Contacts of the helix formed by residues 66 - 123 (chain I) in PDB entry 4Z84
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with THR 66 (chain I).
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Specific contacts
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Residue Dist Surf HB Arom Phob DC
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235A TYR* 3.2 43.5 + - + -
239A PHE* 3.9 15.6 - - + -
65I THR* 1.3 72.6 - - - +
69I TYR* 1.3 57.7 + - - +
71I ASP* 3.2 10.7 + - + +
72I PHE* 2.9 26.0 + - - +
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Residues in contact with TYR 69 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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136A GLY* 5.3 15.3 - - - -
233A ALA 5.6 2.9 - - - -
234A GLY* 5.6 4.5 - - - -
235A TYR* 4.0 25.5 - + + -
65I THR* 3.2 9.2 + - - +
66I THR* 1.3 78.4 - - - +
70I ALA* 1.3 64.2 + - + +
72I PHE* 3.0 6.6 + + - +
73I ILE* 2.9 63.9 + - + +
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Residues in contact with ALA 70 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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65I THR* 3.0 28.0 + - + +
69I TYR* 1.3 84.6 - - + +
71I ASP* 1.3 63.4 + - - +
73I ILE* 3.4 5.5 + - - +
123I ALA* 3.0 25.6 + - - +
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Residues in contact with ASP 71 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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239A PHE* 4.0 13.5 - - + -
65I THR 3.0 24.0 + - - +
66I THR* 3.4 11.5 - - - +
70I ALA* 1.3 75.8 - - - +
72I PHE* 1.3 64.1 + - - +
123I ALA* 3.4 6.5 + - - +
124I SER* 3.2 21.5 + - - -
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Residues in contact with PHE 72 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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133A ARG* 3.9 32.5 - - - -
203A GLU* 6.1 0.2 - - - -
234A GLY 3.6 18.2 - - - -
235A TYR* 3.4 27.1 - + + -
236A PRO* 3.5 24.7 - - + -
239A PHE* 3.6 26.0 - + + -
66I THR 2.9 13.2 + - - +
69I TYR* 3.0 10.1 + + - +
71I ASP* 1.3 75.0 - - - +
73I ILE* 1.3 72.0 + - + +
124I SER* 2.6 32.9 + - - -
134I ARG* 3.7 26.0 - - + -
135I THR* 3.0 23.1 - - + +
270I ARG* 5.4 0.4 - - - -
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Residues in contact with ILE 73 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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133A ARG* 6.1 2.5 - - - -
69I TYR* 2.9 59.1 + - + +
70I ALA* 3.9 6.3 - - - +
72I PHE* 1.3 91.1 - - + +
123I ALA* 1.3 59.1 + - - +
124I SER 3.2 5.9 + - - +
135I THR* 3.9 14.3 + - + +
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Residues in contact with ALA 123 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
241A ASP* 4.9 0.3 - - - +
70I ALA 3.0 18.6 + - - +
71I ASP* 3.8 6.1 - - - +
72I PHE 3.2 0.4 - - - -
73I ILE* 1.3 73.0 - - - +
124I SER* 1.3 63.9 + - - +
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Residues in contact with SER 124 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
239A PHE* 4.6 12.3 - - - +
240A ALA 4.7 6.2 + - - -
241A ASP* 3.5 14.1 - - - -
71I ASP 3.2 10.8 + - - -
72I PHE* 2.6 30.9 + - - -
73I ILE 3.9 2.3 - - - +
123I ALA* 1.3 81.9 - - - +
125I GLY* 1.3 62.5 + - - +
134I ARG* 3.2 13.4 + - - +
135I THR* 3.7 14.9 + - - +
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Residues in contact with GLY 125 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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241A ASP* 3.0 17.4 + - - -
124I SER* 1.3 74.2 - - - +
134I ARG* 1.3 66.6 + - - +
135I THR* 3.7 2.3 + - - -
136I GLY 5.1 1.4 + - - -
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Residues in contact with ARG 134 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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133A ARG* 4.7 0.5 + - - -
202A PRO* 4.0 18.3 - - - +
203A GLU* 3.0 41.0 + - - +
239A PHE* 5.9 2.7 - - + -
240A ALA 3.8 17.0 - - - +
241A ASP 4.3 10.6 + - - +
243A PRO* 3.8 31.9 - - - +
246A ILE* 3.8 14.6 - - - +
72I PHE* 3.7 16.2 - - + -
124I SER* 3.2 7.8 + - - +
125I GLY* 1.3 84.6 - - - +
135I THR* 1.3 61.6 + - - +
136I GLY 3.4 9.2 - - - +
270I ARG* 3.9 31.4 - - + +
271I ASN* 5.1 9.1 + - - +
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Residues in contact with THR 135 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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129A PHE* 3.6 3.6 - - - -
133A ARG* 3.0 30.2 + - - +
72I PHE* 3.0 53.6 - - + +
73I ILE* 3.9 17.2 + - + +
124I SER* 3.7 14.9 + - - +
125I GLY 3.7 1.8 - - - -
134I ARG* 1.3 74.3 - - - +
136I GLY* 1.3 64.4 + - - +
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Residues in contact with GLY 136 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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129A PHE* 3.5 14.5 - - - -
133A ARG* 5.1 0.2 + - - -
125I GLY 5.1 1.8 + - - -
134I ARG* 3.4 3.1 - - - +
135I THR* 1.3 84.6 + - - +
137I ARG* 1.3 67.9 + - - -
270I ARG* 3.3 15.4 + - - +
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Residues in contact with ARG 137 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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49A LEU 6.0 0.2 + - - -
127A GLU* 2.8 36.1 + - - -
129A PHE* 3.5 24.8 - - + -
130A SER* 3.3 20.0 + - - -
170A GLU* 3.7 15.0 - - + -
327A PHE* 6.0 2.6 - - - +
328A ASP* 2.7 37.2 + - - +
330A TYR* 3.3 27.7 + - - -
401A NVX 6.3 0.2 - - - -
136I GLY* 1.3 72.8 - - - +
270I ARG* 1.3 64.1 + - - +
271I ASN* 3.9 8.0 + - - +
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Residues in contact with ARG 270 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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133A ARG* 3.4 17.1 - - - +
168A LYS* 2.8 24.0 + - - +
169A PRO* 3.6 11.3 - - - +
170A GLU* 2.8 46.7 + - - +
201A THR* 3.8 18.2 - - + +
203A GLU* 3.7 25.5 + - - +
204A TYR* 4.0 14.0 - - - -
230A GLU* 2.8 42.0 + - - -
236A PRO* 4.2 14.3 - - - +
72I PHE* 5.2 0.4 - - - -
134I ARG* 3.9 32.1 + - + +
136I GLY 3.6 10.7 + - - +
137I ARG* 1.3 73.0 - - - +
271I ASN* 1.3 63.0 + - - +
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Residues in contact with ASN 271 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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168A LYS* 4.1 1.3 - - - -
201A THR* 3.8 12.1 - - - +
202A PRO* 3.9 9.5 - - - +
134I ARG* 5.1 9.1 + - - +
137I ARG* 3.9 7.4 + - - +
270I ARG* 1.3 76.4 - - - +
304I ALA* 1.3 69.7 + - - +
305I ILE* 4.6 1.0 - - - +
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Residues in contact with ALA 304 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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53A SER* 5.7 2.1 + - - +
166A ASP* 4.3 7.6 - - - +
168A LYS* 3.9 3.6 - - - +
187A PHE* 3.5 32.5 - - + -
200A GLY 3.3 10.3 - - - +
201A THR* 3.8 8.7 - - - +
270I ARG 3.8 2.0 + - - -
271I ASN* 1.3 83.5 - - - +
305I ILE* 1.3 63.0 + - - +
306I HIS* 5.1 5.0 - - + -
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Residues in contact with ILE 305 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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187A PHE* 3.5 7.3 - - - -
198A LEU* 3.4 33.9 - - + -
199A CYS* 3.3 2.5 - - - -
200A GLY 2.6 38.2 + - - +
202A PRO* 4.0 24.2 - - + -
205A LEU* 3.6 23.1 - - + -
243A PRO* 6.1 1.6 - - + -
247A TYR* 3.5 20.9 - - - +
271I ASN 4.6 1.1 - - - +
304I ALA* 1.3 78.6 - - - +
306I HIS* 1.3 67.4 + - - +
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Residues in contact with HIS 306 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC