Contacts of the helix formed by residues 195 - 256 (chain D) in PDB entry 4WY4
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with LEU 195 (chain D).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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49C VAL* 3.7 28.5 - - + +
50C LEU* 3.8 27.7 - - + +
53C ALA* 3.6 30.5 - - + -
194D HIS* 1.3 73.0 - - - +
196D ARG* 1.3 56.9 + - - +
198D TYR* 3.0 8.0 + - - +
199D HIS* 3.0 50.6 + - + +
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Residues in contact with ARG 196 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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194D HIS* 3.2 7.3 - - + +
195D LEU* 1.3 79.2 - - - +
197D ALA* 1.3 57.3 + - - +
199D HIS* 3.3 9.5 + - - +
200D GLN* 3.0 31.2 + - - +
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Residues in contact with ALA 197 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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194D HIS* 3.1 22.4 + - + +
196D ARG* 1.3 79.4 - - - +
198D TYR* 1.3 64.3 + - + +
200D GLN* 3.5 13.4 + - - +
201D LYS* 3.1 23.2 + - - +
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Residues in contact with TYR 198 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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50C LEU* 4.5 15.0 - - + -
53C ALA* 3.7 30.3 - - + +
54C GLU* 3.4 38.4 - - + +
57C ALA* 3.9 18.6 - - + -
194D HIS 3.3 22.8 + - - -
195D LEU* 3.0 12.8 + - - +
197D ALA* 1.3 79.8 - - + +
199D HIS* 1.3 57.0 + - - +
201D LYS* 3.2 5.9 + - + +
202D ILE* 2.9 35.5 + - - +
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Residues in contact with HIS 199 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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49C VAL* 5.1 5.8 - - + +
52C ARG* 6.1 2.5 - - - -
53C ALA* 4.1 12.4 - - + +
195D LEU* 3.0 50.2 + - + +
196D ARG* 3.7 10.3 - - - +
198D TYR* 1.3 75.5 - - - +
200D GLN* 1.3 57.4 + - - +
202D ILE* 3.3 12.9 + - + +
203D ASP* 2.9 29.8 + - - +
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Residues in contact with GLN 200 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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196D ARG 3.0 16.2 + - - +
197D ALA* 3.7 13.1 - - - +
199D HIS* 1.3 77.1 - - - +
201D LYS* 1.3 61.5 + - - +
203D ASP* 3.4 7.2 + - - +
204D SER* 3.1 24.1 + - - -
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Residues in contact with LYS 201 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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57C ALA* 4.4 13.5 - - + -
61C SER* 3.8 13.9 - - - +
64C LEU* 5.9 1.2 - - - +
197D ALA 3.1 17.9 + - - +
198D TYR* 3.5 7.4 - - + +
200D GLN* 1.3 72.7 - - - +
202D ILE* 1.3 63.0 + - - +
204D SER* 3.1 13.1 + - - +
205D ASN* 2.9 57.1 + - - +
208D GLU* 5.5 3.4 + - - -
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Residues in contact with ILE 202 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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170B GLU* 5.7 1.6 - - - +
172B TRP* 5.1 1.6 - - - +
53C ALA* 3.6 28.3 - - - +
56C THR* 3.7 28.7 - - + -
57C ALA* 3.6 21.3 - - - +
60C THR* 4.3 10.1 - - + +
198D TYR 2.9 25.0 + - - +
199D HIS* 3.7 14.6 - - + +
201D LYS* 1.3 74.4 - - - +
203D ASP* 1.3 58.7 + - - +
205D ASN* 3.2 2.0 + - - +
206D LEU* 2.9 49.6 + - + +
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Residues in contact with ASP 203 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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199D HIS 2.9 17.0 + - - +
200D GLN* 3.7 7.7 - - - +
202D ILE* 1.3 79.5 - - - +
204D SER* 1.3 64.0 + - - +
206D LEU* 3.3 8.3 + - - +
207D ASP* 3.1 37.3 + - - +
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Residues in contact with SER 204 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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200D GLN* 3.1 14.8 + - - -
201D LYS* 3.1 22.0 + - - +
203D ASP* 1.3 76.0 + - - +
205D ASN* 1.3 63.6 + - - +
207D ASP* 3.3 8.7 + - - +
208D GLU* 2.9 44.4 + - - +
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Residues in contact with ASN 205 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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57C ALA 3.5 3.0 + - - -
60C THR* 2.9 38.2 + - - +
61C SER* 3.0 30.9 + - - +
64C LEU* 3.6 22.8 - - + +
201D LYS* 2.9 45.0 + - - +
202D ILE 3.5 1.8 - - - +
204D SER* 1.3 80.1 + - - +
206D LEU* 1.3 56.4 + - - +
208D GLU* 3.3 2.6 + - - +
209D LEU* 2.8 34.7 + - - +
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Residues in contact with LEU 206 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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12A ARG* 5.9 1.1 - - + -
16A LEU* 4.0 13.5 - - + +
170B GLU* 5.2 2.2 - - - +
172B TRP* 3.6 54.3 - - + +
60C THR* 4.0 14.4 - - + -
202D ILE* 2.9 36.4 + - + +
203D ASP* 3.8 7.2 - - - +
204D SER 3.3 0.2 - - - -
205D ASN* 1.3 75.5 - - - +
207D ASP* 1.3 65.2 + - - +
209D LEU* 3.4 8.6 + - + +
210D SER* 3.0 25.1 + - - -
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Residues in contact with ASP 207 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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203D ASP* 3.1 32.2 + - - +
204D SER* 3.5 10.7 - - - +
206D LEU* 1.3 78.0 - - - +
208D GLU* 1.3 59.5 + - + +
210D SER* 3.3 7.0 + - - -
211D MET* 3.0 48.5 + - + +
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Residues in contact with GLU 208 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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64C LEU* 3.4 31.7 - - + +
67C MET* 3.9 5.4 - - - +
68C TYR* 2.8 30.1 + - - +
201D LYS* 5.5 2.8 + - - -
204D SER* 2.9 32.9 + - - +
205D ASN* 3.8 2.7 - - - +
207D ASP* 1.3 77.7 - - + +
209D LEU* 1.3 57.0 + - - +
211D MET* 3.9 8.3 - - - +
212D GLY* 2.9 26.9 + - - -
215D ARG* 5.0 0.9 + - - -
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Residues in contact with LEU 209 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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16A LEU* 4.2 10.3 - - + -
175B LEU* 4.0 21.3 - - + -
179B LEU* 4.2 10.1 - - + -
60C THR* 4.0 20.6 - - - +
63C SER* 3.8 13.5 - - - +
64C LEU* 3.7 33.4 - - + +
67C MET* 4.3 10.7 - - + +
205D ASN 2.8 21.2 + - - +
206D LEU* 3.6 21.1 - - + +
208D GLU* 1.3 74.5 - - - +
210D SER* 1.3 59.7 + - - +
212D GLY 3.8 0.2 - - - -
213D LEU* 2.9 42.1 + - + +
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Residues in contact with SER 210 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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16A LEU* 4.0 19.8 - - - +
206D LEU 3.0 17.5 + - - -
207D ASP* 3.6 6.7 - - - -
209D LEU* 1.3 76.8 - - - +
211D MET* 1.3 63.4 + - - +
213D LEU* 3.9 2.5 - - - +
214D GLY* 3.2 17.5 + - - -
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Residues in contact with MET 211 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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207D ASP* 3.0 33.4 + - + +
208D GLU* 4.0 7.0 - - - +
210D SER* 1.3 77.1 - - - +
212D GLY* 1.3 61.9 + - - +
214D GLY* 3.1 4.7 + - - -
215D ARG* 3.1 38.8 + - - +
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Residues in contact with GLY 212 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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67C MET* 3.5 27.3 - - - +
71C GLU* 5.1 0.2 - - - +
208D GLU 2.9 16.3 + - - -
210D SER 3.3 0.2 - - - -
211D MET* 1.3 77.1 - - - +
213D LEU* 1.3 54.4 + - - +
215D ARG* 3.2 21.5 + - - +
216D LEU* 2.9 30.8 + - - +
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Residues in contact with LEU 213 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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16A LEU* 3.6 27.4 - - + +
19A GLU* 4.5 13.9 - - + -
20A VAL* 3.6 41.3 - - + -
23A VAL* 3.9 10.8 - - + +
175B LEU* 5.4 1.6 - - + -
179B LEU* 4.3 12.3 - - + -
182B LEU* 4.4 6.3 - - + -
67C MET* 4.7 5.8 - - + -
209D LEU* 2.9 27.9 + - + +
210D SER* 3.9 4.5 - - - +
212D GLY* 1.3 72.3 - - - +
214D GLY* 1.3 59.8 + - - +
216D LEU* 3.4 20.2 + - + +
217D LYS* 2.9 29.1 + - - +
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Residues in contact with GLY 214 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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19A GLU* 6.2 0.2 - - - -
210D SER 3.2 9.4 + - - -
211D MET 3.1 8.9 + - - -
213D LEU* 1.3 78.5 - - - +
215D ARG* 1.3 59.2 + - - +
217D LYS* 3.3 9.0 + - - +
218D ASP* 3.1 29.1 + - - +
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Residues in contact with ARG 215 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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67C MET* 4.2 0.4 - - - +
68C TYR* 3.4 26.3 + - - -
71C GLU* 2.7 45.3 + - - +
208D GLU 5.0 0.8 + - - -
211D MET* 3.1 33.1 + - - +
212D GLY* 3.2 21.0 + - - +
214D GLY* 1.3 75.0 - - - +
216D LEU* 1.3 59.2 + - - +
218D ASP* 3.3 12.1 + - - +
219D ILE* 2.9 34.3 + - + +
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Residues in contact with LEU 216 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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23A VAL* 4.0 15.4 - - + +
179B LEU* 5.6 0.2 - - + -
182B LEU* 4.2 13.7 - - + -
186B VAL* 5.1 9.4 - - + -
67C MET* 3.7 37.9 - - + +
70C SER* 4.1 14.8 - - - +
71C GLU* 3.9 30.1 - - + +
74C GLY* 5.9 0.4 - - - -
212D GLY 2.9 13.6 + - - +
213D LEU* 3.7 18.4 - - + +
215D ARG* 1.3 74.1 - - - +
217D LYS* 1.3 59.5 + - - +
219D ILE* 3.3 14.5 + - + +
220D ALA* 2.9 30.7 + - - +
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Residues in contact with LYS 217 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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19A GLU* 5.1 12.6 + - - +
22A GLY 6.1 1.6 - - - -
23A VAL* 3.8 17.9 - - + +
26A ILE* 4.1 17.3 - - + -
213D LEU 2.9 17.4 + - - +
214D GLY* 3.5 9.0 - - - +
215D ARG 3.3 0.2 - - - -
216D LEU* 1.3 75.6 - - - +
218D ASP* 1.3 60.8 + - - +
220D ALA* 3.2 5.0 + - - +
221D LEU* 2.8 58.1 + - + +
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Residues in contact with ASP 218 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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214D GLY 3.1 17.6 + - - +
215D ARG* 3.4 12.5 - - - +
217D LYS* 1.3 78.4 - - - +
219D ILE* 1.3 57.7 + - + +
221D LEU* 3.4 12.4 + - - +
222D GLY* 2.9 26.2 + - - -
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Residues in contact with ILE 219 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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27A MET* 6.1 0.2 - - - -
71C GLU* 3.7 28.7 - - + +
74C GLY* 3.9 11.9 - - - +
75C VAL* 3.7 29.4 - - + -
78C SER* 3.8 20.1 + - - +
215D ARG* 2.9 22.9 + - + +
216D LEU* 3.3 15.2 + - + +
218D ASP* 1.3 75.2 - - + +
220D ALA* 1.3 58.5 + - - +
222D GLY* 3.1 3.7 + - - -
223D MET* 2.9 44.6 + - + +
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Residues in contact with ALA 220 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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23A VAL* 4.2 9.0 - - + -
26A ILE* 3.6 25.7 - - + +
27A MET* 3.8 23.3 - - + -
30A ASN* 3.0 23.5 + - - +
216D LEU 2.9 16.8 + - - +
217D LYS* 3.7 4.7 - - - +
219D ILE* 1.3 75.1 - - - +
221D LEU* 1.3 62.6 + - - +
223D MET* 3.3 7.4 + - - -
224D GLN 3.0 10.0 + - - -
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Residues in contact with LEU 221 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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26A ILE* 3.7 23.8 - - + -
217D LYS* 2.8 46.1 + - + +
218D ASP* 3.8 11.0 - - - +
220D ALA* 1.3 75.0 - - - +
222D GLY* 1.3 59.8 + - - +
224D GLN* 3.2 26.7 + - - +
225D THR* 2.9 33.2 + - - -
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Residues in contact with GLY 222 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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78C SER* 5.5 2.2 - - - -
218D ASP 2.9 15.3 + - - -
219D ILE* 3.1 4.2 + - - -
221D LEU* 1.3 75.4 - - - +
223D MET* 1.3 56.8 + - - +
225D THR* 3.3 7.5 + - - -
226D GLU* 2.9 30.0 + - - +
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Residues in contact with MET 223 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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27A MET* 3.6 32.5 - - + +
30A ASN* 3.6 10.8 - - - +
186B VAL* 5.3 2.9 - - + -
189B PHE* 3.7 42.4 - - + -
74C GLY* 3.5 38.4 - - - +
77C SER* 4.3 4.0 - - - -
78C SER* 3.7 13.4 + - - +
81C LEU* 4.5 6.5 - - + -
219D ILE* 2.9 23.1 + - + +
220D ALA* 3.5 6.3 - - - +
221D LEU 3.3 0.2 - - - -
222D GLY* 1.3 76.3 - - - +
224D GLN* 1.3 63.4 + - - +
226D GLU* 3.2 5.9 + - - +
227D ILE* 2.9 30.2 + - - +
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Residues in contact with GLN 224 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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26A ILE* 4.4 15.1 - - + +
29A GLN* 2.8 35.1 + - - +
30A ASN* 3.3 16.7 + - - +
33A ARG* 5.0 0.4 + - - +
220D ALA 3.0 11.4 + - - +
221D LEU* 3.2 32.2 + - - +
223D MET* 1.3 76.6 - - - +
225D THR* 1.3 63.4 + - - +
227D ILE* 3.4 5.2 + - - +
228D GLU* 3.0 44.1 + - - +
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Residues in contact with THR 225 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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221D LEU* 2.9 17.2 + - - +
222D GLY* 3.7 6.7 - - - -
224D GLN* 1.3 79.8 + - - +
226D GLU* 1.3 57.0 + - - +
228D GLU* 3.3 16.1 + - - +
229D GLU* 3.0 29.4 + - + +
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Residues in contact with GLU 226 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
78C SER 5.4 1.1 - - - +
81C LEU* 3.8 23.4 - - + +
82C ALA* 4.4 9.0 - - - +
85C ARG* 2.6 50.0 + - - +
222D GLY 2.9 17.6 + - - +
223D MET* 3.6 5.6 - - - +
225D THR* 1.3 77.8 - - - +
227D ILE* 1.3 56.5 + - - +
229D GLU* 3.3 5.5 + - - +
230D GLN* 2.7 62.5 + - - +
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Residues in contact with ILE 227 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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30A ASN* 3.9 26.9 - - - +
33A ARG* 3.2 42.6 - - + +
34A ILE* 4.0 19.7 - - + +
37A ARG* 5.2 5.6 - - - +
189B PHE* 3.8 28.7 - - + -
81C LEU* 4.3 9.6 - - + -
223D MET 2.9 21.3 + - - +
224D GLN* 3.8 4.0 - - - +
226D GLU* 1.3 74.8 - - - +
228D GLU* 1.3 56.8 + - - +
230D GLN* 3.3 6.7 + - - +
231D ASP* 2.8 39.2 + - - +
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Residues in contact with GLU 228 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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29A GLN* 5.0 1.7 - - - +
33A ARG* 3.2 25.7 + - - +
224D GLN* 3.0 37.5 + - + +
225D THR* 3.5 17.8 + - - +
227D ILE* 1.3 75.7 - - - +
229D GLU* 1.3 62.0 + - - +
231D ASP* 3.3 5.2 + - - +
232D ASP* 3.2 25.8 + - - +
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Residues in contact with GLU 229 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
85C ARG* 3.7 28.0 + - - +
89C GLU* 4.7 4.0 - - - +
225D THR* 3.0 19.2 + - + +
226D GLU* 3.3 7.6 + - - +
228D GLU* 1.3 75.2 - - - +
230D GLN* 1.3 63.1 + - - +
232D ASP* 3.2 12.1 + - - +
233D ILE* 3.1 32.4 + - + +
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Residues in contact with GLN 230 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
37A ARG* 2.5 42.7 + - - +
81C LEU* 2.9 30.9 + - - +
85C ARG* 3.5 22.8 + - + +
88C LEU* 3.7 12.2 - - + +
226D GLU* 2.7 49.4 + - - +
227D ILE* 3.8 4.7 - - - +
229D GLU* 1.3 73.4 - - - +
231D ASP* 1.3 62.0 + - - +
233D ILE* 3.3 8.3 + - + +
234D LEU* 2.8 36.1 + - + +
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Residues in contact with ASP 231 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
33A ARG* 2.2 46.2 + - - +
37A ARG* 4.7 14.9 + - - +
40A ASN* 5.0 9.9 + - - +
227D ILE* 2.8 22.0 + - - +
228D GLU* 3.4 8.7 - - - +
229D GLU 3.3 0.2 - - - -
230D GLN* 1.3 76.3 - - - +
232D ASP* 1.3 62.1 + - - +
234D LEU* 3.4 6.6 + - - +
235D ASP* 3.0 30.0 + - - +
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Residues in contact with ASP 232 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
228D GLU 3.2 11.1 + - - +
229D GLU* 3.2 14.2 + - - +
230D GLN 3.2 0.4 - - - -
231D ASP* 1.3 80.8 - - - +
233D ILE* 1.3 65.6 + - + +
235D ASP* 3.4 10.2 + - - +
236D ARG* 3.0 36.7 + - - +
----------------------------------------------------------
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Residues in contact with ILE 233 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
85C ARG* 3.8 36.1 - - + +
88C LEU* 4.0 33.0 - - + +
89C GLU* 4.1 16.4 - - + +
92C GLU* 4.0 15.1 - - - +
229D GLU* 3.1 25.7 + - + +
230D GLN* 3.3 10.3 + - + +
232D ASP* 1.3 74.8 - - + +
234D LEU* 1.3 59.9 + - - +
236D ARG* 3.3 23.1 + - - +
237D LEU* 2.8 32.8 + - + +
----------------------------------------------------------
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Residues in contact with LEU 234 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
37A ARG* 3.9 35.7 - - + +
40A ASN* 4.9 16.6 - - + +
41A LEU* 3.6 31.4 - - + -
44A LEU* 4.0 17.3 - - + -
88C LEU* 3.6 29.4 - - + -
230D GLN 2.8 26.2 + - - +
231D ASP* 3.9 7.6 - - - +
233D ILE* 1.3 73.7 - - - +
235D ASP* 1.3 53.6 + - - +
237D LEU* 3.7 4.6 - - + +
238D THR* 2.8 40.0 + - - +
----------------------------------------------------------
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Residues in contact with ASP 235 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
231D ASP 3.0 18.2 + - - +
232D ASP* 3.6 10.1 - - - +
233D ILE 3.3 0.2 - - - -
234D LEU* 1.3 76.1 - - - +
236D ARG* 1.3 63.5 + - - +
238D THR* 3.3 6.8 + - - -
239D THR* 3.0 30.3 + - - -
----------------------------------------------------------
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Residues in contact with ARG 236 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
92C GLU* 2.7 40.0 + - - +
232D ASP* 3.0 28.9 + - - +
233D ILE* 3.7 23.3 - - - +
235D ASP* 1.3 79.2 - - - +
237D LEU* 1.3 57.6 + - - +
239D THR* 3.3 8.3 + - - -
240D LYS* 2.9 50.4 + - + +
----------------------------------------------------------
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Residues in contact with LEU 237 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
44A LEU* 3.8 23.8 - - + -
203B ILE* 4.9 0.4 - - + -
88C LEU* 4.1 31.9 - - + +
91C THR* 4.1 16.2 - - + -
92C GLU* 3.7 34.8 + - + +
95C VAL* 3.8 23.8 - - + -
233D ILE* 2.8 23.1 + - + +
234D LEU* 3.7 7.9 - - + +
236D ARG* 1.3 73.1 - - - +
238D THR* 1.3 56.5 + - - +
240D LYS* 3.3 5.9 + - + +
241D VAL* 2.9 38.0 + - + +
----------------------------------------------------------
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Residues in contact with THR 238 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
40A ASN* 5.1 2.1 + - - +
44A LEU* 3.8 27.9 - - + +
47A LYS* 3.9 30.7 - - + -
234D LEU* 2.8 22.8 + - - +
235D ASP* 3.6 7.0 - - - -
236D ARG 3.3 0.2 - - - -
237D LEU* 1.3 74.8 - - - +
239D THR* 1.3 63.7 + - - +
241D VAL* 3.3 1.9 + - - +
242D ASP* 2.9 29.4 + - - +
----------------------------------------------------------
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Residues in contact with THR 239 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
235D ASP* 3.0 25.8 + - - -
236D ARG* 3.6 8.0 - - - -
238D THR* 1.3 76.8 - - - +
240D LYS* 1.3 65.3 + - + +
242D ASP* 3.3 9.0 + - - +
243D LYS* 3.0 25.6 + - + +
----------------------------------------------------------
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Residues in contact with LYS 240 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
92C GLU* 2.7 36.2 + - + +
95C VAL* 3.7 20.8 - - + +
96C ASP* 2.9 33.5 + - - +
236D ARG* 2.9 34.5 + - + +
237D LEU* 3.3 4.9 + - - +
239D THR* 1.3 79.1 - - + +
241D VAL* 1.3 56.4 + - - +
243D LYS* 3.4 6.1 + - - +
244D LEU* 2.8 31.7 + - - +
----------------------------------------------------------
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Residues in contact with VAL 241 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
44A LEU* 4.1 8.5 - - + -
47A LYS* 4.0 38.8 - - + +
48A THR* 4.1 20.4 - - + -
51A LEU* 4.3 16.2 - - + +
207B VAL* 5.0 0.2 - - + -
95C VAL* 4.1 23.6 - - + -
237D LEU* 2.9 25.4 + - + +
238D THR 3.8 3.1 - - - +
240D LYS* 1.3 73.2 - - - +
242D ASP* 1.3 65.8 + - - +
244D LEU* 3.8 6.1 - - - +
245D ASP* 3.0 25.7 + - + +
----------------------------------------------------------
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Residues in contact with ASP 242 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
47A LYS* 2.8 44.3 + - - +
238D THR* 2.9 24.2 + - - +
239D THR* 3.7 7.6 - - - +
241D VAL* 1.3 79.0 - - - +
243D LYS* 1.3 62.7 + - - +
245D ASP* 3.6 5.4 + - - +
246D VAL* 3.5 23.4 + - - +
----------------------------------------------------------
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Residues in contact with LYS 243 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
99C ASP* 4.4 11.5 + - - +
239D THR* 3.0 20.0 + - + +
240D LYS* 3.9 6.3 - - - +
242D ASP* 1.3 73.8 - - - +
244D LEU* 1.3 61.4 + - - +
246D VAL* 3.2 9.0 + - + +
247D ASN* 2.8 63.1 + - - +
----------------------------------------------------------
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Residues in contact with LEU 244 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
51A LEU* 4.0 13.2 - - + -
95C VAL* 3.9 16.8 - - + -
98C MET* 3.6 52.5 - - + -
99C ASP* 4.0 18.2 - - + +
102C LEU* 3.8 23.8 - - + -
240D LYS 2.8 18.2 + - - +
241D VAL* 3.8 4.0 - - - +
243D LYS* 1.3 78.6 - - - +
245D ASP* 1.3 56.6 + - - +
247D ASN* 3.1 5.8 + - + -
248D ILE* 2.8 44.6 + - + +
----------------------------------------------------------
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Residues in contact with ASP 245 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
47A LYS 4.9 1.6 - - - +
50A ASP* 4.2 15.6 - - - +
51A LEU* 3.6 24.6 + - + +
54A THR* 2.7 37.2 + - - +
241D VAL* 3.0 18.4 + - + +
242D ASP* 3.9 5.2 - - - +
243D LYS 3.3 0.4 - - - -
244D LEU* 1.3 75.5 - - - +
246D VAL* 1.3 63.6 + - + +
248D ILE* 4.8 1.1 - - - -
249D LYS* 3.1 25.7 + - - +
----------------------------------------------------------
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Residues in contact with VAL 246 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
242D ASP 3.5 12.7 + - - +
243D LYS* 3.2 10.4 + - - +
245D ASP* 1.3 79.6 - - + +
247D ASN* 1.3 66.2 + - - +
249D LYS* 3.4 21.0 + - - +
250D SER* 2.8 41.6 + - - +
----------------------------------------------------------
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Residues in contact with ASN 247 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
99C ASP* 4.4 7.3 - - - +
102C LEU* 3.6 18.6 - - + -
243D LYS* 2.8 57.4 + - - +
244D LEU* 3.7 5.3 - - + +
246D VAL* 1.3 82.5 - - - +
248D ILE* 1.3 63.5 + - - +
250D SER* 3.4 6.7 + - - -
251D THR* 2.8 29.9 + - - +
----------------------------------------------------------
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Residues in contact with ILE 248 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
51A LEU* 3.8 30.7 - - + -
54A THR* 3.6 23.6 - - + +
55A SER* 4.4 8.1 - - - -
58A PHE* 3.6 33.3 - - + -
214B VAL* 3.8 21.5 - - + -
98C MET* 4.7 0.9 - - - -
102C LEU* 3.7 23.3 - - + -
244D LEU* 2.8 30.7 + - + +
247D ASN* 1.3 72.1 - - - +
249D LYS* 1.3 63.8 + - - +
251D THR* 3.2 1.9 + - - -
252D GLU* 2.9 22.2 + - + +
----------------------------------------------------------
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Residues in contact with LYS 249 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
54A THR* 3.8 13.4 - - + +
245D ASP 3.1 15.9 + - - +
246D VAL* 3.7 23.1 - - - +
248D ILE* 1.3 76.0 - - - +
250D SER* 1.3 66.4 + - - +
252D GLU* 3.4 10.5 + - - +
253D ARG 3.1 17.8 + - - -
----------------------------------------------------------
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Residues in contact with SER 250 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
246D VAL* 2.8 31.1 + - - +
247D ASN* 3.8 7.8 + - - -
248D ILE 3.2 0.2 - - - -
249D LYS* 1.3 82.1 - - - +
251D THR* 1.3 61.0 + - - +
253D ARG 3.3 1.7 + - - -
254D LYS* 3.2 33.6 + - - +
----------------------------------------------------------
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Residues in contact with THR 251 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
58A PHE* 3.8 20.2 - - + -
102C LEU* 3.9 26.5 + - + +
105C SER* 4.3 8.7 - - - -
106C GLN* 5.1 6.4 + - + +
109C ILE* 3.7 22.2 - - + -
247D ASN* 2.8 19.2 + - - +
248D ILE 3.7 3.6 - - - -
250D SER* 1.3 73.0 - - - +
252D GLU* 1.3 66.6 + - - +
254D LYS* 3.0 12.1 + - - +
255D VAL* 3.0 21.2 + - + +
----------------------------------------------------------
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Residues in contact with GLU 252 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
54A THR* 5.7 0.4 - - + +
57A HIS* 3.8 23.8 - - + +
58A PHE* 3.8 25.9 - - + +
61A THR* 2.6 31.5 + - - +
248D ILE* 2.9 16.1 + - + +
249D LYS* 3.6 10.8 - - - +
250D SER 3.3 0.2 - - - -
251D THR* 1.3 77.5 - - - +
253D ARG 1.3 60.9 + - - +
255D VAL* 3.2 6.8 + - - +
256D ARG* 2.6 52.8 + - - +
----------------------------------------------------------
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Residues in contact with ARG 253 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
249D LYS 3.1 15.0 + - - -
250D SER 3.3 2.5 + - - -
251D THR 3.2 0.2 - - - -
252D GLU* 1.3 79.1 + - - +
254D LYS* 1.3 61.6 - - - +
256D ARG* 3.4 20.2 - - - +
257D GLN* 3.5 15.4 - - - -
----------------------------------------------------------
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Residues in contact with LYS 254 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
106C GLN* 3.1 34.8 + - - +
109C ILE* 4.2 16.1 - - + +
250D SER* 3.2 19.4 + - - +
251D THR* 3.0 12.8 + - - +
253D ARG 1.3 74.8 - - - +
255D VAL* 1.3 63.5 + - - +
257D GLN* 3.0 22.4 + - - +
258D LEU* 3.8 11.0 - - - +
----------------------------------------------------------
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Residues in contact with VAL 255 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
58A PHE* 4.5 1.8 - - + -
61A THR* 3.6 19.1 - - + +
62A SER* 4.2 8.1 - - - +
65A VAL* 3.5 27.8 - - + +
221B LEU* 3.8 34.3 - - + -
109C ILE* 3.7 20.2 - - + -
251D THR* 3.0 17.6 + - + +
252D GLU* 3.2 9.4 + - - +
254D LYS* 1.3 75.1 - - - +
256D ARG* 1.3 62.2 + - - +
258D LEU* 3.0 26.6 + - + +
----------------------------------------------------------
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Residues in contact with ARG 256 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
61A THR* 3.8 15.2 + - + -
64A LYS* 5.8 3.2 - - - +
65A VAL* 5.3 1.8 - - - -
252D GLU* 2.6 48.6 + - - +
253D ARG 3.4 12.3 - - - +
254D LYS 3.2 0.2 - - - -
255D VAL* 1.3 77.6 - - - +
257D GLN* 1.3 69.2 + - - +
258D LEU* 3.3 3.7 + - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il