Contacts of the helix formed by residues 518 - 580 (chain A) in PDB entry 4YKN
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with GLU 518 (chain A).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
516A GLY* 3.6 8.5 - - - +
517A ASN* 1.3 77.7 - - - +
519A LYS* 1.3 59.4 + - - +
520A GLU 3.5 1.4 - - - +
521A ILE* 4.0 29.9 - - + +
522A GLN* 3.6 19.4 + - - +
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Residues in contact with LYS 519 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
517A ASN* 2.7 20.5 + - - +
518A GLU* 1.3 72.2 - - - +
520A GLU* 1.3 63.6 + - + +
521A ILE 3.3 0.2 - - - -
522A GLN* 3.4 4.9 + - - +
523A ARG* 3.1 34.9 + - - +
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Residues in contact with GLU 520 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
512A PHE* 3.6 38.3 - - + -
517A ASN* 3.3 23.3 + - - +
519A LYS* 1.3 76.5 - - + +
521A ILE* 1.3 65.0 + - - +
523A ARG* 2.7 41.7 + - - +
524A ILE* 3.0 28.6 + - - +
1057A PRO* 4.2 9.0 - - - +
1058A LEU* 5.5 0.9 + - - +
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Residues in contact with ILE 521 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
509A ILE* 4.0 26.7 - - + +
512A PHE* 3.6 23.6 - - + +
513A LYS* 3.7 36.6 - - + +
516A GLY* 6.3 0.2 - - - -
518A GLU* 4.0 22.6 - - + +
519A LYS 3.3 0.4 - - - -
520A GLU* 1.3 78.4 - - - +
522A GLN* 1.3 58.0 + - - +
524A ILE* 3.3 4.9 + - - +
525A MET* 2.9 43.3 + - + +
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Residues in contact with GLN 522 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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518A GLU 3.6 17.4 + - - +
519A LYS* 3.4 6.8 + - - +
520A GLU 3.3 0.4 - - - -
521A ILE* 1.3 80.9 - - - +
523A ARG* 1.3 53.8 + - + +
525A MET* 3.6 4.4 - - - +
526A HIS* 2.7 37.7 + - - +
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Residues in contact with ARG 523 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
519A LYS* 3.1 21.4 + - - +
520A GLU* 2.7 48.2 + - - +
521A ILE 3.3 0.2 - - - -
522A GLN* 1.3 76.4 - - + +
524A ILE* 1.3 62.3 + - - +
526A HIS* 3.4 9.2 + - - +
527A ASN* 3.1 22.0 + - - +
1054A ARG 5.4 0.2 + - - -
1055A LYS 3.0 29.3 + - - -
1056A TYR* 3.4 18.2 + - - +
1057A PRO* 3.4 34.8 - - + +
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Residues in contact with ILE 524 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
501A GLN* 3.8 21.7 + - - +
505A SER* 3.9 14.6 - - - -
508A TYR* 4.4 5.8 - - + -
509A ILE* 4.1 20.4 - - + -
512A PHE* 3.8 20.9 - - + -
520A GLU 3.0 22.1 + - - +
521A ILE* 3.7 3.8 - - - +
523A ARG* 1.3 75.9 - - - +
525A MET* 1.3 58.9 + - + +
527A ASN* 3.1 7.9 + - - +
528A TYR* 2.9 24.9 + - - +
1030A MET* 4.9 7.3 - - + +
1057A PRO* 3.8 22.2 - - + -
1058A LEU* 3.7 28.0 - - + -
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Residues in contact with MET 525 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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501A GLN* 4.5 4.3 - - - +
505A SER* 4.9 2.2 - - - -
509A ILE* 3.7 26.5 - - + -
521A ILE* 2.9 35.9 + - + +
522A GLN* 4.1 4.3 - - - +
524A ILE* 1.3 77.7 - - + +
526A HIS* 1.3 57.5 + - - +
528A TYR* 3.8 30.6 - - + +
529A ASP* 2.9 40.2 + - - +
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Residues in contact with HIS 526 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
522A GLN 2.7 23.4 + - - +
523A ARG* 3.5 10.1 - - - +
524A ILE 3.1 0.2 - - - -
525A MET* 1.3 73.8 - - - +
527A ASN* 1.3 63.4 + - + +
529A ASP* 3.5 11.4 + - - +
530A LYS* 3.4 50.6 + - + +
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Residues in contact with ASN 527 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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501A GLN* 5.7 1.0 - - - +
523A ARG 3.1 11.8 + - - +
524A ILE 3.1 8.1 + - - +
526A HIS* 1.3 79.3 - - + +
528A TYR* 1.3 59.5 + - - +
530A LYS* 3.3 14.2 + - - +
531A LEU* 3.0 25.5 + - - +
1029A GLY 4.2 2.4 - - - +
1030A MET* 3.3 27.9 - - + +
1031A ILE* 2.8 53.8 + - - +
1056A TYR* 3.7 20.2 - - - -
1057A PRO* 5.3 2.0 - - + -
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Residues in contact with TYR 528 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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498A CYS* 5.5 10.3 - - + -
501A GLN* 3.2 45.9 - - + +
502A GLU* 6.0 3.6 - - + -
524A ILE 2.9 11.0 + - - +
525A MET* 3.8 25.4 - - + +
526A HIS 3.3 0.2 - - - -
527A ASN* 1.3 75.0 - - - +
529A ASP* 1.3 70.6 + - - +
531A LEU* 3.7 8.6 - - + +
532A LYS* 2.9 57.9 + - + +
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Residues in contact with ASP 529 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
525A MET* 2.9 29.1 + - - +
526A HIS* 3.5 10.6 + - - +
528A TYR* 1.3 89.2 - - - +
530A LYS* 1.3 59.8 + - + +
532A LYS* 3.6 3.3 + - - +
533A SER* 3.0 30.5 + - - -
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Residues in contact with LYS 530 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
526A HIS* 3.4 41.3 + - + +
527A ASN* 3.3 20.7 + - - +
528A TYR 3.2 0.4 - - - -
529A ASP* 1.3 74.5 - - + +
531A LEU* 1.3 60.1 + - - +
533A SER* 3.4 5.8 + - - -
534A ARG* 2.9 30.9 + - - +
1023A GLU* 5.9 2.7 - - - +
1031A ILE* 4.7 10.1 - - + -
1033A THR* 5.2 8.8 + - - +
1056A TYR* 5.2 10.0 + - - -
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Residues in contact with LEU 531 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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494A PHE* 3.8 31.0 - - + -
497A GLN* 3.8 40.6 - - + +
498A CYS* 4.1 22.7 - - - -
501A GLN* 4.2 10.8 - - + -
527A ASN* 3.0 16.7 + - - +
528A TYR* 3.3 8.7 + - + +
530A LYS* 1.3 76.4 - - - +
532A LYS* 1.3 63.2 + - + +
534A ARG* 3.2 3.8 + - - +
535A ILE* 3.0 23.0 + - + +
1029A GLY 4.1 11.9 - - - +
1031A ILE* 3.9 20.1 - - + +
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Residues in contact with LYS 532 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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498A CYS* 5.0 9.4 - - - -
528A TYR* 2.9 63.4 + - + +
529A ASP* 4.1 3.8 - - - +
531A LEU* 1.3 73.5 - - - +
533A SER* 1.3 60.9 + - - +
535A ILE* 3.2 17.3 - - + +
536A SER* 3.0 22.9 + - - -
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Residues in contact with SER 533 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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529A ASP 3.0 20.5 + - - -
530A LYS* 3.8 6.1 - - - -
532A LYS* 1.3 74.7 - - - +
534A ARG* 1.3 64.8 + - - +
536A SER* 3.6 5.3 + - - -
537A GLU* 3.4 19.6 + - - +
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Residues in contact with ARG 534 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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494A PHE* 3.9 27.6 - - + -
530A LYS 2.9 18.6 + - - +
531A LEU* 3.6 7.0 - - - +
533A SER* 1.3 74.6 - - - +
535A ILE* 1.3 65.6 + - - +
537A GLU* 3.1 17.4 + - - +
538A ILE* 3.3 24.1 + - + +
1023A GLU* 2.5 43.2 + - + +
1031A ILE* 4.6 4.3 - - + -
1033A THR* 5.0 1.6 + - - -
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Residues in contact with ILE 535 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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491A ILE* 4.5 4.9 - - + +
494A PHE* 3.7 47.5 - - + +
495A GLU* 3.7 19.3 - - + +
498A CYS* 4.0 16.4 - - - -
531A LEU 3.0 15.2 + - - +
532A LYS* 3.2 20.6 - - + +
534A ARG* 1.3 76.9 - - - +
536A SER* 1.3 66.7 + - - +
538A ILE* 3.4 11.8 + - + +
539A ILE* 3.1 39.2 + - + +
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Residues in contact with SER 536 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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532A LYS 3.0 16.8 + - - -
533A SER* 3.9 6.7 - - - -
534A ARG 3.2 0.8 - - - -
535A ILE* 1.3 79.9 - - - +
537A GLU* 1.3 60.3 + - - +
539A ILE* 3.3 9.0 + - - +
540A ASP* 2.9 38.8 + - - +
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Residues in contact with GLU 537 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
533A SER 3.4 9.8 + - - +
534A ARG* 3.1 13.7 + - - +
536A SER* 1.3 78.7 - - - +
538A ILE* 1.3 58.4 + - + +
540A ASP* 3.5 9.0 + - - +
541A SER* 3.0 31.4 + - - +
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Residues in contact with ILE 538 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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487A PHE* 3.7 21.0 - - + -
490A THR* 3.9 17.3 - - + -
491A ILE* 3.5 23.8 - - + -
494A PHE* 3.9 40.8 - - + -
534A ARG* 3.3 21.5 + - + +
535A ILE* 3.8 7.4 - - - +
536A SER 3.2 0.6 - - - -
537A GLU* 1.3 77.3 - - + +
539A ILE* 1.3 59.3 + - - +
541A SER* 3.1 6.3 + - - -
542A ARG* 2.9 28.4 + - - +
1096A GLN* 4.8 13.0 - - + +
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Residues in contact with ILE 539 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
491A ILE* 3.8 33.4 - - + -
495A GLU* 4.9 5.6 - - - +
535A ILE* 3.1 32.2 + - + +
536A SER* 3.8 7.9 - - - +
538A ILE* 1.3 75.2 - - - +
540A ASP* 1.3 63.9 + - - +
542A ARG* 3.4 15.4 + - - +
543A ARG* 3.0 45.9 + - - +
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Residues in contact with ASP 540 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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536A SER* 2.9 25.6 + - - +
537A GLU* 3.7 8.9 - - - +
539A ILE* 1.3 77.8 - - - +
541A SER* 1.3 55.8 + - - +
543A ARG* 2.7 34.1 + - - +
544A ARG* 2.9 29.5 + - - +
----------------------------------------------------------
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Residues in contact with SER 541 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
487A PHE* 3.6 25.1 - - - -
537A GLU 3.0 19.8 + - - -
538A ILE* 3.1 6.5 + - - -
540A ASP* 1.3 77.6 - - - +
542A ARG* 1.3 62.0 + - - +
544A ARG* 3.4 8.5 + - - +
545A LEU* 3.0 22.5 + - - +
1096A GLN* 5.6 1.2 + - - -
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Residues in contact with ARG 542 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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484A ILE* 4.4 7.2 - - + -
487A PHE* 3.9 31.1 - - + -
488A ASN* 2.9 36.6 + - - +
491A ILE* 3.5 36.1 - - + +
495A GLU* 5.8 0.6 + - - -
538A ILE 2.9 16.2 + - - +
539A ILE* 3.8 18.9 + - - +
541A SER* 1.3 73.9 - - - +
543A ARG* 1.3 60.8 + - - +
545A LEU* 3.0 4.0 + - - +
546A GLU* 2.8 52.0 + - + +
----------------------------------------------------------
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Residues in contact with ARG 543 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
539A ILE* 3.0 31.5 + - + +
540A ASP* 2.7 37.0 + - - +
542A ARG* 1.3 77.2 - - - +
544A ARG* 1.3 62.3 + - - +
546A GLU* 3.4 16.1 + - - +
547A GLU* 3.2 22.5 + - - +
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Residues in contact with ARG 544 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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540A ASP 2.9 19.1 + - - +
541A SER* 3.7 8.3 - - - +
542A ARG 3.2 0.2 - - - -
543A ARG* 1.3 77.1 - - - +
545A LEU* 1.3 60.6 + - - +
547A GLU* 3.7 4.7 + - - +
548A ASP* 3.2 35.4 + - - +
----------------------------------------------------------
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Residues in contact with LEU 545 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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480A LYS* 4.2 31.4 - - + +
483A ALA* 3.6 29.8 - - + -
484A ILE* 3.6 23.1 - - + -
487A PHE* 3.9 17.0 - - + -
541A SER 3.0 17.2 + - - +
542A ARG* 3.0 4.5 + - - +
544A ARG* 1.3 75.6 - - - +
546A GLU* 1.3 60.0 + - - +
547A GLU 3.2 0.4 - - - -
548A ASP* 3.3 10.2 + - + +
549A LEU* 2.9 27.4 + - - +
1011A TRP* 4.6 13.2 - - + -
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Residues in contact with GLU 546 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
484A ILE* 3.6 25.0 - - + +
488A ASN* 5.0 0.7 - - - +
542A ARG* 2.8 48.9 + - - +
543A ARG* 3.4 13.9 + - - +
545A LEU* 1.3 72.7 - - - +
547A GLU* 1.3 56.9 + - - +
549A LEU* 3.3 7.9 + - + +
550A LYS* 2.8 28.6 + - - +
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Residues in contact with GLU 547 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
543A ARG 3.2 13.7 + - - +
544A ARG* 4.0 6.1 - - - +
545A LEU 3.2 0.2 - - - -
546A GLU* 1.3 77.2 - - - +
548A ASP* 1.3 61.2 + - - +
550A LYS* 3.2 9.0 + - - +
551A LYS* 2.9 33.7 + - + +
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Residues in contact with ASP 548 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
480A LYS* 3.6 19.6 + - - +
544A ARG* 3.2 30.0 + - - +
545A LEU* 3.3 17.8 + - + +
547A GLU* 1.3 77.7 - - - +
549A LEU* 1.3 57.1 + - - +
551A LYS* 3.4 14.3 + - - +
552A GLN* 3.0 28.8 + - - +
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Residues in contact with LEU 549 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
477A ILE* 3.8 36.8 - - + +
480A LYS* 4.2 27.3 - - + +
481A ARG* 4.0 30.7 - - + +
484A ILE* 4.6 16.8 - - + -
545A LEU 2.9 14.5 + - - +
546A GLU* 3.6 10.5 - - + +
548A ASP* 1.3 74.3 - - - +
550A LYS* 1.3 60.3 + - - +
552A GLN* 3.1 1.6 + - + +
553A ALA* 2.8 35.5 + - + +
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Residues in contact with LYS 550 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
546A GLU 2.8 17.6 + - - +
547A GLU* 3.5 9.4 - - - +
549A LEU* 1.3 77.0 - - - +
551A LYS* 1.3 62.4 + - + +
553A ALA* 3.9 6.5 - - - +
554A ALA* 3.4 21.3 + - - +
557A ARG* 5.4 0.2 + - - -
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Residues in contact with LYS 551 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
547A GLU* 2.9 19.6 + - + +
548A ASP* 3.6 13.9 - - - +
549A LEU 3.2 0.2 - - - -
550A LYS* 1.3 76.9 - - + +
552A GLN* 1.3 62.6 + - - +
554A ALA* 3.2 8.9 + - - +
555A GLU* 3.1 20.0 + - - +
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Residues in contact with GLN 552 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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472A ARG* 4.6 4.2 - - - +
473A THR* 3.7 23.6 + - + +
476A GLU* 2.8 42.0 + - - +
477A ILE* 3.8 15.0 - - + +
480A LYS* 3.2 31.7 + - - +
548A ASP 3.0 17.1 + - - +
549A LEU* 4.0 3.1 - - - +
551A LYS* 1.3 74.6 - - - +
553A ALA* 1.3 60.6 + - - +
555A GLU* 3.3 9.0 + - + +
556A TYR* 2.9 26.7 + - - +
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Residues in contact with ALA 553 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
477A ILE* 4.0 16.2 - - + +
481A ARG* 4.9 12.8 - - - +
549A LEU* 2.8 21.4 + - + +
550A LYS* 3.9 6.5 - - - +
552A GLN* 1.3 77.9 - - - +
554A ALA* 1.3 62.9 + - - +
556A TYR* 3.0 13.5 + - - +
557A ARG* 3.1 34.8 + - - +
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Residues in contact with ALA 554 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
550A LYS 3.4 10.3 + - - +
551A LYS* 3.2 10.6 + - - +
553A ALA* 1.3 78.0 - - - +
555A GLU* 1.3 62.0 + - - +
557A ARG* 3.4 22.8 + - - +
558A GLU* 3.2 28.0 + - + +
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Residues in contact with GLU 555 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
473A THR* 5.2 2.2 - - + +
551A LYS 3.1 13.6 + - - +
552A GLN* 3.5 15.0 - - + +
553A ALA 3.2 0.2 - - - -
554A ALA* 1.3 74.8 - - - +
556A TYR* 1.3 64.1 + - - +
558A GLU* 3.4 8.2 + - - +
559A ILE* 3.1 35.4 + - + +
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Residues in contact with TYR 556 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
470A TYR* 2.7 60.9 + + - -
473A THR* 3.9 14.5 - - + +
474A SER* 4.1 23.1 + - - -
477A ILE* 3.8 15.9 - - + -
552A GLN 2.9 13.4 + - - +
553A ALA* 3.0 10.5 + - - +
555A GLU* 1.3 76.8 - - - +
557A ARG* 1.3 64.5 + - + +
559A ILE* 3.4 7.3 + - - +
560A ASP* 2.9 29.0 + - - +
1343A TYR* 6.2 0.4 - - - -
1345A ASN* 4.6 11.4 - - - -
1447A PRO* 4.4 9.0 - - - +
1470A THR* 6.1 2.8 - - + +
----------------------------------------------------------
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Residues in contact with ARG 557 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
550A LYS 5.4 0.6 + - - -
553A ALA* 3.1 23.2 + - - +
554A ALA* 3.5 33.7 - - - +
555A GLU 3.3 0.2 - - - -
556A TYR* 1.3 80.7 - - + +
558A GLU* 1.3 60.0 + - + +
560A ASP* 3.1 2.8 + - - +
561A LYS* 2.8 39.9 + - - +
1343A TYR* 4.4 19.5 + - + +
1345A ASN* 3.4 37.7 - - + +
1469A GLU* 5.3 8.7 + - - -
----------------------------------------------------------
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Residues in contact with GLU 558 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
554A ALA* 3.2 14.8 + - + +
555A GLU* 3.8 9.2 - - - +
556A TYR 3.3 0.2 - - - -
557A ARG* 1.3 75.9 - - + +
559A ILE* 1.3 64.9 + - + +
561A LYS* 3.1 35.0 + - - +
562A ARG* 2.9 31.2 + - + +
----------------------------------------------------------
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Residues in contact with ILE 559 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
466A LEU* 3.8 35.9 - - + +
469A GLU* 3.7 39.7 - - + +
470A TYR* 3.8 19.7 - - + -
473A THR* 3.8 17.9 - - + +
555A GLU* 3.1 24.0 + - + +
556A TYR* 3.6 7.0 - - + +
558A GLU* 1.3 75.3 - - + +
560A ASP* 1.3 63.7 + - - +
562A ARG* 3.3 7.8 + - - +
563A MET* 3.1 27.0 + - - +
----------------------------------------------------------
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Residues in contact with ASP 560 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
470A TYR* 3.9 27.8 + - + -
556A TYR* 2.9 20.0 + - + +
557A ARG 3.1 9.6 + - - +
559A ILE* 1.3 79.0 - - - +
561A LYS* 1.3 60.9 + - - +
563A MET* 3.5 5.4 + - - +
564A ASN* 3.0 44.7 + - - +
1345A ASN* 3.0 30.9 + - + +
1422A LEU 5.7 1.4 - - - +
----------------------------------------------------------
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Residues in contact with LYS 561 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
557A ARG* 2.8 23.5 + - - +
558A GLU* 3.1 35.2 + - - +
560A ASP* 1.3 73.4 - - - +
562A ARG* 1.3 65.2 + - + +
564A ASN* 3.2 4.3 + - - +
565A SER* 3.1 26.4 + - - -
1344A VAL 5.1 1.8 - - - -
1345A ASN* 3.6 18.6 - - - +
1346A VAL* 3.4 45.4 + - - +
1347A ASN* 4.3 9.6 + - + +
----------------------------------------------------------
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Residues in contact with ARG 562 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
462A GLU* 5.5 4.9 - - - -
466A LEU* 3.8 32.8 - - + -
558A GLU* 2.9 19.9 + - - +
559A ILE* 3.3 5.4 + - - +
561A LYS* 1.3 75.6 - - + +
563A MET* 1.3 63.7 + - - +
565A SER* 3.3 6.4 + - - -
566A ILE* 3.2 29.0 + - + +
----------------------------------------------------------
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Residues in contact with MET 563 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
463A TYR* 3.5 42.5 - - + +
466A LEU* 3.7 26.9 - - + +
467A TYR* 3.8 32.8 - - + +
470A TYR* 3.8 38.6 - - + -
559A ILE* 3.1 15.9 + - - +
560A ASP* 4.0 6.1 - - - +
562A ARG* 1.3 75.9 - - - +
564A ASN* 1.3 60.8 + - - +
566A ILE* 4.0 1.0 - - - +
567A LYS* 3.1 37.8 + - - +
----------------------------------------------------------
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Residues in contact with ASN 564 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
560A ASP* 3.0 38.3 + - - +
561A LYS* 3.2 5.1 + - - +
563A MET* 1.3 80.2 - - - +
565A SER* 1.3 57.0 + - - +
567A LYS* 4.3 18.4 - - - +
568A PRO* 3.1 22.9 - - - +
1345A ASN 2.6 28.3 + - - +
1346A VAL* 4.8 4.9 - - + -
1347A ASN 6.0 0.4 - - - +
1408A SER* 5.0 2.0 + - - +
1420A CYS* 3.9 7.3 - - - -
1422A LEU* 3.3 37.9 + - + +
----------------------------------------------------------
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Residues in contact with SER 565 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
561A LYS 3.1 12.9 + - - -
562A ARG* 3.8 9.6 - - - -
563A MET 3.3 0.2 - - - -
564A ASN* 1.3 77.6 - - - +
566A ILE* 1.3 64.2 + - - +
568A PRO* 3.5 9.0 - - - +
569A ASP* 3.3 19.6 - - - +
1347A ASN* 3.9 23.7 + - - +
1351A ILE* 5.0 6.8 + - - +
----------------------------------------------------------
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Residues in contact with ILE 566 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
459A LYS* 4.0 34.8 - - + +
462A GLU* 3.7 36.6 - - + +
463A TYR* 4.2 16.6 - - + +
466A LEU* 3.8 18.6 - - + -
562A ARG* 3.2 18.6 + - + +
563A MET* 3.4 3.8 + - - +
565A SER* 1.3 77.5 - - - +
567A LYS* 1.3 57.2 + - - +
569A ASP* 3.1 6.6 + - - +
570A LEU* 2.6 46.1 + - + +
----------------------------------------------------------
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Residues in contact with LYS 567 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
463A TYR* 3.3 34.9 + - + -
563A MET* 3.1 23.3 + - - +
564A ASN* 4.3 18.2 - - - +
566A ILE* 1.3 75.4 - - - +
568A PRO* 1.3 71.2 - - + +
570A LEU* 3.9 5.0 - - - +
571A ILE* 3.0 37.8 + - + +
1420A CYS* 4.4 17.3 - - + -
1421A PRO* 5.6 9.0 - - + +
1448A VAL* 4.4 25.7 + - - +
1449A PRO 4.6 0.8 + - - -
1450A HIS 4.0 12.9 + - - -
1452A LEU 4.6 6.3 + - - -
----------------------------------------------------------
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Residues in contact with PRO 568 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
564A ASN 3.1 22.0 - - - +
565A SER* 3.5 11.0 - - - +
567A LYS* 1.3 93.6 - - + +
569A ASP* 1.3 64.2 + - - +
571A ILE* 3.5 8.3 + - + +
572A GLN* 3.1 23.9 + - - +
1408A SER* 5.1 2.7 - - - +
1410A LYS* 4.7 13.5 - - + -
1418A GLU* 3.6 34.8 - - + +
1419A HIS 4.9 1.8 - - - +
1420A CYS* 3.9 22.2 - - + +
----------------------------------------------------------
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Residues in contact with ASP 569 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
459A LYS* 4.5 22.6 - - - -
565A SER 3.3 16.0 - - - +
566A ILE* 3.1 7.4 + - - +
568A PRO* 1.3 78.2 - - - +
570A LEU* 1.3 61.0 + - - +
572A GLN* 3.3 5.5 + - - +
573A LEU* 2.8 33.0 + - - +
1418A GLU* 5.8 1.0 - - - +
----------------------------------------------------------
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Residues in contact with LEU 570 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
456A PHE* 3.6 29.8 - - + -
459A LYS* 3.7 13.9 - - + +
460A SER* 3.6 28.9 - - - +
463A TYR* 3.8 38.4 - - + -
566A ILE* 2.6 27.3 + - + +
567A LYS* 3.9 4.7 - - - +
569A ASP* 1.3 72.9 - - - +
571A ILE* 1.3 61.8 + - + +
573A LEU* 3.6 3.0 + - + -
574A ARG* 3.1 23.2 + - - +
----------------------------------------------------------
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Residues in contact with ILE 571 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
567A LYS* 3.0 26.0 + - + +
568A PRO* 3.8 6.5 - - + +
570A LEU* 1.3 75.9 - - + +
572A GLN* 1.3 60.4 + - - +
574A ARG* 3.2 12.0 + - - +
575A LYS* 2.9 31.3 + - + +
1419A HIS 5.1 9.4 - - - +
1420A CYS* 5.7 2.7 - - + -
1453A GLU* 3.6 57.2 - - + +
----------------------------------------------------------
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Residues in contact with GLN 572 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
568A PRO 3.1 17.4 + - - +
569A ASP* 3.3 6.3 + - - +
571A ILE* 1.3 78.4 - - - +
573A LEU* 1.3 62.8 + - - +
575A LYS* 3.3 6.0 + - - +
576A THR* 3.3 32.2 + - + +
1415A ALA 6.0 1.6 - - - +
1416A LYS* 6.5 1.3 - - + -
1418A GLU* 5.6 6.3 - - + -
----------------------------------------------------------
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Residues in contact with LEU 573 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
452A TYR* 5.3 4.0 - - - +
455A GLN* 5.2 7.4 - - + +
456A PHE* 4.2 26.4 - - + +
459A LYS* 5.6 4.3 - - + -
569A ASP 2.8 21.6 + - - +
570A LEU* 4.0 7.0 - - + +
572A GLN* 1.3 74.2 - - - +
574A ARG* 1.3 61.0 + - - +
576A THR* 3.3 16.8 + - - -
577A ARG* 3.4 10.7 + - - +
----------------------------------------------------------
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Residues in contact with ARG 574 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
456A PHE* 3.4 36.5 - - + -
570A LEU 3.1 18.4 + - - +
571A ILE* 3.7 11.4 + - - +
572A GLN 3.2 0.4 - - - -
573A LEU* 1.3 76.8 - - - +
575A LYS* 1.3 67.9 + - - +
577A ARG* 3.1 6.4 + - + +
578A ASP* 3.1 41.4 + - - +
1453A GLU* 2.8 44.0 + - - -
----------------------------------------------------------
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Residues in contact with LYS 575 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
571A ILE* 2.9 19.9 + - + +
572A GLN* 3.3 8.5 + - - +
574A ARG* 1.3 81.2 - - - +
576A THR* 1.3 63.3 + - + +
578A ASP* 3.3 9.0 + - - +
579A GLN* 3.1 19.9 + - - +
----------------------------------------------------------
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Residues in contact with THR 576 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
452A TYR* 5.1 9.7 - - - +
572A GLN* 3.3 21.7 + - + +
573A LEU* 3.3 13.6 + - - -
575A LYS* 1.3 75.3 - - + +
577A ARG* 1.3 67.2 + - - +
579A GLN* 3.2 18.1 + - - +
580A TYR* 3.5 12.1 + - - +
----------------------------------------------------------
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Residues in contact with ARG 577 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
452A TYR* 5.8 4.9 - - + +
453A ASN* 5.4 12.1 - - + +
456A PHE* 5.1 13.0 - - + -
573A LEU 3.4 11.1 + - - +
574A ARG* 3.1 14.9 + - + +
576A THR* 1.3 82.0 + - - +
578A ASP* 1.3 64.4 + - - +
580A TYR* 3.3 20.1 + - - +
----------------------------------------------------------
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Residues in contact with ASP 578 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
574A ARG* 3.1 27.5 + - - +
575A LYS* 3.3 9.6 + - - +
577A ARG* 1.3 77.7 - - - +
579A GLN* 1.3 63.7 + - - +
580A TYR 3.2 5.5 + - - -
----------------------------------------------------------
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Residues in contact with GLN 579 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
575A LYS 3.1 12.8 + - - +
576A THR* 3.5 15.5 - - - +
577A ARG 3.2 0.6 - - - -
578A ASP* 1.3 76.2 - - - +
580A TYR* 1.3 59.1 + - - +
----------------------------------------------------------
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Residues in contact with TYR 580 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
576A THR 3.5 7.2 + - - +
577A ARG* 3.3 17.1 + - - +
578A ASP 3.1 6.0 - - - +
579A GLN* 1.3 81.2 - - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il