Contacts of the helix formed by residues 335 - 403 (chain A) in PDB entry 5AZS
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ARG 335 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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332A ASP* 3.6 29.0 + - + +
333A GLY 5.3 3.0 - - - +
334A GLY* 1.3 73.7 - - - +
336A ASN* 1.3 62.8 + - - +
337A ARG 3.3 1.6 - - - -
338A ALA* 3.1 6.8 + - - +
339A ASN* 2.7 40.5 + - - +
74B ILE* 4.0 27.1 + - + -
77B ALA* 3.9 28.8 + - + +
78B ASP* 5.3 12.1 + - - +
117B PRO* 5.9 5.1 - - - +
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Residues in contact with ASN 336 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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288A ALA 4.8 2.0 - - - +
291A ALA* 3.3 42.9 + - + +
292A PHE* 3.4 35.4 - - + +
329A PRO* 4.5 11.7 - - - +
332A ASP* 2.9 26.1 + - - +
335A ARG* 1.3 82.8 - - - +
337A ARG* 1.3 57.4 + - - +
339A ASN* 3.3 10.4 + - - +
340A LEU* 2.8 24.1 + - - +
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Residues in contact with ARG 337 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
292A PHE* 3.3 19.9 - - + -
334A GLY* 4.0 20.1 + - - +
335A ARG 3.3 0.8 - - - +
336A ASN* 1.3 75.1 - - - +
338A ALA* 1.3 65.8 + - - +
340A LEU* 3.6 8.1 - - + +
341A SER* 2.8 60.1 + - - -
69B ARG* 5.2 1.8 - - - +
70B ALA* 6.3 0.4 - - - +
73B ARG* 3.1 40.1 - - - +
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Residues in contact with ALA 338 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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334A GLY 3.4 14.6 - - - +
335A ARG 3.1 9.3 + - - +
337A ARG* 1.3 83.5 - - - +
339A ASN* 1.3 54.9 + - - +
341A SER* 3.1 7.2 + - - -
342A LEU* 2.7 37.2 + - - +
70B ALA* 3.5 16.6 - - - +
73B ARG* 4.0 12.6 - - + -
74B ILE* 3.6 21.3 - - + +
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Residues in contact with ASN 339 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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288A ALA* 3.9 14.2 - - + +
291A ALA* 5.8 5.9 - - + +
335A ARG* 2.7 22.1 + - - +
336A ASN* 3.4 13.9 + - - +
338A ALA* 1.3 72.5 - - - +
340A LEU* 1.3 55.7 + - - +
342A LEU* 3.8 8.5 - - - +
343A ALA* 3.0 29.6 + - - +
74B ILE* 3.5 24.4 - - - +
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Residues in contact with LEU 340 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
285A ILE* 4.9 6.1 - - + +
288A ALA* 3.9 19.2 - - + +
289A ARG* 3.9 44.4 - - + +
292A PHE* 4.3 13.9 - - + -
336A ASN 2.8 16.5 + - - +
337A ARG* 3.6 11.0 - - + +
339A ASN* 1.3 74.5 - - - +
341A SER* 1.3 61.5 + - - +
343A ALA* 3.3 2.3 + - - +
344A GLU* 2.9 42.2 + - + +
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Residues in contact with SER 341 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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337A ARG* 2.8 53.3 + - - -
338A ALA* 3.5 6.7 - - - -
340A LEU* 1.3 73.9 - - - +
342A LEU* 1.3 57.5 + - - +
344A GLU* 3.2 22.1 + - - +
345A ALA* 3.1 28.4 + - - +
66B GLU* 4.8 7.6 - - - +
69B ARG* 6.2 1.3 - - - -
70B ALA* 4.4 9.8 - - - +
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Residues in contact with LEU 342 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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338A ALA 2.7 20.9 + - - +
339A ASN* 3.8 9.6 - - - +
341A SER* 1.3 71.4 - - - +
343A ALA* 1.3 62.3 + - + +
345A ALA* 3.4 2.5 + - - +
346A ARG* 3.0 74.3 + - + +
67B ALA* 3.6 40.8 - - + +
70B ALA* 3.7 10.1 - - + +
71B GLN* 4.2 17.9 - - + +
74B ILE* 4.9 8.1 - - + -
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Residues in contact with ALA 343 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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281A ARG* 4.4 3.8 - - - +
284A ASP* 4.2 14.8 - - + +
285A ILE* 3.9 30.0 - - + +
288A ALA* 4.3 5.8 - - + -
339A ASN 3.0 17.9 + - - +
340A LEU 3.8 3.6 - - - +
342A LEU* 1.3 81.2 - - + +
344A GLU* 1.3 56.6 + - - +
346A ARG* 3.6 10.5 + - - +
347A LYS* 3.0 27.0 + - - +
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Residues in contact with GLU 344 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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285A ILE* 4.4 11.4 - - + +
340A LEU* 2.9 21.2 + - + +
341A SER* 3.2 30.6 + - - +
343A ALA* 1.3 75.2 - - - +
345A ALA* 1.3 64.8 + - + +
347A LYS* 3.2 7.5 + - + +
348A ASP* 2.8 43.9 + - - +
66B GLU* 5.0 9.3 - - + +
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Residues in contact with ALA 345 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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341A SER 3.1 13.9 + - - +
342A LEU 3.8 4.3 - - - +
344A GLU* 1.3 82.3 - - - +
346A ARG* 1.3 62.9 + - - +
348A ASP* 3.4 9.1 + - - +
349A SER* 3.0 23.9 + - - -
63B LEU* 3.6 27.8 - - - +
66B GLU* 3.7 21.3 - - + -
67B ALA* 3.8 11.9 - - + +
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Residues in contact with ARG 346 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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281A ARG* 3.4 29.5 - - + +
284A ASP* 4.0 18.4 + - + +
342A LEU* 3.0 54.5 + - + +
343A ALA* 3.7 10.5 - - - +
345A ALA* 1.3 77.6 - - - +
347A LYS* 1.3 56.4 + - - +
349A SER* 2.7 25.2 + - - +
350A ALA* 3.0 9.5 + - - +
67B ALA* 5.4 4.9 - - + -
71B GLN* 5.7 3.6 + - - +
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Residues in contact with LYS 347 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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278A LEU* 4.0 13.2 - - + -
281A ARG* 3.5 20.6 - - + +
282A ASN* 4.5 13.5 - - - +
285A ILE* 3.8 26.2 - - + +
343A ALA 3.0 19.1 + - - +
344A GLU* 3.2 3.7 + - + +
346A ARG* 1.3 73.2 - - - +
348A ASP* 1.3 89.2 + - - +
350A ALA* 2.9 14.7 + - - +
351A VAL* 3.0 25.0 + - + +
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Residues in contact with ASP 348 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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344A GLU* 2.8 33.5 + - - +
345A ALA* 3.4 4.5 + - - +
347A LYS* 1.3 92.2 + - - +
349A SER* 1.3 57.0 + - - +
351A VAL* 3.4 8.6 + - - +
352A ALA* 3.0 23.2 + - - +
59B ARG* 5.7 0.2 - - - -
63B LEU* 3.4 34.4 - - + +
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Residues in contact with SER 349 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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345A ALA 3.0 13.2 + - - -
346A ARG* 2.7 22.8 + - - -
347A LYS 3.1 0.2 - - - -
348A ASP* 1.3 73.4 - - - +
350A ALA* 1.3 55.3 + - - +
352A ALA* 3.3 4.1 + - - +
353A ALA* 2.7 36.7 + - - +
60B GLN* 3.9 18.6 + - - -
63B LEU* 3.5 19.9 - - - +
64B ASP* 6.3 1.1 - - - -
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Residues in contact with ALA 350 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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274A ALA 4.4 2.8 - - - +
277A ARG* 4.4 6.7 - - + +
278A LEU* 3.6 36.0 - - + +
281A ARG* 4.2 10.5 - - + +
346A ARG 3.0 8.9 + - - +
347A LYS 2.9 9.3 + - - +
349A SER* 1.3 81.6 + - - +
351A VAL* 1.3 56.3 + - - +
353A ALA* 3.5 7.4 - - - +
354A TYR* 2.9 29.5 + - - +
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Residues in contact with VAL 351 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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10A PRO* 3.9 17.7 - - + -
278A LEU* 3.3 34.3 - - + -
347A LYS* 3.0 26.3 + - + +
348A ASP* 3.5 11.0 - - - +
349A SER 3.2 0.2 - - - -
350A ALA* 1.3 73.9 - - - +
352A ALA* 1.3 55.4 + - - +
354A TYR* 3.2 3.7 + - - +
355A GLU* 2.8 60.1 + - - +
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Residues in contact with ALA 352 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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348A ASP 3.0 16.3 + - - +
349A SER* 3.6 2.0 - - - +
351A VAL* 1.3 75.1 - - - +
353A ALA* 1.3 53.8 + - - +
355A GLU* 4.1 6.3 - - - -
356A GLY* 2.8 31.0 + - - -
56B ARG* 3.1 17.9 - - + +
59B ARG* 3.9 30.7 - - + -
60B GLN* 3.6 23.3 - - + +
63B LEU* 4.5 0.9 - - + -
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Residues in contact with ALA 353 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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274A ALA* 4.9 4.5 - - + +
277A ARG* 6.5 0.9 - - - -
349A SER 2.7 21.0 + - - +
350A ALA* 3.5 10.3 - - - +
352A ALA* 1.3 72.7 - - - +
354A TYR* 1.3 49.4 + - - +
356A GLY* 3.4 0.5 + - - -
357A THR* 2.6 44.2 + - - +
60B GLN* 3.5 25.0 + - - +
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Residues in contact with TYR 354 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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7A TYR* 5.4 0.2 - - - -
9A ARG* 3.2 32.3 + - + -
10A PRO* 3.7 43.2 + - + -
12A ALA* 5.9 0.2 - - - -
13A PRO* 6.1 0.2 - - + -
265A ILE* 3.5 9.0 - - - +
271A ILE* 3.8 22.0 - - + -
274A ALA* 4.1 15.0 - - + +
275A GLU* 3.6 39.7 - - + -
278A LEU* 4.7 5.2 - - + -
350A ALA 2.9 18.8 + - - +
351A VAL* 3.4 5.8 - - - +
353A ALA* 1.3 75.9 - - - +
355A GLU* 1.3 67.1 + - + +
357A THR* 3.3 2.8 + - - -
358A ILE* 3.0 50.0 + - + +
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Residues in contact with GLU 355 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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10A PRO* 4.0 18.1 - - + +
11A ALA 4.8 2.7 - - - +
13A PRO* 3.7 23.8 - - + +
351A VAL* 2.8 40.9 + - + +
352A ALA* 3.7 7.4 - - - +
354A TYR* 1.3 76.5 - - + +
356A GLY* 1.3 57.8 + - - +
358A ILE* 3.3 4.8 + - - +
359A GLN* 3.0 32.6 + - - +
56B ARG* 2.8 48.8 + - - +
59B ARG* 3.8 7.3 + - - -
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Residues in contact with GLY 356 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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352A ALA 2.8 21.4 + - - -
353A ALA* 3.7 1.6 - - - -
355A GLU* 1.3 69.5 - - - +
357A THR* 1.3 59.3 + - - +
359A GLN* 3.8 8.1 - - - +
360A THR* 2.9 33.5 + - - -
56B ARG* 3.5 17.4 - - - +
60B GLN* 5.6 1.1 - - - -
231B LEU* 4.7 2.1 - - - +
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Residues in contact with THR 357 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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270A ASP* 3.6 42.6 - - + +
271A ILE* 3.8 7.4 - - + +
274A ALA* 3.9 11.6 - - + +
353A ALA* 2.6 32.5 + - - +
354A TYR 3.6 5.4 - - - -
356A GLY* 1.3 69.6 - - - +
358A ILE* 1.3 65.8 + - - +
360A THR* 3.6 6.9 + - + +
361A ALA* 3.1 23.2 + - - +
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Residues in contact with ILE 358 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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12A ALA* 4.6 10.5 - - + -
13A PRO* 4.1 11.2 - - + -
14A VAL* 3.6 27.8 - - + -
264A LEU* 5.4 1.8 - - + +
265A ILE* 4.0 29.2 - - + -
271A ILE* 3.5 24.9 - - + -
354A TYR* 3.0 53.5 + - + +
355A GLU 3.5 7.2 - - - +
357A THR* 1.3 74.6 - - - +
359A GLN* 1.3 64.6 + - - +
361A ALA* 3.0 6.4 + - - +
362A PHE* 2.9 21.2 + - + +
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Residues in contact with GLN 359 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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13A PRO* 3.6 26.4 - - + +
14A VAL* 3.6 24.0 - - + -
355A GLU 3.0 19.2 + - - +
356A GLY* 3.8 5.8 - - - +
358A ILE* 1.3 75.6 - - - +
360A THR* 1.3 60.7 + - - +
362A PHE* 3.3 5.0 - - - +
363A ARG* 3.1 21.5 + - - +
55B ASN* 5.7 0.2 + - - -
56B ARG* 3.7 22.5 + - - +
231B LEU* 3.6 24.1 + - + +
234B GLY* 2.9 43.8 - - - +
235B SER 4.0 0.7 + - - +
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Residues in contact with THR 360 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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268A ARG* 5.6 0.9 - - - +
356A GLY 2.9 19.8 + - - -
357A THR* 3.7 7.9 - - + +
359A GLN* 1.3 72.3 - - - +
361A ALA* 1.3 61.1 + - - +
363A ARG* 2.8 23.1 + - - +
364A GLU* 2.9 41.6 + - + +
231B LEU* 3.7 23.8 - - + +
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Residues in contact with ALA 361 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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264A LEU* 4.0 15.6 - - + +
268A ARG* 3.2 41.5 - - - +
270A ASP* 6.0 0.4 - - + -
271A ILE* 4.3 8.1 - - + -
357A THR* 3.1 11.2 + - + +
358A ILE 3.0 8.4 + - - +
360A THR* 1.3 79.8 - - - +
362A PHE* 1.3 59.3 - - - +
364A GLU* 3.5 2.0 + - - +
365A VAL* 3.3 31.0 + - - +
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Residues in contact with PHE 362 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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14A VAL* 3.7 29.8 - - + -
15A ALA* 3.4 36.3 - - + -
17A SER 3.8 12.6 - - - -
18A TRP* 3.1 59.8 + + - +
261A PRO* 3.9 11.0 - - + -
264A LEU* 4.4 3.2 - - + +
358A ILE* 2.9 11.7 + - + +
359A GLN 3.3 11.0 - - - +
361A ALA* 1.3 77.6 - - - +
363A ARG* 1.3 61.4 + - - +
365A VAL* 3.5 0.5 - - - +
366A ALA* 3.3 23.0 + - + +
230B VAL* 5.6 13.2 - - + -
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Residues in contact with ARG 363 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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359A GLN 3.1 10.9 + - - +
360A THR* 2.8 12.1 + - - +
362A PHE* 1.3 78.6 - - + +
364A GLU* 1.3 73.2 + - - +
366A ALA* 3.8 5.2 - - - +
367A ASP* 3.0 46.5 + - - +
227B ASN* 3.4 29.8 - - + +
228B ALA* 3.6 33.9 - - - +
231B LEU* 3.9 27.0 - - + +
232B LEU* 6.2 1.2 - - - +
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Residues in contact with GLU 364 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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268A ARG* 2.7 35.3 + - - +
360A THR* 2.9 38.1 + - + +
361A ALA 4.0 4.5 - - - +
362A PHE 3.4 0.6 - - - -
363A ARG* 1.3 92.6 + - - +
365A VAL* 1.3 57.8 + - - +
367A ASP* 3.7 7.5 - - - +
368A ALA* 3.2 23.6 + - - +
440A ARG* 5.9 0.9 + - - +
441A ALA* 3.9 16.3 - - + +
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Residues in contact with VAL 365 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
18A TRP* 3.0 45.3 - - + -
258A PRO* 6.4 0.4 - - + -
264A LEU* 4.4 4.3 - - + -
361A ALA 3.3 7.8 + - - +
362A PHE 3.5 5.2 - - - +
364A GLU* 1.3 72.6 - - - +
366A ALA* 1.3 59.6 + - - +
367A ASP 3.2 0.2 - - - -
368A ALA* 3.0 5.5 + - - +
369A LEU* 2.7 41.0 + - + +
438A LEU* 4.0 3.8 - - + +
441A ALA* 3.1 42.8 - - + +
442A LEU* 3.7 20.9 - - + -
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Residues in contact with ALA 366 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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18A TRP* 4.1 18.2 - - + -
362A PHE* 3.3 19.2 + - + +
363A ARG* 3.8 4.0 - - - +
365A VAL* 1.3 82.1 - - - +
367A ASP* 1.3 56.8 + - - +
369A LEU* 3.4 8.1 + - - +
370A ALA* 2.9 31.0 + - - +
227B ASN* 3.3 24.7 + - - +
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Residues in contact with ASP 367 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
363A ARG* 3.0 40.3 + - - +
364A GLU* 3.7 7.9 - - - +
366A ALA* 1.3 75.9 - - - +
368A ALA* 1.3 57.0 + - - +
370A ALA* 3.5 4.2 + - - +
371A ALA* 2.9 31.1 + - - +
224B GLN* 3.5 34.5 + - - +
227B ASN* 2.9 30.4 + - - +
228B ALA* 6.0 0.2 - - - +
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Residues in contact with ALA 368 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
364A GLU 3.2 11.3 + - - +
365A VAL* 3.0 6.7 + - - +
367A ASP* 1.3 78.1 - - - +
369A LEU* 1.3 56.6 + - - +
371A ALA* 3.7 5.7 - - - +
372A SER* 3.0 33.1 + - - -
434A ALA* 4.3 4.9 - - - +
437A ASP* 4.2 9.0 - - + +
438A LEU* 3.4 45.4 - - + +
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Residues in contact with LEU 369 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
18A TRP* 4.3 27.8 - - + -
19A SER 5.5 6.7 - - - +
256A ILE 5.5 1.1 - - - +
258A PRO* 4.2 35.2 - - + -
365A VAL* 2.7 24.8 + - + +
366A ALA* 3.7 6.1 - - - +
368A ALA* 1.3 71.2 - - - +
370A ALA* 1.3 61.0 + - - +
372A SER* 3.2 4.6 + - - -
373A ASP* 2.9 34.3 + - - +
438A LEU* 3.4 29.8 - - + -
----------------------------------------------------------
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Residues in contact with ALA 370 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
366A ALA 2.9 18.1 + - - +
367A ASP* 3.7 6.5 - - - +
369A LEU* 1.3 74.4 - - - +
371A ALA* 1.3 60.5 + - - +
373A ASP* 4.0 4.1 - - - +
374A THR* 2.9 30.8 + - - -
220B ARG* 5.0 3.6 - - - +
223B GLN* 3.1 41.2 - - + +
224B GLN* 4.8 6.5 - - + -
227B ASN* 4.7 3.6 - - - +
----------------------------------------------------------
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Residues in contact with ALA 371 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
367A ASP 2.9 18.6 + - - +
368A ALA* 3.7 6.1 - - - +
370A ALA* 1.3 74.5 - - - +
372A SER* 1.3 55.7 + - - +
374A THR* 3.1 2.9 + - - -
375A LEU* 2.7 56.1 + - + +
434A ALA* 4.1 10.5 - - + -
220B ARG* 4.4 13.7 - - - +
224B GLN* 4.2 13.4 - - - +
----------------------------------------------------------
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Residues in contact with SER 372 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
368A ALA 3.0 21.2 + - - -
369A LEU* 3.8 5.6 - - - -
371A ALA* 1.3 75.7 - - - +
373A ASP* 1.3 60.4 + - - +
375A LEU* 4.2 6.9 - - - +
376A ARG* 3.1 38.0 + - - +
431A ARG* 5.1 4.2 + - - +
434A ALA* 3.7 16.3 + - - +
435A LEU* 3.9 22.4 - - - +
438A LEU* 4.8 10.0 - - - +
----------------------------------------------------------
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Residues in contact with ASP 373 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
369A LEU 2.9 21.3 + - - +
370A ALA* 4.0 4.7 - - - +
372A SER* 1.3 72.0 - - - +
374A THR* 1.3 63.1 + - - +
376A ARG* 3.2 32.8 + - - +
377A ARG* 2.8 40.8 + - - +
223B GLN* 5.1 9.0 + - - +
----------------------------------------------------------
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Residues in contact with THR 374 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
370A ALA 2.9 19.6 + - - -
371A ALA 3.1 3.9 + - - -
373A ASP* 1.3 80.0 + - - +
375A LEU* 1.3 51.6 + - - +
377A ARG* 3.2 5.9 + - - +
378A GLU* 2.8 32.2 + - - +
216B GLU* 3.1 47.4 + - + +
219B LEU* 4.7 6.2 - - - +
220B ARG* 3.5 42.9 + - + +
223B GLN* 4.4 4.0 + - - -
----------------------------------------------------------
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Residues in contact with LEU 375 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
371A ALA* 2.7 31.0 + - + +
372A SER* 4.2 2.9 - - - +
374A THR* 1.3 70.8 - - - +
376A ARG* 1.3 61.6 + - - +
378A GLU* 3.9 9.8 - - + +
379A GLU* 3.0 31.5 + - - +
427A GLY* 4.2 7.6 - - - +
430A GLN* 3.2 46.9 - - + +
431A ARG* 3.7 20.1 - - + +
434A ALA* 3.4 21.5 - - + -
220B ARG* 3.2 33.2 - - - +
----------------------------------------------------------
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Residues in contact with ARG 376 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
254A GLN* 4.2 14.8 + - - +
255A ASP* 3.8 22.6 + - - -
372A SER* 3.1 28.8 + - - +
373A ASP* 3.2 34.1 + - - +
375A LEU* 1.3 75.7 - - - +
377A ARG* 1.3 61.7 + - + +
379A GLU* 3.4 22.9 - - - +
380A LYS* 3.7 9.2 + - - +
431A ARG* 4.0 19.0 - - - +
435A LEU* 6.2 0.4 - - - +
----------------------------------------------------------
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Residues in contact with ARG 377 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
373A ASP* 2.8 43.4 + - - +
374A THR* 3.2 4.1 + - - +
376A ARG* 1.3 81.1 - - + +
378A GLU* 1.3 64.7 + - - +
380A LYS* 3.2 25.6 - - + +
381A ALA* 3.8 5.7 + - - +
216B GLU* 2.8 47.5 + - + +
219B LEU* 3.6 21.1 - - - +
----------------------------------------------------------
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Residues in contact with GLU 378 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
374A THR 2.8 16.5 + - - +
375A LEU* 3.9 13.4 - - + +
376A ARG 3.4 0.2 - - - -
377A ARG* 1.3 72.5 - - - +
379A GLU* 1.3 59.5 + - - +
380A LYS 3.2 0.2 - - - -
381A ALA* 2.9 9.9 + - - +
382A LEU* 2.9 44.1 + - + +
427A GLY* 5.4 2.4 - - - +
430A GLN* 5.1 3.1 - - - +
213B ALA* 3.0 27.5 - - + +
216B GLU* 3.3 24.7 - - + -
217B ARG* 3.1 17.1 + - - +
220B ARG* 2.8 31.1 + - - +
----------------------------------------------------------
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Residues in contact with GLU 379 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
375A LEU 3.0 16.3 + - - +
376A ARG* 3.4 18.1 - - - +
378A GLU* 1.3 76.8 - - - +
380A LYS* 1.3 56.6 + - - +
382A LEU* 3.8 11.9 - - + -
383A ARG* 3.1 27.9 + - - +
424A PHE* 3.7 9.2 - - + -
427A GLY 4.5 11.0 - - - +
428A SER* 4.2 21.4 + - - +
431A ARG* 3.4 29.6 + - - -
----------------------------------------------------------
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Residues in contact with LYS 380 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
376A ARG 3.7 6.1 + - - +
377A ARG* 3.2 24.5 - - + +
378A GLU 3.2 0.6 - - - -
379A GLU* 1.3 82.0 - - + +
381A ALA* 1.3 66.9 + - + +
383A ARG* 3.5 4.1 + - - +
384A ALA* 3.2 31.3 + - - +
209B GLU* 4.2 19.1 + - - -
----------------------------------------------------------
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Residues in contact with ALA 381 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
377A ARG 4.2 7.0 - - - +
378A GLU 2.9 8.8 + - - +
380A LYS* 1.3 83.7 - - + +
382A LEU* 1.3 58.9 + - - +
385A LEU* 3.1 30.0 + - - +
209B GLU* 3.4 36.4 - - - +
212B ARG* 4.3 7.4 - - + -
213B ALA* 3.8 20.9 - - + +
216B GLU* 6.2 0.2 - - + -
----------------------------------------------------------
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Residues in contact with LEU 382 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
378A GLU* 2.9 33.0 + - + +
379A GLU* 3.8 12.1 - - + +
380A LYS 3.3 0.4 - - - -
381A ALA* 1.3 75.4 - - - +
383A ARG* 1.3 59.3 + - - +
385A LEU* 4.0 12.2 - - + +
386A ALA* 3.0 28.4 + - - +
420A ASN 4.4 3.3 - - - +
423A ALA* 3.7 27.6 - - + +
424A PHE* 3.6 22.6 - - + +
427A GLY* 3.7 31.6 - - - -
213B ALA* 4.7 13.7 - - + -
----------------------------------------------------------
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Residues in contact with ARG 383 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
379A GLU 3.1 12.9 + - - +
380A LYS* 3.5 5.4 + - - +
382A LEU* 1.3 75.7 - - - +
384A ALA* 1.3 59.3 + - - +
386A ALA* 3.1 32.7 + - - +
387A ASN* 2.9 62.4 + - - +
421A GLU* 3.5 19.9 + - - -
424A PHE* 3.3 39.0 - - + -
----------------------------------------------------------
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Residues in contact with ALA 384 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
380A LYS* 3.2 18.6 + - - +
383A ARG* 1.3 79.2 - - - +
385A LEU* 1.3 55.7 + - - +
387A ASN* 3.6 9.1 + - - +
388A SER* 2.9 32.8 + - - -
209B GLU* 3.2 31.9 - - + +
----------------------------------------------------------
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Residues in contact with LEU 385 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
381A ALA 3.1 21.6 + - - +
382A LEU* 4.0 12.8 - - + +
384A ALA* 1.3 74.0 - - - +
386A ALA* 1.3 54.1 + - - +
388A SER* 4.1 3.8 - - - -
389A SER* 2.7 39.4 + - - -
420A ASN* 3.5 37.2 - - + +
206B GLY* 3.2 32.3 - - - +
209B GLU* 4.1 9.3 - - + +
210B GLN* 3.7 31.4 - - + +
213B ALA* 6.0 1.8 - - + -
----------------------------------------------------------
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Residues in contact with ALA 386 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
382A LEU 3.0 19.0 + - - +
383A ARG* 3.4 23.6 - - - +
385A LEU* 1.3 76.9 - - - +
387A ASN* 1.3 58.7 + - - +
389A SER* 2.8 19.9 + - - -
390A ASN* 3.1 23.3 + - - +
420A ASN* 4.1 17.9 - - - +
421A GLU* 3.6 15.3 - - - +
424A PHE* 4.5 2.9 - - + -
----------------------------------------------------------
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Residues in contact with ASN 387 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
383A ARG* 2.9 57.6 + - - +
384A ALA* 3.9 7.6 - - - +
386A ALA* 1.3 75.3 - - - +
388A SER* 1.3 57.9 + - - +
389A SER 3.3 0.2 - - - -
390A ASN* 3.9 6.2 + - - +
391A GLU* 3.0 31.0 + - - +
----------------------------------------------------------
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Residues in contact with SER 388 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
384A ALA 2.9 25.0 + - - -
385A LEU 3.7 4.3 - - - -
387A ASN* 1.3 71.8 - - - +
389A SER* 1.3 59.1 + - - +
391A GLU* 4.1 0.4 - - - -
392A ALA* 3.1 29.6 + - - +
202B GLN* 4.0 17.3 - - - +
205B LEU* 3.3 29.5 - - - +
206B GLY* 3.7 27.0 + - - -
209B GLU* 4.8 1.7 - - - +
----------------------------------------------------------
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Residues in contact with SER 389 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
385A LEU* 2.7 21.2 + - - +
386A ALA* 2.8 26.7 + - - -
388A SER* 1.3 73.8 - - - +
390A ASN* 1.3 61.9 + - - +
392A ALA* 3.5 5.2 + - - +
393A LEU* 2.8 29.3 + - - +
413A ALA* 4.8 2.4 - - - +
416A SER* 4.1 3.8 - - - -
417A SER* 3.8 17.4 + - - -
420A ASN* 3.3 26.3 - - - +
----------------------------------------------------------
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Residues in contact with ASN 390 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
386A ALA 3.1 19.4 + - - +
387A ASN* 3.4 8.3 + - - +
388A SER 3.4 0.2 - - - -
389A SER* 1.3 84.6 + - - +
391A GLU* 1.3 59.8 + - - +
393A LEU* 3.6 12.0 - - + +
394A LYS* 3.4 19.8 + - - +
417A SER* 2.7 27.9 + - - +
421A GLU* 3.3 22.6 + - - +
----------------------------------------------------------
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Residues in contact with GLU 391 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
387A ASN 3.0 16.6 + - - +
388A SER* 4.3 0.9 - - - +
390A ASN* 1.3 74.5 - - - +
392A ALA* 1.3 59.2 + - - +
393A LEU 3.1 1.8 - - - -
394A LYS* 3.0 11.2 + - - +
395A LEU* 2.9 39.5 + - + +
202B GLN* 3.3 28.5 - - - +
----------------------------------------------------------
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Residues in contact with ALA 392 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
388A SER 3.1 20.2 + - - +
389A SER* 3.8 5.6 - - - +
391A GLU* 1.3 75.4 - - - +
393A LEU* 1.3 58.2 + - - +
395A LEU* 4.5 5.2 - - - -
396A ALA* 3.1 30.5 + - - +
413A ALA* 4.4 5.4 - - + +
199B LEU* 3.4 25.5 - - + +
202B GLN* 4.1 13.9 - - + +
203B GLU* 4.8 8.3 - - + -
----------------------------------------------------------
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Residues in contact with LEU 393 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
389A SER 2.8 18.4 + - - +
390A ASN* 3.6 11.9 - - + +
392A ALA* 1.3 76.8 - - - +
394A LYS* 1.3 58.4 + - + +
396A ALA* 3.3 1.4 + - - +
397A LYS* 2.8 31.6 + - + +
410A TYR* 4.0 12.1 - - + -
413A ALA* 3.8 12.8 - - + +
414A GLN* 3.7 44.6 - - + +
417A SER* 3.6 25.6 - - - +
----------------------------------------------------------
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Residues in contact with LYS 394 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
390A ASN 3.4 10.0 + - - +
391A GLU* 3.0 17.5 + - - +
393A LEU* 1.3 79.3 - - + +
395A LEU* 1.3 63.7 + - + +
397A LYS* 3.6 27.0 - - + +
398A ALA* 3.5 23.0 + - - +
----------------------------------------------------------
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Residues in contact with LEU 395 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
391A GLU* 2.9 26.6 + - + +
392A ALA 4.0 0.2 - - - +
394A LYS* 1.3 76.7 - - - +
396A ALA* 1.3 57.9 + - - +
398A ALA* 3.5 6.0 + - - +
399A ARG* 3.2 26.0 + - - +
198B ALA* 3.6 48.2 - - + +
199B LEU* 3.5 24.3 - - + +
202B GLN* 3.8 17.7 - - + +
----------------------------------------------------------
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Residues in contact with ALA 396 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
392A ALA 3.1 20.0 + - - +
393A LEU 3.8 2.7 - - - +
395A LEU* 1.3 74.2 - - - +
397A LYS* 1.3 66.7 + - - +
399A ARG* 3.2 4.7 + - - +
400A TYR* 3.0 25.5 + - - +
409A ARG* 4.1 22.7 - - + +
410A TYR* 4.2 7.1 + - - +
413A ALA* 4.2 14.6 - - + -
199B LEU* 3.5 18.4 - - + +
----------------------------------------------------------
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Residues in contact with LYS 397 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
183A SER* 5.6 3.8 + - - -
393A LEU* 2.8 18.6 + - + +
394A LYS* 3.6 32.6 - - + +
396A ALA* 1.3 76.7 - - - +
398A ALA* 1.3 54.3 + - + +
400A TYR* 3.3 2.3 + - - +
401A GLU* 2.8 64.3 + - + +
410A TYR* 3.2 49.7 + - + +
----------------------------------------------------------
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Residues in contact with ALA 398 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
394A LYS* 3.5 13.4 + - - +
395A LEU* 3.9 8.3 - - - +
396A ALA 3.3 0.4 - - - -
397A LYS* 1.3 82.0 - - + +
399A ARG* 1.3 56.5 + - - +
401A GLU* 3.8 7.4 - - - +
402A SER* 2.9 31.7 + - - -
----------------------------------------------------------
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Residues in contact with ARG 399 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
395A LEU 3.2 12.1 + - - +
396A ALA* 3.6 9.9 - - - +
397A LYS 3.2 0.4 - - - -
398A ALA* 1.3 73.8 - - - +
400A TYR* 1.3 58.7 + - - +
402A SER* 2.8 18.4 + - - -
404A VAL* 3.0 42.8 + - + +
405A ASP* 3.0 46.5 + - + +
409A ARG* 3.3 18.0 - - - +
197B THR* 4.4 26.9 + - - +
199B LEU* 4.0 19.5 - - - -
406B ASN* 4.5 6.3 - - - +
----------------------------------------------------------
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Residues in contact with TYR 400 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
187A ILE* 3.2 30.4 - - + +
190A ARG* 4.1 17.5 + - - -
200A ASP* 3.2 26.9 + - - +
396A ALA 3.0 15.4 + - - +
397A LYS 3.7 1.6 - - - +
399A ARG* 1.3 75.0 - - - +
401A GLU* 1.3 75.9 + - + +
403A GLY* 2.7 26.2 + - - -
405A ASP* 3.6 16.9 - - + +
406A ASN* 4.3 3.8 - - - +
407A HIS* 3.4 38.4 - + + -
410A TYR* 3.8 32.5 - + + -
----------------------------------------------------------
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Residues in contact with GLU 401 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
186A LEU* 5.3 8.7 - - - +
190A ARG* 3.7 28.3 + - - +
397A LYS* 2.8 56.4 + - + +
398A ALA* 3.9 8.3 - - - +
400A TYR* 1.3 87.6 - - + +
402A SER* 1.3 60.8 + - - +
410A TYR* 5.9 1.5 - - + -
----------------------------------------------------------
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Residues in contact with SER 402 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
398A ALA 2.9 15.9 + - - -
399A ARG* 2.8 23.7 + - - -
401A GLU* 1.3 77.0 - - - +
403A GLY* 1.3 59.7 + - - +
404A VAL* 3.2 19.8 - - - +
----------------------------------------------------------
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Residues in contact with GLY 403 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
399A ARG 3.3 0.2 + - - -
400A TYR 2.7 21.7 + - - -
402A SER* 1.3 73.8 + - - +
404A VAL* 1.3 63.8 + - - +
405A ASP 3.6 4.0 - - - -
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
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