Contacts of the helix formed by residues 1341 - 1384 (chain A) in PDB entry 4Z4Q
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with GLY1341 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1229A TYR 3.4 11.7 - - - -
1230A GLU 4.6 4.9 + - - -
1231A THR 4.5 1.2 - - - -
1232A GLY 4.0 9.9 - - - +
1329A MET* 3.7 12.8 - - - -
1340A VAL* 1.3 75.6 - - - +
1342A ILE* 1.3 67.9 + - - -
1343A VAL 2.9 5.0 + - - -
1344A PRO* 3.5 9.6 - - - +
1345A ILE* 3.4 20.5 + - - +
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Residues in contact with ILE1342 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1163A LEU* 3.7 40.2 - - + -
1201A ILE* 4.6 5.6 - - + -
1204A LEU* 3.8 30.7 - - + -
1205A MET* 6.3 0.4 - - + -
1208A LEU* 3.6 24.9 - - + -
1229A TYR* 2.9 49.0 + - + +
1329A MET* 4.0 6.3 - - + +
1341A GLY* 1.3 71.1 - - - -
1343A VAL* 1.3 61.0 + - + +
1345A ILE* 3.8 3.7 - - + +
1346A LEU* 3.1 37.5 + - + +
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Residues in contact with VAL1343 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1193A MET* 3.4 17.5 - - + +
1197A PRO 6.0 0.7 - - - +
1199A ALA 4.1 11.7 - - - +
1201A ILE* 4.1 21.1 - - + -
1204A LEU* 3.6 27.8 - - + -
1229A TYR 4.4 1.6 + - - +
1341A GLY 2.9 3.8 + - - -
1342A ILE* 1.3 73.9 - - + +
1344A PRO* 1.4 71.3 - - + +
1345A ILE 3.2 1.1 - - - -
1346A LEU* 3.4 1.3 + - - -
1347A SER* 2.8 30.3 + - - -
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Residues in contact with PRO1344 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1033A ILE* 4.1 1.8 - - - -
1338A ARG* 3.7 33.0 - - - +
1340A VAL* 3.7 21.8 - - + -
1341A GLY* 3.5 17.3 - - - +
1343A VAL* 1.4 98.1 - - + +
1345A ILE* 1.3 54.7 - - - +
1347A SER* 2.9 15.7 + - - +
1348A SER* 2.8 29.2 + - - -
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Residues in contact with ILE1345 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1033A ILE* 3.9 19.8 - - + +
1160A PRO* 6.5 0.7 - - + -
1162A LEU* 4.0 24.9 - - + -
1163A LEU* 3.9 37.7 - - + -
1178A ILE* 5.1 0.7 - - + -
1329A MET* 4.2 19.5 - - + -
1340A VAL* 3.7 26.2 - - + +
1341A GLY 3.4 22.1 + - - +
1342A ILE* 3.8 4.3 - - + +
1343A VAL 3.2 0.6 - - - -
1344A PRO* 1.3 76.5 - - - +
1346A LEU* 1.3 69.1 + - + +
1348A SER* 3.3 2.4 + - - -
1349A TYR* 3.0 23.4 + - + +
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Residues in contact with LEU1346 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1160A PRO* 5.2 7.2 - - + -
1163A LEU* 4.2 22.2 - - + -
1186A VAL* 4.4 12.3 - - + -
1189A ALA* 3.8 32.1 - - + -
1190A ALA* 4.4 19.5 - - + +
1193A MET* 3.8 25.4 - - + -
1204A LEU* 4.6 7.4 - - + -
1208A LEU* 5.4 0.4 - - + -
1342A ILE* 3.1 30.0 + - + +
1345A ILE* 1.3 81.7 - - + +
1347A SER* 1.3 63.5 + - - +
1349A TYR* 3.4 5.9 + - + +
1350A ILE* 3.0 30.7 + - + +
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Residues in contact with SER1347 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1193A MET* 3.4 16.5 - - - +
1338A ARG* 5.4 1.4 + - - -
1343A VAL* 2.8 23.0 + - - -
1344A PRO* 2.9 19.6 + - - +
1346A LEU* 1.3 72.5 - - - +
1348A SER* 1.3 63.3 + - - +
1350A ILE* 3.1 8.1 + - - +
1351A ALA* 2.8 35.4 + - - +
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Residues in contact with SER1348 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1033A ILE* 3.5 34.9 - - - +
1034A ARG* 4.3 6.9 - - - +
1333A ASP* 3.7 14.3 + - - -
1338A ARG* 4.5 2.9 + - - -
1344A PRO 2.8 19.0 + - - -
1345A ILE 3.3 3.8 + - - -
1347A SER* 1.3 82.8 + - - +
1349A TYR* 1.3 55.9 + - - +
1351A ALA* 3.6 7.6 - - - +
1352A HIS* 2.9 30.5 + - - +
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Residues in contact with TYR1349 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1033A ILE 5.2 2.6 + - - +
1034A ARG* 3.8 23.3 - - - +
1157A ALA* 2.9 34.5 + - + -
1158A ALA 3.2 19.1 + - - -
1159A PHE* 3.3 4.9 - - - -
1160A PRO* 3.5 44.0 - - + -
1190A ALA* 4.9 7.4 - - + -
1345A ILE* 3.0 18.3 + - + +
1346A LEU* 3.8 8.3 - - + +
1348A SER* 1.3 72.3 - - - +
1350A ILE* 1.3 70.7 + - + +
1352A HIS* 3.2 9.2 + + - +
1353A ARG* 2.8 50.3 + - + +
1463A MET* 5.2 0.2 - - + -
1467A LEU* 3.7 23.1 - - + +
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Residues in contact with ILE1350 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1190A ALA* 3.6 19.5 - - + +
1193A MET* 3.8 20.0 - - + -
1194A ILE* 3.4 30.3 - - + +
1346A LEU 3.0 21.8 + - - +
1347A SER* 3.5 4.5 - - - +
1349A TYR* 1.3 83.2 - - + +
1351A ALA* 1.3 63.4 + - - +
1353A ARG 3.2 0.7 + - - -
1354A ARG* 3.0 21.5 + - - +
1460A TYR* 3.7 24.7 - - + +
1463A MET* 3.2 30.9 - - + +
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Residues in contact with ALA1351 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1347A SER 2.8 20.0 + - - +
1348A SER* 3.6 9.6 - - - +
1350A ILE* 1.3 73.2 - - - +
1352A HIS* 1.3 57.9 + - - +
1354A ARG* 3.1 13.5 + - - +
1355A GLU* 3.0 29.4 + - - +
1460A TYR* 5.8 0.9 - - - -
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Residues in contact with HIS1352 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1034A ARG* 3.6 38.7 + - + +
1139A VAL* 4.2 9.4 - - + -
1154A VAL* 3.3 27.7 - - + +
1155A LEU 3.0 22.2 + - - -
1156A PRO 3.4 18.5 + - - -
1157A ALA* 4.2 10.5 - - + +
1348A SER 2.9 17.8 + - - +
1349A TYR* 3.3 7.9 - + - +
1351A ALA* 1.3 72.1 - - - +
1353A ARG* 1.3 70.1 + - - +
1355A GLU* 3.0 10.9 + - - +
1356A VAL* 2.9 40.1 + - + +
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Residues in contact with ARG1353 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1132A GLN* 4.5 9.5 + - - -
1133A ASP* 5.8 0.4 + - - -
1156A PRO* 3.1 27.0 + - - +
1157A ALA 3.3 17.3 - - - -
1158A ALA* 3.5 25.6 + - - +
1349A TYR* 2.8 48.4 + - + +
1350A ILE 3.2 0.4 + - - +
1352A HIS* 1.3 74.0 - - + +
1354A ARG* 1.3 57.0 + - - +
1356A VAL* 3.3 16.7 + - - +
1357A ILE* 2.8 53.1 + - + +
1360A ARG* 4.2 4.8 - - - +
1463A MET* 3.6 27.2 - - + +
1466A GLU* 3.3 27.7 + - - +
1467A LEU* 5.5 3.8 - - + +
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Residues in contact with ARG1354 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1350A ILE 3.0 12.7 + - - +
1351A ALA* 3.1 14.8 + - - +
1353A ARG* 1.3 76.5 - - - +
1355A GLU* 1.3 81.9 + - - +
1357A ILE* 3.9 0.7 - - - +
1358A LEU* 3.0 49.4 + - + +
1456A GLU* 2.3 35.9 + - - -
1459A MET* 3.4 29.6 - - + -
1460A TYR* 3.8 19.5 - - + +
1463A MET* 4.3 1.5 - - - -
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Residues in contact with GLU1355 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1138A THR 5.0 1.8 - - - +
1351A ALA 3.0 14.3 + - - +
1352A HIS* 3.0 15.5 + - - +
1354A ARG* 1.3 94.6 + - - +
1356A VAL* 1.3 59.3 + - + +
1358A LEU* 3.4 4.4 + - - +
1359A ALA* 3.0 29.6 + - - +
1362A ARG* 4.9 12.4 + - - -
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Residues in contact with VAL1356 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1133A ASP* 5.3 5.4 - - + +
1138A THR* 3.5 40.9 - - + +
1139A VAL* 4.9 0.2 - - + -
1156A PRO* 3.9 19.3 - - + +
1352A HIS* 2.9 47.1 + - + +
1353A ARG* 3.7 24.9 - - - +
1355A GLU* 1.3 76.6 - - + +
1357A ILE* 1.3 58.7 + - + +
1359A ALA* 3.2 0.7 + - - -
1360A ARG* 2.8 32.3 + - + +
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Residues in contact with ILE1357 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1353A ARG* 2.8 37.2 + - - +
1354A ARG 3.9 2.2 - - - +
1356A VAL* 1.3 75.0 - - + +
1358A LEU* 1.3 59.4 + - - +
1360A ARG* 3.5 27.1 + - - +
1361A SER* 2.8 35.8 + - - +
1452A ILE* 4.0 13.9 - - + -
1459A MET* 4.0 24.2 - - + +
1462A LEU* 4.3 13.5 - - + -
1463A MET* 3.6 42.6 - - + +
1466A GLU* 4.2 8.3 - - - +
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Residues in contact with LEU1358 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1354A ARG* 3.0 61.6 + - + +
1355A GLU* 3.6 7.2 - - - +
1357A ILE* 1.3 78.1 - - - +
1359A ALA* 1.3 57.2 + - - +
1361A SER* 3.1 6.1 + - - -
1362A ARG* 2.9 54.0 + - - +
1452A ILE* 3.8 9.9 - - + +
1453A ILE* 3.5 45.1 - - + +
1456A GLU* 6.0 0.7 - - - -
1459A MET* 4.5 11.2 - - + -
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Residues in contact with ALA1359 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1136A LYS 4.3 0.5 - - - +
1137A LYS 3.7 10.3 - - - +
1138A THR* 3.6 25.8 - - - +
1355A GLU* 3.0 20.0 + - - +
1356A VAL 3.6 4.0 - - - +
1358A LEU* 1.3 71.6 - - - +
1360A ARG* 1.3 67.9 + - - +
1362A ARG* 3.1 22.2 + - - +
1363A PHE* 3.0 22.7 + - - +
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Residues in contact with ARG1360 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1132A GLN* 5.2 1.8 + - - -
1133A ASP* 2.9 38.5 + - - +
1136A LYS* 4.0 18.4 - - + +
1138A THR* 3.4 15.4 - - + +
1353A ARG* 4.2 5.3 - - - +
1356A VAL* 2.8 23.8 + - + +
1357A ILE* 3.5 19.6 - - - +
1359A ALA* 1.3 72.0 - - - +
1361A SER* 1.3 72.9 + - - +
1363A PHE* 3.2 5.6 + - - +
1364A ASP* 3.0 34.4 + - - +
1452A ILE* 5.9 0.2 - - - +
1462A LEU* 3.8 17.8 - - - +
1466A GLU* 2.8 42.7 + - - -
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Residues in contact with SER1361 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1357A ILE* 2.8 24.1 + - - +
1358A LEU 3.1 4.7 + - - -
1360A ARG* 1.3 87.4 + - - +
1362A ARG* 1.3 61.2 + - - +
1364A ASP* 3.6 1.1 + - - +
1365A LYS* 3.2 25.3 + - - +
1449A LEU* 4.0 23.1 - - - +
1452A ILE* 3.8 27.5 - - - +
1453A ILE* 4.0 20.2 - - - +
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Residues in contact with ARG1362 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1355A GLU* 4.9 9.7 + - - -
1358A LEU* 2.9 39.1 + - - +
1359A ALA* 3.1 35.2 + - - +
1361A SER* 1.3 74.8 - - - +
1363A PHE* 1.3 60.4 + - - +
1365A LYS* 3.3 7.8 + - - +
1366A GLU* 2.8 32.3 + - - +
1453A ILE* 3.9 29.1 - - + +
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Residues in contact with PHE1363 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1135A GLU 3.8 14.6 - - - -
1136A LYS* 3.1 57.2 - - + +
1137A LYS* 4.0 22.4 - - + -
1359A ALA 3.0 8.3 + - - +
1360A ARG 3.4 7.9 - - - +
1362A ARG* 1.3 78.3 - - - +
1364A ASP* 1.3 70.2 + - - +
1366A GLU* 3.2 8.7 + - - +
1367A LYS* 3.1 48.4 + - + +
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Residues in contact with ASP1364 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1136A LYS* 3.1 40.6 + - - -
1360A ARG* 3.0 25.7 + - - +
1361A SER 4.3 0.9 - - - +
1363A PHE* 1.3 84.7 - - - +
1365A LYS* 1.3 58.4 + - - +
1367A LYS* 3.2 10.3 + - - +
1368A ALA* 2.8 29.8 + - - +
1445A LYS* 6.0 1.2 - - + +
1449A LEU* 3.8 21.9 - - + +
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Residues in contact with LYS1365 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1361A SER 3.2 17.0 + - - +
1362A ARG* 3.6 7.6 - - - +
1364A ASP* 1.3 75.5 - - - +
1366A GLU* 1.3 61.2 + - - +
1368A ALA* 3.7 4.2 - - - +
1369A GLU* 2.8 40.6 + - - +
1446A ILE* 4.3 26.8 - - + +
1449A LEU* 3.4 15.8 - - + +
1450A ALA* 4.3 22.7 - - + +
1453A ILE* 3.6 24.5 - - + -
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Residues in contact with GLU1366 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1362A ARG 2.8 17.5 + - - +
1363A PHE* 3.2 7.1 + - - +
1365A LYS* 1.3 79.3 - - - +
1367A LYS* 1.3 55.7 + - - +
1369A GLU* 3.3 6.6 + - + +
1370A LYS* 2.9 50.2 + - + +
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Residues in contact with LYS1367 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1363A PHE* 3.1 44.9 + - + +
1364A ASP* 3.5 13.2 + - - +
1366A GLU* 1.3 75.4 - - - +
1368A ALA* 1.3 63.3 + - - +
1370A LYS* 3.3 8.8 + - + +
1371A ARG* 3.2 24.1 + - - +
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Residues in contact with ALA1368 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1364A ASP 2.8 16.5 + - - +
1365A LYS* 3.2 3.6 + - - +
1367A LYS* 1.3 79.1 - - - +
1369A GLU* 1.3 56.4 + - - +
1371A ARG* 3.5 3.7 + - - +
1372A LEU* 3.0 26.9 + - - +
1442A LEU* 4.0 22.6 - - + +
1445A LYS* 4.7 17.7 - - + -
1446A ILE* 3.7 24.6 - - + +
1449A LEU* 5.2 0.4 - - + -
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Residues in contact with GLU1369 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1365A LYS* 2.8 31.2 + - + +
1366A GLU* 3.8 6.5 - - + +
1368A ALA* 1.3 73.6 - - - +
1370A LYS* 1.3 65.8 + - - +
1371A ARG 3.0 1.8 - - - -
1372A LEU* 3.1 7.1 + - + +
1373A HIS* 3.0 26.9 + - + +
1446A ILE* 3.7 18.4 - - + +
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Residues in contact with LYS1370 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1366A GLU* 2.9 47.3 + - + +
1367A LYS* 3.9 8.5 - - + +
1369A GLU* 1.3 72.1 - - - +
1371A ARG* 1.3 58.7 + - - +
1373A HIS* 3.6 7.2 - - - +
1374A ILE* 3.4 30.8 + - + +
1414A GLU* 5.9 7.0 - - + +
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Residues in contact with ARG1371 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1367A LYS 3.2 16.4 + - - +
1368A ALA* 3.5 6.1 - - - +
1370A LYS* 1.3 74.4 - - - +
1372A LEU* 1.3 64.5 + - - +
1373A HIS 3.1 1.8 - - - -
1374A ILE* 3.3 29.2 + - - +
1375A VAL* 2.9 40.2 + - - +
1378A LEU* 5.1 6.7 - - - +
1435A LEU* 4.8 6.9 - - - +
1438A GLU* 2.9 34.1 + - - +
1442A LEU* 3.5 22.2 - - + -
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Residues in contact with LEU1372 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1368A ALA 3.0 17.8 + - - +
1369A GLU* 3.1 12.1 + - + +
1371A ARG* 1.3 75.6 - - - +
1373A HIS* 1.3 57.4 + - - +
1375A VAL* 3.3 2.6 + - + +
1376A GLU* 2.9 53.6 + - + +
1439A GLU* 3.5 40.4 - - + +
1442A LEU* 3.9 19.7 - - + -
1443A ARG* 4.5 20.4 - - + +
1446A ILE* 4.6 11.4 - - + -
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Residues in contact with HIS1373 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1369A GLU* 3.0 19.0 + - + +
1370A LYS* 3.6 8.3 - - - +
1372A LEU* 1.3 80.4 - - - +
1374A ILE* 1.3 62.4 + - - +
1376A GLU* 3.5 16.2 + - - +
1377A GLY 3.1 5.4 + - - -
1412A THR* 2.8 44.6 + - + +
1414A GLU* 4.0 19.6 - - + +
1415A GLN* 3.0 44.7 + - + -
----------------------------------------------------------
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Residues in contact with ILE1374 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1370A LYS* 3.4 21.2 + - + +
1371A ARG* 3.3 32.2 + - - +
1373A HIS* 1.3 80.2 - - + +
1375A VAL* 1.3 57.9 + - - +
1377A GLY* 3.0 5.5 + - - -
1378A LEU* 2.9 43.0 + - + +
1414A GLU* 4.3 18.6 - - + +
1415A GLN* 4.5 6.5 - - + +
1418A ALA* 3.9 29.8 - - + -
----------------------------------------------------------
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Residues in contact with VAL1375 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1371A ARG* 2.9 54.9 + - + +
1372A LEU* 3.7 5.6 - - - +
1374A ILE* 1.3 73.0 - - + +
1376A GLU* 1.3 68.8 + - - +
1378A LEU* 3.9 6.2 - - + +
1379A ILE* 2.9 37.1 + - + +
1435A LEU* 4.0 31.0 - - + +
1438A GLU* 3.6 12.8 - - - +
1439A GLU* 4.4 13.2 - - + +
1442A LEU* 4.6 2.5 - - + -
----------------------------------------------------------
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Residues in contact with GLU1376 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1372A LEU* 2.9 30.0 + - + +
1373A HIS* 3.6 25.8 + - - +
1375A VAL* 1.3 78.4 - - - +
1377A GLY* 1.3 61.7 + - - +
1379A ILE* 3.3 3.9 + - - +
1380A ARG* 3.1 24.5 + - - +
1415A GLN* 4.3 4.6 + - - +
1439A GLU* 3.5 19.7 - - - +
1443A ARG* 3.3 21.1 + - - -
----------------------------------------------------------
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Residues in contact with GLY1377 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1373A HIS 3.1 4.9 + - - -
1374A ILE 3.0 10.4 + - - -
1376A GLU* 1.3 78.5 - - - +
1378A LEU* 1.3 56.8 + - - +
1380A ARG* 3.3 6.2 + - - +
1381A VAL* 2.9 31.5 + - - +
1411A PHE* 3.6 15.5 - - - -
1415A GLN* 3.4 22.5 - - - +
1419A ILE* 5.3 1.6 - - - -
----------------------------------------------------------
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Residues in contact with LEU1378 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1371A ARG* 5.1 7.9 - - - +
1374A ILE* 2.9 37.7 + - + +
1375A VAL* 3.3 7.8 + - - +
1377A GLY* 1.3 69.8 - - - +
1379A ILE* 1.3 66.7 + - - +
1381A VAL* 2.9 19.3 + - + +
1382A ILE* 3.0 20.5 + - + +
1418A ALA* 5.1 3.6 - - + -
1419A ILE* 4.5 23.8 - - + +
1422A LEU* 4.5 29.8 - - + -
1426A ARG* 6.1 1.3 - - - +
1435A LEU* 4.0 22.7 - - + -
----------------------------------------------------------
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Residues in contact with ILE1379 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1375A VAL* 2.9 27.5 + - + +
1376A GLU* 3.6 4.7 - - - +
1378A LEU* 1.3 76.4 - - - +
1380A ARG* 1.3 64.5 + - - +
1382A ILE* 3.5 10.0 + - - +
1383A SER* 3.8 8.5 + - - -
1432A VAL* 3.8 23.5 - - + +
1435A LEU* 3.9 24.0 - - + +
1436A GLN* 3.8 30.7 - - + +
1439A GLU* 3.3 33.4 - - - +
----------------------------------------------------------
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Residues in contact with ARG1380 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1376A GLU 3.1 13.8 + - - +
1377A GLY* 3.4 9.8 - - - +
1379A ILE* 1.3 75.2 - - - +
1381A VAL* 1.3 67.9 + - - +
1383A SER* 2.9 24.3 + - - -
1384A ILE* 3.4 15.0 + - - +
1409A TYR* 2.3 49.3 + - - +
1410A ASP* 3.6 17.2 + - - +
1411A PHE* 3.7 27.9 - - + -
1415A GLN* 5.5 0.2 + - - -
----------------------------------------------------------
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Residues in contact with VAL1381 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1377A GLY 2.9 14.8 + - - +
1378A LEU* 2.9 13.4 + - + +
1380A ARG* 1.3 75.7 - - - +
1382A ILE* 1.3 55.8 + - + +
1384A ILE* 2.9 11.5 + - - -
1385A LEU* 2.6 56.7 + - + -
1388A VAL* 4.4 14.1 - - + -
1411A PHE* 3.6 10.8 - - + -
1419A ILE* 3.4 43.7 - - + -
1422A LEU* 5.5 9.0 - - + -
----------------------------------------------------------
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Residues in contact with ILE1382 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1378A LEU* 3.0 15.8 + - + +
1379A ILE 3.8 5.4 - - - +
1380A ARG 3.1 0.4 - - - -
1381A VAL* 1.3 82.1 - - + +
1383A SER* 1.3 61.9 + - - +
1384A ILE 3.3 0.3 + - - -
1385A LEU* 3.6 19.4 + - + +
1429A ASN* 4.7 8.7 - - - +
1430A THR* 4.1 39.5 - - + +
1431A ASP 4.2 11.7 - - - +
1432A VAL* 3.7 26.9 - - + -
1435A LEU* 4.0 18.8 - - + -
----------------------------------------------------------
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Residues in contact with SER1383 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1379A ILE 3.8 5.5 + - - -
1380A ARG* 2.9 16.1 + - - -
1382A ILE* 1.3 80.0 - - - +
1384A ILE* 1.3 66.7 + - - +
1385A LEU 3.7 0.2 - - - -
----------------------------------------------------------
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Residues in contact with ILE1384 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1380A ARG* 3.6 18.2 - - - +
1381A VAL* 2.9 11.6 + - - +
1383A SER* 1.3 89.8 - - - +
1385A LEU* 1.3 64.8 + - - +
1386A ASP 3.3 2.8 + - - -
1387A GLU* 3.4 22.6 + - + +
1388A VAL* 3.2 36.3 + - + +
1409A TYR* 3.7 38.1 - - + -
1411A PHE* 4.6 10.8 - - + -
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il