Contacts of the helix formed by residues 1066 - 1100 (chain J) in PDB entry 4XLR
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with THR1066 (chain J).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
500I ASN* 4.6 11.2 - - + +
514I VAL* 6.5 0.2 - - + -
906I PHE* 3.6 3.8 - - - -
1064J GLY 4.2 1.3 + - - +
1065J LEU* 1.3 75.3 - - - +
1067J VAL* 1.3 66.4 + - - +
1068J LEU* 3.1 24.2 + - + +
1069J GLU* 3.1 31.6 + - - +
1070J TYR 3.2 16.1 + - - -
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Residues in contact with VAL1067 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
435I TYR* 5.2 2.9 - - + +
498I GLN* 4.1 15.9 - - - +
500I ASN* 3.9 16.2 - - + +
536I PRO* 3.7 21.1 - - + -
539I VAL* 3.8 39.5 - - + -
540I PHE* 5.4 1.0 - - + -
906I PHE* 3.5 40.8 - - + -
1066J THR* 1.3 72.9 - - - +
1068J LEU* 1.3 64.8 + - - +
1070J TYR* 3.4 3.3 + - - +
1071J PHE* 2.9 23.1 + - + +
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Residues in contact with LEU1068 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
498I GLN* 4.0 22.4 + - + +
500I ASN* 3.6 25.4 - - - +
514I VAL* 3.7 32.8 - - + -
515I ALA 5.1 6.1 - - - +
521I PRO* 5.0 17.5 - - + -
1066J THR* 3.3 18.6 - - + +
1067J VAL* 1.3 75.7 - - - +
1069J GLU* 1.3 66.1 + - + +
1071J PHE* 2.9 17.2 + - - +
1072J ILE* 3.0 28.2 + - + +
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Residues in contact with GLU1069 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1045J MET* 4.6 2.3 - - - +
1056J PRO 5.4 0.7 - - - +
1057J VAL* 2.7 46.3 - - + +
1058J ARG* 5.5 0.2 - - - +
1059J SER* 3.9 10.4 + - - +
1065J LEU* 3.2 32.2 - - + +
1066J THR* 3.1 44.7 + - - +
1068J LEU* 1.3 74.7 - - + +
1070J TYR* 1.3 61.0 + - - +
1072J ILE* 3.4 11.7 + - + +
1073J SER* 2.9 30.6 + - - -
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Residues in contact with TYR1070 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
441I VAL* 4.5 12.3 - - + -
540I PHE* 3.6 31.1 - + + -
550I LEU* 3.2 33.1 + - + +
551I GLU* 3.9 14.1 - - - -
553I ASP 2.9 23.0 + - - -
555I ALA* 3.9 13.4 - - + -
558I ALA* 3.7 21.3 - - - +
906I PHE* 3.5 27.8 - + + -
1065J LEU* 4.4 11.1 - - + +
1066J THR 3.2 5.5 + - - +
1067J VAL 3.5 8.1 - - - +
1068J LEU 3.2 0.4 - - - -
1069J GLU* 1.3 79.9 - - - +
1071J PHE* 1.3 58.4 + - - +
1073J SER* 2.5 21.8 + - - -
1074J SER* 2.9 13.3 + - - -
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Residues in contact with PHE1071 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
430I VAL* 5.1 1.1 - - + -
432I ARG 3.9 14.1 - - - -
434I HIS* 3.7 14.4 - - + -
435I TYR* 3.1 61.0 - + - -
438I ILE 5.8 0.2 - - - -
440I PRO* 3.7 35.2 - - + -
539I VAL* 4.8 11.9 - - + -
540I PHE* 6.1 1.8 - - + -
1067J VAL* 2.9 12.5 + - + +
1068J LEU* 2.9 12.4 + - - +
1070J TYR* 1.3 74.6 - - - +
1072J ILE* 1.3 66.5 + - + +
1074J SER* 3.0 13.8 + - - -
1075J HIS* 3.0 38.1 + + - -
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Residues in contact with ILE1072 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
521I PRO* 4.2 23.8 - - + -
1045J MET* 3.5 21.1 - - + +
1046J GLN 4.2 0.7 - - - +
1053J PHE* 3.4 47.1 - - + -
1055J VAL* 4.2 12.6 - - + +
1057J VAL* 5.6 3.8 - - + -
1068J LEU* 3.0 27.1 + - + +
1069J GLU* 3.8 9.4 - - + +
1071J PHE* 1.3 75.2 - - + +
1073J SER* 1.3 63.7 + - - +
1075J HIS* 3.0 30.6 + - + +
1076J GLY 3.2 3.8 + - - -
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Residues in contact with SER1073 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
555I ALA* 5.8 2.7 - - - +
1042J ARG* 4.6 13.5 - - - -
1045J MET* 3.6 35.7 - - - +
1065J LEU* 5.1 2.3 - - - +
1069J GLU 2.9 15.4 + - - -
1070J TYR* 2.5 31.5 + - - -
1072J ILE* 1.3 75.5 - - - +
1074J SER* 1.3 56.1 + - - +
1076J GLY* 3.0 2.8 + - - -
1077J ALA* 2.8 32.5 + - - +
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Residues in contact with SER1074 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
430I VAL* 4.3 1.6 - - - +
440I PRO* 3.1 45.1 + - - +
441I VAL* 4.1 11.0 - - - +
555I ALA* 4.9 6.1 - - - -
1070J TYR* 2.9 14.2 + - - -
1071J PHE* 3.0 14.8 + - - -
1073J SER* 1.3 79.3 + - - +
1075J HIS* 1.3 66.6 + - - +
1077J ALA* 4.5 5.2 - - - -
1078J ARG* 3.0 25.1 + - - +
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Residues in contact with HIS1075 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
429I ASP* 4.2 4.7 - - - +
430I VAL* 3.2 38.0 + - + +
431I HIS 3.5 14.1 - - - -
432I ARG* 4.0 15.9 + - + +
519I GLY 6.0 0.2 + - - -
1046J GLN 4.0 2.5 - - - +
1048J PRO* 3.6 34.5 - - + -
1053J PHE* 4.5 13.7 - + - -
1071J PHE* 3.0 44.2 + + - -
1072J ILE* 3.0 17.5 - - + +
1074J SER* 1.3 79.0 - - - +
1076J GLY* 1.3 65.8 + - - +
1078J ARG* 4.0 1.2 - - - +
1079J LYS* 3.1 20.5 + - - +
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Residues in contact with GLY1076 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1045J MET* 5.9 0.7 - - - -
1046J GLN* 3.7 24.0 + - - -
1072J ILE 3.2 4.6 + - - -
1073J SER* 3.0 7.1 + - - -
1075J HIS* 1.3 80.2 - - - +
1077J ALA* 1.3 61.8 + - - +
1079J LYS* 3.1 16.5 - - - +
1080J GLY* 3.0 17.8 + - - -
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Residues in contact with ALA1077 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
554I ASP* 5.5 2.7 - - - +
555I ALA* 4.5 20.4 - - + -
556I ASN* 4.9 14.9 - - - +
1042J ARG* 5.9 3.8 - - - +
1073J SER* 2.8 21.6 + - - +
1074J SER 4.0 2.0 - - - +
1076J GLY* 1.3 68.8 - - - +
1078J ARG* 1.3 59.2 - - - +
1080J GLY* 2.7 23.6 + - - +
1081J GLY* 3.0 10.7 + - - -
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Residues in contact with ARG1078 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
428I ARG 3.3 23.8 + - - -
429I ASP* 4.4 1.9 + - - +
430I VAL* 3.6 29.5 - - + +
439I CYS 3.8 12.9 + - - -
440I PRO 3.0 29.3 + - - +
441I VAL* 3.5 19.2 + - + -
443I THR* 3.6 11.9 - - - +
449I ILE* 3.8 26.6 - - - +
450I GLY* 3.8 16.7 - - - -
453I THR* 4.0 15.2 + - - +
555I ALA* 6.1 2.0 - - + -
559I LEU* 4.8 4.5 - - + -
1074J SER* 3.0 21.8 + - - +
1075J HIS 4.0 1.3 - - - +
1077J ALA* 1.3 72.3 - - + +
1079J LYS* 1.3 66.1 + - - +
1081J GLY* 3.2 3.3 + - - +
1082J ALA* 3.1 21.5 + - - +
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Residues in contact with LYS1079 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
425I PHE* 3.8 26.0 - - + +
429I ASP* 3.5 20.5 + - - +
1046J GLN* 3.3 30.3 - - - +
1047J LYS 4.3 0.2 - - - -
1048J PRO* 3.0 38.8 + - - -
1049J SER 5.3 0.6 - - - -
1050J GLY* 4.9 2.1 - - - +
1075J HIS 3.1 12.1 + - - +
1076J GLY* 3.1 12.8 - - - +
1078J ARG* 1.3 78.5 - - - +
1080J GLY* 1.3 61.6 + - - +
1082J ALA* 3.2 4.3 + - - +
1083J ASP* 2.8 45.8 + - - +
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Residues in contact with GLY1080 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1076J GLY 3.0 9.3 + - - -
1077J ALA* 2.7 14.2 + - - -
1079J LYS* 1.3 73.6 - - - +
1081J GLY* 1.3 59.3 + - - -
1083J ASP* 3.1 13.3 - - - +
1084J THR* 3.0 27.9 + - - +
1237J THR* 5.0 1.0 - - - +
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Residues in contact with GLY1081 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
449I ILE* 4.0 18.6 - - - +
556I ASN* 5.6 5.8 - - - -
1077J ALA 3.0 12.0 + - - -
1078J ARG* 3.2 3.3 + - - -
1080J GLY* 1.3 74.7 - - - +
1082J ALA* 1.3 64.2 + - - +
1084J THR* 2.6 23.6 + - - -
1085J ALA* 3.1 11.1 + - - +
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Residues in contact with ALA1082 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
428I ARG* 4.7 20.6 - - + +
449I ILE* 4.3 26.1 - - + +
1078J ARG 3.1 12.6 + - - +
1079J LYS* 3.7 9.2 - - - +
1081J GLY* 1.3 73.5 - - - +
1083J ASP* 1.3 68.4 - - - +
1085J ALA* 3.2 8.4 + - - +
1086J LEU* 3.1 21.8 + - - +
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Residues in contact with ASP1083 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
425I PHE* 3.2 36.8 - - - -
1079J LYS* 2.8 31.9 - - - +
1080J GLY* 3.1 12.6 - - - +
1082J ALA* 1.3 79.4 - - - +
1084J THR* 1.3 64.7 + - - +
1086J LEU* 3.2 4.0 + - - +
1087J ARG* 3.0 30.7 + - - +
1237J THR* 4.1 16.3 - - + +
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Residues in contact with THR1084 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1080J GLY 3.0 11.5 + - - +
1081J GLY* 2.6 25.5 + - - -
1083J ASP* 1.3 78.1 - - - +
1085J ALA* 1.3 62.7 + - - +
1087J ARG* 3.3 3.8 + - - +
1088J THR* 3.0 27.1 + - - +
1234J THR* 5.3 7.6 - - - +
1237J THR* 3.3 32.8 - - + +
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Residues in contact with ALA1085 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
445I GLU 5.8 0.4 - - - +
446I GLY 4.5 17.0 - - - +
447I ALA* 4.6 13.9 - - + -
449I ILE* 5.1 3.1 - - + -
1081J GLY 3.1 12.0 + - - +
1082J ALA* 3.2 11.0 + - - +
1084J THR* 1.3 75.4 + - - +
1086J LEU* 1.3 57.7 + - - +
1088J THR* 2.2 44.0 + - - -
1089J ALA* 3.2 2.6 + - - +
11S G 4.4 3.7 - - - +
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Residues in contact with LEU1086 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
423I ALA 4.9 3.4 - - - +
424I GLY 6.3 0.4 - - - -
425I PHE* 6.2 4.0 - - + -
428I ARG* 3.3 32.1 - - - +
1082J ALA 3.1 9.4 + - - +
1083J ASP* 3.9 6.1 - - - +
1085J ALA* 1.3 78.3 - - - +
1087J ARG* 1.3 64.1 + - + +
1089J ALA* 3.0 24.5 + - + +
1090J ASP* 3.0 30.6 + - - +
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Residues in contact with ARG1087 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1083J ASP* 3.0 17.6 + - - +
1084J THR* 3.5 7.2 - - - +
1086J LEU* 1.3 76.4 - - + +
1088J THR* 1.3 60.5 + - - +
1090J ASP* 3.2 13.0 + - - +
1091J SER* 2.9 26.0 + - - -
1233J GLY 4.2 5.9 - - - +
1234J THR* 5.6 3.4 - - - +
1236J LEU 2.9 29.4 + - - +
1237J THR* 3.5 39.0 + - - +
1254J GLN 4.5 0.8 + - - -
1255J GLY* 4.3 4.2 - - - -
1256J LEU* 3.4 23.4 - - + +
1257J PRO* 3.3 37.6 - - - +
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Residues in contact with THR1088 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1084J THR* 3.0 22.6 + - - +
1085J ALA* 2.2 33.8 + - - +
1087J ARG* 1.3 70.6 - - - +
1089J ALA* 1.3 66.2 + - - -
1091J SER* 2.9 19.3 + - - -
1092J GLY* 3.0 10.4 + - - -
1233J GLY 5.1 1.1 - - - -
1234J THR* 3.7 32.7 - - + +
11S G 2.9 35.7 + - + +
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Residues in contact with ALA1089 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1085J ALA 4.4 1.8 - - - +
1086J LEU* 3.0 22.3 + - + +
1088J THR* 1.3 82.3 + - - +
1090J ASP* 1.3 63.4 + - - +
1092J GLY 3.0 11.3 + - - -
1093J TYR* 3.1 11.4 + - - +
10S A 4.5 1.7 - - - +
11S G 3.4 47.1 - - + +
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Residues in contact with ASP1090 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1086J LEU* 3.0 38.5 + - - +
1087J ARG* 3.4 11.4 - - - +
1089J ALA* 1.3 75.7 - - - +
1091J SER* 1.3 62.4 + - - +
1093J TYR* 3.1 16.9 - - + +
1094J LEU* 3.0 23.6 + - - +
1256J LEU* 3.5 20.0 - - + -
1260J ILE* 4.3 15.6 - - + +
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Residues in contact with SER1091 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1087J ARG 2.9 7.2 + - - -
1088J THR* 2.9 14.2 + - - -
1090J ASP* 1.3 72.0 - - - +
1092J GLY* 1.3 68.0 + - - +
1094J LEU* 3.2 8.0 + - - +
1095J THR* 2.8 28.8 + - - -
1230J GLY 3.9 8.1 + - - -
1233J GLY* 3.4 42.9 - - - -
1234J THR* 4.1 4.7 + - - -
1256J LEU* 4.3 4.9 - - - +
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Residues in contact with GLY1092 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1035I MET* 6.2 3.4 - - - -
1088J THR 3.0 7.0 + - - -
1089J ALA 3.0 5.0 + - - -
1091J SER* 1.3 77.7 + - - +
1093J TYR* 1.3 65.0 + - - +
1095J THR* 3.3 4.9 + - - -
1096J ARG* 3.0 23.4 + - - +
11S G 3.4 30.2 - - - +
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Residues in contact with TYR1093 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1089J ALA 3.1 8.7 + - - +
1090J ASP* 3.1 21.5 - - - +
1092J GLY* 1.3 75.8 - - - +
1094J LEU* 1.3 83.3 + - + +
1096J ARG* 3.3 4.2 + - - +
1097J LYS* 2.5 71.1 + - + +
1260J ILE* 4.2 26.7 - - + -
1264J GLU* 4.6 1.8 + - - -
1266J ARG* 3.0 24.1 + - - -
1441J GLN* 5.5 0.4 - - - -
9S G 5.9 3.6 - - - -
10S A 3.4 42.6 - - - -
11S G 3.4 6.6 - - - -
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Residues in contact with LEU1094 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1090J ASP 3.0 6.9 + - - +
1091J SER* 3.3 11.4 - - - +
1093J TYR* 1.3 92.9 - - + +
1095J THR* 1.3 65.3 - - - +
1097J LYS* 3.1 7.8 + - + +
1098J LEU* 2.9 57.3 + - + +
1256J LEU* 4.2 13.5 - - + -
1259J VAL* 4.8 8.5 - - + -
1260J ILE* 3.5 41.3 - - + -
1263J PHE* 4.3 15.9 - - + -
1424J VAL* 6.0 0.2 - - + -
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Residues in contact with THR1095 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1035I MET* 6.4 0.4 - - + -
1038I TRP* 4.7 9.6 - - + -
708J LEU* 6.1 0.7 - - - +
1091J SER* 2.8 21.3 + - - -
1092J GLY* 3.8 5.2 - - - -
1094J LEU* 1.3 75.4 - - - +
1096J ARG* 1.3 64.7 + - - +
1098J LEU* 2.9 19.9 + - - +
1099J VAL* 2.9 27.3 + - + +
1226J ALA 4.2 10.3 - - - +
1227J GLU* 5.1 4.5 - - + -
1230J GLY* 3.9 34.8 + - - -
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Residues in contact with ARG1096 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1034I GLU* 2.7 43.7 + - - -
1038I TRP* 3.4 28.3 - - + -
615J ARG* 3.0 39.4 - - - +
619J LEU* 4.7 0.6 - - - +
1092J GLY 3.0 16.7 + - - +
1093J TYR* 3.7 4.7 - - - +
1095J THR* 1.3 74.8 - - - +
1097J LYS* 1.3 65.2 + - + +
1099J VAL* 2.9 13.9 + - - +
1100J ASP* 3.0 17.2 + - - +
1439J SER 3.1 20.2 + - - -
1440J PHE* 2.7 42.8 + - + +
1463J LYS* 5.8 0.2 - - - -
10S A 3.9 7.5 + - - -
11S G 5.7 3.1 - - - -
12S T 4.8 4.5 - - - -
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Residues in contact with LYS1097 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1093J TYR* 2.5 65.6 + - + +
1094J LEU* 3.1 9.2 + - + +
1096J ARG* 1.3 78.8 - - + +
1098J LEU* 1.3 63.0 + - + +
1100J ASP* 3.0 20.3 + - - +
1101J VAL* 3.6 9.4 + - - +
1264J GLU* 4.0 5.9 + - - +
1266J ARG* 4.2 5.1 - - - +
1424J VAL* 4.7 9.7 - - + +
1425J THR* 2.7 38.9 + - - +
1428J ALA* 4.7 3.7 - - - +
1440J PHE* 3.5 38.1 - - + -
1441J GLN* 4.2 8.9 + - - +
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Residues in contact with LEU1098 (chain J).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1094J LEU* 2.9 34.6 + - + +
1095J THR* 2.9 13.1 + - - +
1097J LYS* 1.3 79.0 - - + +
1099J VAL* 1.3 62.0 + - - +
1100J ASP 3.0 0.2 - - - -
1101J VAL* 3.1 21.8 + - - +
1102J ALA* 3.7 8.5 + - - +
1103J HIS 4.7 0.3 + - - -
1222J GLY 5.5 0.9 - - - +
1226J ALA* 4.6 16.6 - - + +
1229J ILE* 3.6 37.2 - - + -
1230J GLY* 5.9 0.7 - - - -
1263J PHE* 3.5 34.5 - - + -
1371J VAL* 4.3 8.7 - - + +
1424J VAL* 4.1 14.4 - - + -
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Residues in contact with VAL1099 (chain J).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1038I TRP* 3.5 62.4 - - + +
1095J THR* 2.9 19.7 + - + +
1096J ARG 2.9 5.8 + - - +
1098J LEU* 1.3 75.8 - - - +
1100J ASP* 1.3 58.7 + - - +
1101J VAL 3.4 0.4 - - - -
1103J HIS* 3.1 26.7 - - + +
1222J GLY 6.3 0.7 - - - -
1223J VAL* 4.6 16.4 - - + -
1226J ALA* 3.6 23.8 - - + -
1227J GLU* 6.0 1.3 - - + -
1462J LEU* 5.2 2.5 - - + -
1463J LYS* 3.7 6.1 - - - +
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Residues in contact with ASP1100 (chain J).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1038I TRP* 5.7 0.3 - - - -
1096J ARG* 3.0 13.8 + - - +
1097J LYS 3.0 11.7 + - - +
1099J VAL* 1.3 77.9 - - - +
1101J VAL* 1.3 56.5 + - - +
1103J HIS* 3.3 15.9 + - - -
1428J ALA* 3.3 26.6 - - + +
1431J THR* 5.2 1.7 - - - -
1436J SER* 2.8 38.1 + - - +
1437J ALA 4.2 0.3 + - - -
1440J PHE* 3.2 38.0 - - + +
1463J LYS* 3.2 23.9 + - - -
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il