Contacts of the helix formed by residues 197 - 234 (chain C) in PDB entry 5AZS
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with THR 197 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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399B ARG* 3.6 33.5 + - - +
409B ARG* 4.8 1.3 + - - +
191C ARG* 4.0 1.2 - - - +
196C ALA* 1.3 78.4 - - - +
198C ALA* 1.3 65.4 + - - +
199C LEU* 3.7 6.0 + - - +
200C ASP* 3.0 46.3 + - - +
201C TYR* 3.2 12.1 + - - +
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Residues in contact with ALA 198 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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395B LEU* 3.4 17.3 - - + -
191C ARG* 3.8 31.2 - - - +
196C ALA 3.9 0.6 + - - -
197C THR* 1.3 74.1 - - - +
199C LEU* 1.3 57.5 + - - +
201C TYR* 3.5 4.2 + - - +
202C GLN* 3.1 30.9 + - + +
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Residues in contact with LEU 199 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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392B ALA* 3.1 42.8 - - + +
395B LEU* 3.2 20.1 - - + +
396B ALA* 4.0 20.6 - - + +
399B ARG* 3.5 27.4 - - - +
409B ARG* 3.2 31.4 - - - +
413B ALA* 5.8 1.6 - - + -
197C THR* 3.2 9.0 + - - +
198C ALA* 1.3 75.0 - - - +
200C ASP* 1.3 64.1 + - - +
202C GLN* 3.4 0.8 + - - +
203C GLU* 3.0 30.3 + - + +
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Residues in contact with ASP 200 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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409B ARG* 3.2 25.2 + - - -
187C ILE* 4.2 9.6 - - + +
196C ALA* 4.5 4.1 - - + +
197C THR* 3.0 38.7 + - - +
199C LEU* 1.3 75.5 - - - +
201C TYR* 1.3 58.3 + - - +
203C GLU* 3.5 0.6 + - - -
204C ALA* 3.0 26.5 + - - +
400C TYR* 3.9 19.8 + - - +
407C HIS* 3.3 40.3 + - + +
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Residues in contact with TYR 201 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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184C PHE* 3.3 39.8 - + - -
187C ILE* 3.8 15.0 - - + +
188C ASP* 3.3 41.2 + - - -
191C ARG* 3.7 44.6 - - + -
197C THR 3.2 5.8 + - - +
198C ALA 3.5 10.3 - - - +
199C LEU 3.2 0.2 - - - -
200C ASP* 1.3 80.2 - - - +
202C GLN* 1.3 71.4 + - - +
204C ALA* 3.7 0.7 + - - +
205C LEU* 3.1 34.9 + - + +
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Residues in contact with GLN 202 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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388B SER* 3.4 45.9 - - - +
391B GLU* 4.1 27.1 + - + -
392B ALA* 4.1 12.8 - - + +
395B LEU* 4.4 12.5 - - + +
191C ARG* 5.4 3.4 - - - +
198C ALA* 3.1 17.9 + - + +
199C LEU 3.8 4.5 - - - +
200C ASP 3.3 0.4 - - - -
201C TYR* 1.3 89.3 - - - +
203C GLU* 1.3 61.1 + - - +
205C LEU* 3.3 13.4 + - - +
206C GLY* 2.9 25.1 + - - -
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Residues in contact with GLU 203 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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392B ALA* 4.9 5.8 - - + +
409B ARG* 2.7 36.5 + - - -
199C LEU* 3.0 32.6 + - + +
200C ASP 3.6 4.0 - - - +
202C GLN* 1.3 75.8 - - - +
204C ALA* 1.3 57.7 + - - +
206C GLY* 3.2 3.8 + - - -
207C LEU* 3.0 32.0 + - - +
407C HIS* 3.0 30.4 + - + +
408C LEU* 4.1 3.6 + - - +
411C LEU* 3.2 36.5 - - + +
415C ARG* 5.8 0.2 - - - +
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Residues in contact with ALA 204 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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180C ARG 4.9 0.3 - - - +
183C SER* 5.5 1.1 - - - -
184C PHE* 3.8 24.5 - - + +
187C ILE* 3.8 23.3 - - + -
200C ASP 3.0 18.1 + - - +
201C TYR* 3.9 3.1 - - - +
203C GLU* 1.3 72.9 - - - +
205C LEU* 1.3 65.5 + - - +
207C LEU* 3.5 17.5 + - + +
208C VAL* 3.3 25.1 + - - +
407C HIS* 4.1 3.7 - - + -
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Residues in contact with LEU 205 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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384B ALA 5.8 0.9 - - - +
388B SER* 4.5 9.2 - - - -
184C PHE* 3.6 29.1 - - + -
201C TYR* 3.1 28.6 + - + +
202C GLN* 3.6 22.0 - - - +
204C ALA* 1.3 73.4 - - - +
206C GLY* 1.3 65.5 + - - +
208C VAL* 3.3 13.4 + - + +
209C GLU* 3.1 46.2 + - + +
212C ARG* 5.7 1.3 - - - +
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Residues in contact with GLY 206 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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385B LEU* 3.3 18.5 - - - +
388B SER* 3.5 18.3 + - - -
389B SER* 5.7 0.9 - - - -
202C GLN 2.9 11.6 + - - -
203C GLU* 3.2 5.6 + - - -
205C LEU* 1.3 76.0 - - - +
207C LEU* 1.3 61.8 + - - +
209C GLU* 3.0 3.5 + - - -
210C GLN* 2.9 26.7 + - - +
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Residues in contact with LEU 207 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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180C ARG* 2.6 51.6 + - + +
183C SER* 6.4 1.3 - - - -
203C GLU 3.0 18.4 + - - +
204C ALA* 3.5 17.5 - - + +
205C LEU 3.4 0.2 - - - -
206C GLY* 1.3 73.8 - - - +
208C VAL* 1.3 62.2 + - - +
210C GLN* 3.4 10.9 + - - +
211C ALA* 3.3 11.6 + - - +
407C HIS* 5.0 4.9 - - - +
411C LEU* 3.5 30.5 - - + +
414C GLN* 3.1 43.7 - - + +
415C ARG* 4.4 9.4 - - + -
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Residues in contact with VAL 208 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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177C LEU* 3.8 11.1 - - + +
180C ARG* 3.2 40.8 - - + +
181C GLU* 4.2 7.0 - - + +
184C PHE* 4.0 14.4 - - + -
204C ALA 3.3 11.9 + - - +
205C LEU* 3.3 13.6 + - + +
206C GLY 3.2 0.6 - - - -
207C LEU* 1.3 78.9 - - - +
209C GLU* 1.3 63.0 + - - +
211C ALA 3.5 0.2 + - - -
212C ARG* 3.0 60.8 + - - +
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Residues in contact with GLU 209 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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381B ALA* 3.8 20.8 - - - +
384B ALA* 4.0 17.4 - - - +
385B LEU* 3.7 35.7 - - + +
388B SER* 5.3 0.2 - - - +
205C LEU* 3.1 35.6 + - + +
206C GLY* 3.0 7.2 + - - +
208C VAL* 1.3 73.5 - - - +
210C GLN* 1.3 56.8 - - - +
212C ARG* 3.5 31.0 + - - +
213C ALA* 2.8 36.2 + - - +
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Residues in contact with GLN 210 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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385B LEU* 3.8 28.1 - - + +
416B SER* 6.2 1.0 - - - -
420B ASN* 5.4 5.2 + - - +
180C ARG* 4.6 9.2 + - - +
206C GLY* 2.9 21.3 + - - +
207C LEU* 3.6 14.6 - - - +
209C GLU* 1.3 76.6 - - - +
211C ALA* 1.3 56.9 + - - +
213C ALA* 3.6 3.6 + - - +
214C GLU* 2.9 29.4 + - - +
411C LEU* 5.7 0.8 - - - +
415C ARG* 4.1 38.0 - - - +
418C PHE* 5.0 6.4 - - + -
419C LEU* 5.2 9.2 - - - +
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Residues in contact with ALA 211 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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173C THR* 3.2 14.3 - - - +
176C THR* 4.8 0.2 - - + -
177C LEU* 4.0 33.4 - - + +
180C ARG* 3.9 12.1 - - + +
207C LEU 3.3 9.4 + - - +
208C VAL 3.8 7.0 - - - +
209C GLU 3.3 0.4 - - - -
210C GLN* 1.3 76.5 - - - +
212C ARG* 1.3 60.0 + - - +
214C GLU* 4.0 6.5 - - - -
215C GLN* 2.8 25.6 + - - +
418C PHE* 4.2 12.1 - - + -
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Residues in contact with ARG 212 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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381B ALA* 4.4 10.8 - - + -
177C LEU* 3.7 21.1 - - + +
181C GLU* 4.2 17.4 + - - +
205C LEU* 5.7 1.4 - - - +
208C VAL* 3.0 39.8 + - - +
209C GLU* 3.1 31.2 + - - +
211C ALA* 1.3 74.5 - - - +
213C ALA* 1.3 63.8 + - - +
215C GLN* 3.3 23.0 + - - +
216C GLU* 3.4 15.1 + - - +
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Residues in contact with ALA 213 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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378B GLU* 3.9 22.5 - - + +
381B ALA* 3.8 19.2 - - + +
382B LEU* 4.3 19.5 - - + +
385B LEU* 5.4 1.1 - - + -
209C GLU 2.8 20.4 + - - +
210C GLN* 3.9 5.4 - - - +
212C ARG* 1.3 72.6 - - - +
214C GLU* 1.3 61.3 + - - +
216C GLU* 3.2 7.0 + - - +
217C ARG* 3.2 26.6 + - - +
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Residues in contact with GLU 214 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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169C ARG* 5.5 0.2 - - - -
173C THR* 3.5 20.4 - - + +
210C GLN 2.9 19.5 + - - +
211C ALA* 3.6 8.5 - - - +
213C ALA* 1.3 75.0 - - - +
215C GLN* 1.3 63.8 + - - +
217C ARG* 3.3 29.6 + - - +
218C ASN* 2.9 49.6 + - - +
221C GLN* 5.7 0.2 + - - -
418C PHE* 3.7 15.9 - - + -
422C ILE* 3.7 21.9 - - + +
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Residues in contact with GLN 215 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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170C LEU* 3.8 14.7 - - + +
173C THR* 3.4 11.2 - - + +
174C ARG* 3.6 39.9 - - + +
177C LEU* 4.1 16.6 - - + +
211C ALA 2.8 14.5 + - - +
212C ARG* 3.4 13.5 - - - +
214C GLU* 1.3 76.8 - - - +
216C GLU* 1.3 70.5 + - - +
218C ASN* 3.2 6.5 + - - +
219C LEU* 3.0 42.7 + - + +
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Residues in contact with GLU 216 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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374B THR* 3.7 24.4 - - - +
377B ARG* 2.7 55.9 + - + +
378B GLU* 3.8 27.8 - - + +
381B ALA* 5.7 0.4 - - + -
212C ARG 3.5 13.4 - - - +
213C ALA 3.2 7.3 + - - +
215C GLN* 1.3 86.2 - - - +
217C ARG* 1.3 66.0 + - - +
219C LEU* 3.4 11.7 + - - +
220C ARG* 3.2 18.5 + - - +
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Residues in contact with ARG 217 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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378B GLU* 2.9 41.3 + - - +
382B LEU* 5.3 7.7 - - - +
430B GLN* 5.3 3.4 + - - -
213C ALA* 3.2 20.3 + - - +
214C GLU* 3.7 33.1 + - - +
216C GLU* 1.3 77.0 - - - +
218C ASN* 1.3 61.5 + - - +
219C LEU 3.4 0.2 + - - -
220C ARG* 3.4 18.8 + - - +
221C GLN* 3.1 48.5 + - + +
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Residues in contact with ASN 218 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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166C ALA* 4.3 5.5 - - - +
169C ARG* 3.4 27.8 - - - +
170C LEU* 4.0 21.5 - - + +
173C THR* 2.7 29.6 + - - -
214C GLU* 2.9 35.7 + - - +
215C GLN 3.2 7.4 + - - +
217C ARG* 1.3 76.0 - - - +
219C LEU* 1.3 57.1 + - - +
221C GLN* 3.0 24.6 + - - +
222C LYS* 3.0 28.9 + - - +
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Residues in contact with LEU 219 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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374B THR* 4.4 5.8 - - + -
377B ARG* 3.7 13.9 - - - +
170C LEU* 3.8 30.7 - - + -
174C ARG* 5.1 7.0 - - - +
215C GLN* 3.0 29.5 + - - +
216C GLU* 3.6 28.5 - - - +
217C ARG 3.3 0.2 - - - -
218C ASN* 1.3 74.3 - - - +
220C ARG* 1.3 66.3 + - - +
222C LYS* 3.3 16.1 + - + +
223C GLN* 2.9 36.3 + - - +
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Residues in contact with ARG 220 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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370B ALA* 5.0 2.5 - - - +
371B ALA* 4.4 13.5 - - - +
374B THR* 2.6 55.4 + - + +
375B LEU* 3.3 32.5 - - - +
378B GLU* 2.8 30.5 + - - -
430B GLN* 4.7 4.2 + - - -
216C GLU 3.2 6.0 + - - +
217C ARG* 3.4 23.6 + - - +
219C LEU* 1.3 74.9 - - - +
221C GLN* 1.3 70.5 + - + +
223C GLN* 2.9 7.2 + - - -
224C GLN* 2.8 54.9 + - + +
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Residues in contact with GLN 221 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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166C ALA* 4.1 5.1 - - + +
169C ARG* 2.7 37.4 + - - +
214C GLU* 5.7 0.2 + - - -
217C ARG* 3.1 36.9 + - + +
218C ASN* 3.0 30.3 + - - +
220C ARG* 1.3 80.4 - - + +
222C LYS* 1.3 61.3 + - - +
224C GLN* 4.3 4.1 - - - +
225C ALA* 3.2 24.8 + - - +
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Residues in contact with LYS 222 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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163C TYR* 3.8 33.4 + - + -
166C ALA* 3.7 18.8 - - + +
167C LEU* 3.7 27.8 - - + +
170C LEU* 4.1 18.4 - - + -
218C ASN 3.0 17.5 + - - +
219C LEU* 3.5 14.4 - - + +
220C ARG 3.2 0.2 - - - -
221C GLN* 1.3 77.2 - - - +
223C GLN* 1.3 66.4 + - + +
225C ALA* 3.5 3.8 + - - +
226C PHE* 2.9 32.6 + - + +
244C ARG* 4.5 24.9 + - - +
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Residues in contact with GLN 223 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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19B SER* 5.4 6.9 + - - -
370B ALA* 4.0 29.4 - - + +
373B ASP* 5.1 7.0 + - - +
374B THR* 4.5 8.3 - - - +
377B ARG* 5.2 2.3 + - - -
219C LEU* 2.9 31.7 + - - +
220C ARG 2.9 5.1 + - - +
222C LYS* 1.3 86.5 - - + +
224C GLN* 1.3 57.1 + - - +
226C PHE* 3.4 11.5 - - + +
227C ASN* 2.9 37.5 + - - +
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Residues in contact with GLN 224 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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363B ARG* 5.4 0.5 + - - -
367B ASP* 3.2 61.6 + - - +
370B ALA* 5.0 3.6 - - + -
371B ALA* 4.1 12.7 - - - +
220C ARG* 2.8 46.8 + - + +
221C GLN* 4.3 4.3 - - - +
223C GLN* 1.3 69.9 - - - +
225C ALA* 1.3 61.0 + - - +
227C ASN* 3.7 2.5 - - - +
228C ALA* 3.0 27.9 + - - +
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Residues in contact with ALA 225 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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159C ALA* 4.0 6.8 - - - +
162C SER* 4.4 8.7 - - - -
163C TYR* 3.8 31.0 - - + +
221C GLN 3.2 18.4 + - - +
222C LYS 3.7 3.6 - - - +
224C GLN* 1.3 76.5 - - - +
226C PHE* 1.3 58.6 + - - +
228C ALA* 3.6 7.1 + - - +
229C LEU* 3.1 32.9 + - - +
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Residues in contact with PHE 226 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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163C TYR* 4.1 22.2 - + + -
222C LYS* 2.9 23.0 + - + +
223C GLN* 3.4 13.0 - - + +
225C ALA* 1.3 74.3 - - - +
227C ASN* 1.3 69.9 + - - +
229C LEU* 3.1 10.2 + - - +
230C VAL* 2.9 44.2 + - + +
239C ALA* 3.9 30.7 - - + -
242C ILE* 3.7 40.8 - - + -
244C ARG* 6.2 3.6 - - + -
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Residues in contact with ASN 227 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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19B SER* 5.3 6.5 + - - -
362B PHE* 5.4 6.1 - - - -
363B ARG* 4.0 11.9 - - + +
366B ALA* 3.4 41.1 - - + +
367B ASP* 3.2 24.9 - - - +
370B ALA* 4.7 1.2 - - - +
223C GLN* 2.9 27.9 + - - +
224C GLN 3.4 1.3 + - - +
226C PHE* 1.3 86.2 - - - +
228C ALA* 1.3 61.3 + - - +
230C VAL* 3.6 11.0 + - - +
231C LEU* 3.2 20.4 + - - +
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Residues in contact with ALA 228 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
363B ARG* 3.7 33.1 - - - +
159C ALA* 4.7 7.9 - - + -
224C GLN 3.0 17.1 + - - +
225C ALA* 3.6 9.6 - - - +
226C PHE 3.2 0.2 - - - -
227C ASN* 1.3 74.1 - - - +
229C LEU* 1.3 65.4 + - - +
231C LEU* 3.0 6.5 + - - +
232C LEU* 2.9 35.7 + - + +
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Residues in contact with LEU 229 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
47C LEU* 4.7 4.9 - - + -
156C VAL* 3.6 28.5 - - + +
159C ALA* 3.7 10.1 - - + +
160C TYR* 3.6 34.1 - - + +
163C TYR* 3.9 35.4 - - + -
225C ALA 3.1 18.5 + - - +
226C PHE* 3.1 9.2 + - - +
228C ALA* 1.3 74.8 - - - +
230C VAL* 1.3 62.9 + - - +
232C LEU* 3.1 6.4 + - - +
233C LEU* 2.9 32.4 + - + +
242C ILE* 3.5 23.3 - - + -
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Residues in contact with VAL 230 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
362B PHE* 5.0 18.8 - - + -
226C PHE* 2.9 40.9 + - + +
227C ASN* 3.7 14.8 - - - +
228C ALA 3.3 0.2 - - - -
229C LEU* 1.3 74.5 - - - +
231C LEU* 1.3 59.4 + - - +
233C LEU* 3.5 2.1 + - - +
234C GLY* 3.0 24.9 + - - -
235C SER 4.4 6.7 + - - +
238C ALA* 4.2 15.5 - - + +
239C ALA* 4.2 18.2 - - + +
242C ILE* 4.0 11.4 - - + +
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Residues in contact with LEU 231 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
356B GLY 5.1 0.2 - - - +
359B GLN* 3.1 54.7 - - + +
360B THR* 3.4 20.4 - - + +
363B ARG* 3.7 38.8 - - + +
55C ASN* 4.2 4.7 + - - -
227C ASN 3.2 10.2 + - - +
228C ALA* 3.0 10.8 + - - +
230C VAL* 1.3 81.1 - - - +
232C LEU* 1.3 68.7 + - + +
234C GLY* 3.2 15.1 + - - -
----------------------------------------------------------
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Residues in contact with LEU 232 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
363B ARG* 5.7 2.7 - - - +
51C ALA* 3.4 13.9 - - - +
55C ASN* 2.9 26.5 + - - +
152C LEU* 3.9 15.9 - - + +
155C GLU* 3.6 41.3 - - + +
156C VAL* 3.9 21.3 - - + +
159C ALA* 4.4 12.8 - - + -
228C ALA* 2.9 43.0 + - + +
229C LEU* 3.1 7.8 + - - +
231C LEU* 1.3 80.1 - - + +
233C LEU* 1.3 64.6 + - - +
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Residues in contact with LEU 233 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
47C LEU* 3.0 51.8 - - + +
50C MET* 3.6 28.4 - - + +
51C ALA* 3.6 13.9 - - + +
54C ASN* 3.6 10.0 - - - +
156C VAL* 4.2 9.4 - - + -
229C LEU* 2.9 22.9 + - + +
232C LEU* 1.3 75.3 - - - +
234C GLY* 1.3 64.8 + - - +
235C SER* 3.4 2.1 + - - -
238C ALA* 3.5 32.3 - - + +
242C ILE* 3.9 28.9 - - + -
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Residues in contact with GLY 234 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
13B PRO* 5.2 0.6 - - - +
359B GLN* 3.1 32.2 + - - -
54C ASN* 3.0 22.4 - - - +
55C ASN* 4.9 1.3 - - - -
56C ARG* 3.2 8.8 + - - -
230C VAL 3.0 11.4 + - - -
231C LEU* 3.2 14.3 + - - -
232C LEU 4.3 0.7 - - - -
233C LEU* 1.3 78.3 - - - +
235C SER* 1.3 56.8 + - - +
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il