 14.1 - - + -
20A ARG* 4.0 31.2 - - + +
23A GLN* 3.9 29.2 - - + -
30A PRO* 5.1 1.3 - - + -
31A GLY 4.8 5.6 - - - +
32A LEU* 1.3 78.4 - - + +
34A ASP* 1.3 61.3 + - - +
36A LEU* 3.2 7.7 + - - +
37A VAL* 2.8 34.1 + - + +
135A ILE* 5.0 7.6 - - + -
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Residues in contact with ASP 34 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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20A ARG* 2.5 42.4 + - - +
30A PRO* 5.2 0.5 - - - +
31A GLY* 3.1 27.3 + - - +
33A VAL* 1.3 75.0 - - - +
35A GLN* 1.3 59.6 + - + +
37A VAL* 3.3 9.0 + - - +
38A LYS* 2.9 28.9 + - - +
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Residues in contact with GLN 35 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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31A GLY* 2.9 23.8 + - - +
32A LEU* 3.9 15.8 - - - +
34A ASP* 1.3 73.9 - - + +
36A LEU* 1.3 60.0 + - - +
38A LYS* 3.9 6.4 - - - +
39A ALA* 2.9 32.7 + - - +
131A ASN* 3.3 30.4 + - - +
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Residues in contact with LEU 36 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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5A LEU* 4.4 13.5 - - + -
8A PHE* 3.8 46.7 - - + -
32A LEU 2.9 17.7 + - - +
33A VAL* 3.2 10.3 - - - +
35A GLN* 1.3 77.2 - - - +
37A VAL* 1.3 57.2 + - - +
39A ALA* 3.8 2.3 - - - +
40A ASP* 2.8 36.7 + - + +
128A ARG* 3.2 39.6 - - + +
131A ASN* 3.7 15.9 - - + +
132A LEU* 3.7 12.1 - - + +
135A ILE* 4.3 4.0 - - + -
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Residues in contact with VAL 37 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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8A PHE* 4.3 20.0 - - + +
16A PRO* 4.3 26.9 - - + -
20A ARG* 5.5 4.7 - - - +
33A VAL* 2.8 21.2 + - + +
34A ASP* 3.3 11.4 + - - +
36A LEU* 1.3 77.0 - - - +
38A LYS* 1.3 52.0 + - - +
40A ASP* 3.3 6.6 + - - +
41A SER* 2.6 39.7 + - - +
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Residues in contact with LYS 38 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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34A ASP 2.9 16.9 + - - +
35A GLN* 3.9 6.7 - - - +
37A VAL* 1.3 75.0 - - - +
39A ALA* 1.3 60.0 + - - +
41A SER* 3.1 7.6 + - - +
42A GLU* 2.9 32.4 + - + +
45A ARG* 4.8 9.1 + - - +
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Residues in contact with ALA 39 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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35A GLN 2.9 17.8 + - - +
36A LEU* 3.9 3.6 - - - +
38A LYS* 1.3 77.7 - - - +
40A ASP* 1.3 57.9 + - - +
42A GLU* 3.5 7.9 + - - +
43A TRP* 2.9 30.1 + - - +
124A LEU* 4.8 10.2 - - + +
127A GLU* 4.9 8.7 - - + +
128A ARG* 4.5 26.6 - - + +
131A ASN* 5.5 1.6 - - - +
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Residues in contact with ASP 40 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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5A LEU* 4.9 9.1 - - - +
8A PHE* 4.5 8.8 - - + +
9A ARG* 2.4 55.3 + - - +
36A LEU* 2.8 28.7 + - + +
37A VAL* 3.3 9.7 - - - +
38A LYS 3.1 0.2 - - - -
39A ALA* 1.3 76.5 - - - +
41A SER* 1.3 56.7 + - - +
43A TRP* 2.8 24.3 + - - +
44A ARG* 2.9 18.8 + - - +
128A ARG* 5.4 4.0 - - + +
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Residues in contact with SER 41 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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37A VAL* 2.6 27.8 + - - +
38A LYS* 3.1 13.3 + - - -
40A ASP* 1.3 76.1 - - - +
42A GLU* 1.3 55.3 + - - +
44A ARG* 3.2 13.4 + - - +
45A ARG* 3.0 42.3 + - - +
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Residues in contact with GLU 42 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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