Contacts of the strand formed by residues 1147 - 1157 (chain C) in PDB entry 4UVL
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ALA1147 (chain C).
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Specific contacts
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Residue Dist Surf HB Arom Phob DC
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1009C TYR* 3.7 9.1 - - - +
1044C PHE* 3.6 22.3 + - + -
1061C PHE* 3.5 33.9 - - + -
1099C CYS* 5.1 0.2 - - + -
1100C ARG 3.3 9.6 - - - +
1101C VAL* 4.3 2.2 - - + -
1141C ILE* 3.6 8.5 - - + -
1144C GLY 3.4 12.6 + - - +
1145C GLU* 3.3 2.9 + - - +
1146C GLN* 1.3 80.4 - - - +
1148C TYR* 1.3 62.2 + - - +
1149C PRO* 4.3 1.0 - - - +
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Residues in contact with TYR1148 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1000C VAL* 2.8 32.7 + - + +
1001C CYS* 3.4 0.9 - - - -
1002C ASN* 3.0 25.2 + - + +
1005C LEU* 3.9 26.5 - - + -
1006C TRP* 3.6 49.6 - + + -
1009C TYR* 3.8 20.6 - - + -
1044C PHE* 4.5 0.2 - - - -
1099C CYS* 3.3 4.1 - - - -
1100C ARG* 2.8 42.3 + - + +
1147C ALA* 1.3 74.8 - - - +
1149C PRO* 1.3 73.2 - - + +
1150C GLU* 3.0 27.3 + - + -
2166C PEG 3.7 13.5 + - - -
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Residues in contact with PRO1149 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1000C VAL* 3.0 31.4 - - + +
1005C LEU* 5.3 7.0 - - + -
1039C ILE* 4.1 24.2 - - + +
1040C ILE* 4.3 10.8 - - + +
1043C GLY* 5.5 2.2 - - - -
1044C PHE* 4.1 11.8 - - + -
1097C LEU* 3.8 31.9 - - + -
1099C CYS* 3.9 12.3 - - - -
1147C ALA 4.3 1.6 - - - +
1148C TYR* 1.3 93.3 - - + +
1150C GLU* 1.3 59.8 + - - +
1151C TYR 3.5 3.1 - - - -
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Residues in contact with GLU1150 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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999C LYS* 3.4 30.9 + - + +
1000C VAL* 2.9 24.0 + - - +
1006C TRP* 4.3 0.3 - - - -
1028C MET* 4.3 7.6 - - + -
1098C PHE 3.4 11.2 + - - +
1100C ARG* 2.9 49.1 + - - +
1148C TYR* 3.0 24.6 + - + +
1149C PRO* 1.3 73.4 - - - +
1151C TYR* 1.3 84.7 + - + +
2166C PEG 4.0 13.2 + - - +
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Residues in contact with TYR1151 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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958C LEU* 4.0 15.9 - - + -
964C GLU* 2.5 35.7 + - - +
968C VAL* 4.0 18.4 - - + +
997C ILE* 4.1 24.7 - - + -
998C GLN 3.2 9.0 - - - +
999C LYS* 4.3 9.9 - - - -
1000C VAL* 4.3 3.1 - - - -
1028C MET* 4.0 12.8 - - + -
1096C LEU 3.9 0.2 - - - +
1097C LEU* 3.2 9.3 - - - +
1098C PHE* 2.9 61.9 + + + +
1150C GLU* 1.3 104.6 + - + +
1152C LEU* 1.3 59.9 + - - +
1153C ILE* 4.1 3.9 + - + -
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Residues in contact with LEU1152 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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980A ARG* 4.7 4.0 - - - +
955C LEU* 4.1 19.1 - - + -
996C LYS 3.8 1.2 - - - +
997C ILE* 3.5 1.9 - - - -
998C GLN* 2.8 64.4 + - + +
1000C VAL* 4.1 13.2 - - + +
1036C VAL* 3.3 33.7 - - + -
1040C ILE* 4.3 14.6 - - + -
1095C GLN* 3.8 31.9 - - + +
1096C LEU 3.8 4.9 - - - +
1097C LEU* 3.8 7.9 - - + -
1151C TYR* 1.3 72.3 - - - +
1153C ILE* 1.3 62.4 + - - +
1154C THR* 4.0 1.0 + - - +
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Residues in contact with ILE1153 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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968C VAL* 3.7 30.1 - - + -
972C MET* 3.8 30.7 - - + -
994C ILE* 4.0 26.7 - - + -
996C LYS 3.4 8.7 - - - +
997C ILE* 4.2 13.5 - - + -
1030C PHE* 4.2 4.7 - - + -
1094C ARG 3.8 0.2 - - - +
1095C GLN* 3.1 7.1 - - - +
1096C LEU* 2.9 40.9 + - + +
1098C PHE* 3.9 23.3 - - + +
1151C TYR* 4.6 5.4 - - + +
1152C LEU* 1.3 76.5 - - - +
1154C THR* 1.3 66.0 + - - +
1155C TYR* 3.8 1.9 - - + -
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Residues in contact with THR1154 (chain C).
Click here for Legend to table.
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Specific contacts
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Residue Dist Surf HB Arom Phob DC
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1054A MET* 4.2 20.2 - - + -
994C ILE* 3.8 2.8 - - - +
995C LEU* 2.8 25.1 + - + -
996C LYS* 2.8 32.1 + - - +
998C GLN* 4.7 6.4 + - - -
1093C HIS* 4.1 21.1 - - + +
1094C ARG 3.3 10.1 - - - +
1095C GLN* 3.0 28.7 + - + +
1152C LEU* 4.0 1.6 + - - +
1153C ILE* 1.3 70.5 - - - +
1155C TYR* 1.3 65.7 + - - +
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Residues in contact with TYR1155 (chain C).
Click here for Legend to table.
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Specific contacts
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Residue Dist Surf HB Arom Phob DC
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972C MET* 4.0 10.1 - - + -
992C TYR* 3.4 32.3 - + + -
993C ASN 3.2 14.8 - - - +
994C ILE* 4.0 15.7 - - + -
995C LEU* 3.9 4.5 - - - -
1069C ASN* 2.7 29.1 + - - +
1072C VAL* 3.5 18.9 - - - +
1093C HIS* 3.6 2.6 - - - -
1094C ARG* 2.7 72.0 + - + +
1095C GLN 3.8 0.2 - - - -
1096C LEU* 3.5 33.3 - - + +
1153C ILE* 3.8 10.3 - - + -
1154C THR* 1.3 76.3 - - - +
1156C GLN* 1.3 69.3 + - - +
1157C ILE* 4.1 2.0 - - + -
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Residues in contact with GLN1156 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1109A GLN* 4.6 5.5 - - - +
992C TYR* 3.4 6.4 - - - +
993C ASN* 2.8 61.9 + - + +
995C LEU* 3.9 13.8 - - + +
1090C TYR 3.7 15.3 + - - +
1091C ILE* 2.9 26.8 + - - +
1092C CYS 4.0 8.5 - - - +
1093C HIS* 3.9 18.5 + - + -
1094C ARG* 5.2 0.9 - - - +
1155C TYR* 1.3 83.5 - - - +
1157C ILE* 1.3 67.1 + - - +
1158C MET* 5.7 0.2 - - + -
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Residues in contact with ILE1157 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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986C GLY 3.9 10.1 - - - +
987C GLY* 4.0 0.9 - - - -
988C ILE 4.3 0.2 - - - +
989C PHE* 3.6 43.3 - - + -
991C ARG 4.1 4.5 - - - -
992C TYR* 4.1 9.4 - - + -
1069C ASN* 3.9 18.6 - - - +
1088C SER* 3.9 13.0 - - - +
1089C CYS 3.5 17.8 + - - +
1090C TYR* 3.5 37.1 - - + +
1094C ARG* 3.5 27.1 - - - +
1155C TYR* 4.1 2.8 - - + -
1156C GLN* 1.3 81.7 - - - +
1158C MET* 1.3 59.7 + - - +
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
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Atomic class I II III IV V VI VII VIII
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I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
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Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il