Contacts of the helix formed by residues 349 - 406 (chain A) in PDB entry 5BUO
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with PRO 349 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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347A ASN 5.0 0.2 - - - +
348A LEU* 1.4 96.5 - - + +
350A LYS* 1.4 60.2 + - - +
351A ALA* 3.3 8.3 - - + +
352A ASP* 2.9 39.2 + - - +
353A LYS* 3.2 8.8 + - - +
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Residues in contact with LYS 350 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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348A LEU 3.9 0.2 + - - -
349A PRO* 1.4 68.9 - - - +
351A ALA* 1.3 59.5 + - - +
353A LYS* 3.2 19.6 + - + +
354A LYS* 2.9 29.9 + - - +
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Residues in contact with ALA 351 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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349A PRO* 3.3 7.7 + - + +
350A LYS* 1.3 77.0 - - - +
352A ASP* 1.3 59.9 + - - +
354A LYS* 3.7 6.1 + - - +
355A ALA* 3.1 26.9 + - - +
708A GOL 3.9 18.9 + - - +
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Residues in contact with ASP 352 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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345A ALA* 4.7 1.1 - - - -
348A LEU* 3.7 32.4 - - + +
349A PRO* 2.9 36.6 + - - +
351A ALA* 1.3 76.6 - - - +
353A LYS* 1.3 63.4 + - - +
356A VAL* 3.0 30.4 + - - +
708A GOL 2.6 35.4 + - - -
711A ACT 3.5 6.6 - - + +
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Residues in contact with LYS 353 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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345A ALA* 3.4 32.2 + - + +
346A LYS* 3.6 19.8 + - - +
348A LEU 2.9 26.9 + - - -
349A PRO 3.2 9.0 + - - +
350A LYS* 3.2 17.0 + - + +
352A ASP* 1.3 77.8 - - - +
354A LYS* 1.4 59.8 + - - +
356A VAL* 3.6 2.8 + - - +
357A ILE* 3.3 33.6 + - + +
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Residues in contact with LYS 354 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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350A LYS 2.9 16.1 + - - +
351A ALA* 4.0 7.6 - - - +
353A LYS* 1.4 76.2 - - - +
355A ALA* 1.3 56.2 + - - +
357A ILE* 3.4 13.9 + - - +
358A GLN* 3.0 27.5 + - - +
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Residues in contact with ALA 355 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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351A ALA 3.1 11.4 + - - +
353A LYS 3.4 0.2 - - - -
354A LYS* 1.3 74.1 - - - +
356A VAL* 1.4 55.2 + - - +
358A GLN* 3.6 6.5 - - - -
359A HIS* 2.7 47.1 + - + +
708A GOL 3.3 45.1 - - - +
711A ACT 3.8 4.9 - - + -
715A SO4 4.1 7.4 - - - +
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Residues in contact with VAL 356 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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338A TRP* 4.5 8.1 - - + +
341A ALA* 3.7 30.5 - - + +
342A GLU* 4.1 14.6 - - + +
345A ALA* 4.2 15.7 - - + -
348A LEU* 5.7 1.8 - - + -
352A ASP* 3.0 22.7 + - + +
353A LYS 3.9 4.7 - - - +
355A ALA* 1.4 73.5 - - - +
357A ILE* 1.3 64.8 + - + +
359A HIS 3.3 1.0 + - - -
360A PHE* 3.0 36.0 + - + +
701A ZN 4.3 7.4 - - - -
711A ACT 3.5 24.5 - - + +
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Residues in contact with ILE 357 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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338A TRP* 4.2 19.6 - - + +
342A GLU* 6.5 1.6 - - + -
353A LYS* 3.3 23.4 + - + +
354A LYS* 3.5 11.9 - - - +
356A VAL* 1.3 77.1 - - + +
358A GLN* 1.3 57.3 + - - +
360A PHE* 3.9 0.5 - - - -
361A GLN* 3.0 57.4 + - + +
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Residues in contact with GLN 358 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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354A LYS 3.0 18.1 + - - +
355A ALA* 3.3 7.3 + - - +
357A ILE* 1.3 76.0 - - - +
359A HIS* 1.4 62.8 + - - +
361A GLN* 3.5 12.7 + - - +
362A GLU* 3.1 48.8 + - + +
715A SO4 3.0 37.4 + - - -
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Residues in contact with HIS 359 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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355A ALA* 2.7 27.6 + - + +
356A VAL 4.0 0.9 - - - +
358A GLN* 1.4 73.8 - - - +
360A PHE* 1.3 60.2 + - + +
362A GLU* 3.7 13.4 + - - +
363A LYS* 3.0 26.3 + - - +
701A ZN 2.7 33.4 - - - -
708A GOL 3.2 22.0 + - - -
711A ACT 3.8 5.1 + - - -
712A SCN 3.6 10.5 + - - +
715A SO4 3.0 41.8 + - - -
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Residues in contact with PHE 360 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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334A VAL* 3.8 18.2 - - + -
337A GLU* 3.7 35.2 - - + -
338A TRP* 3.3 58.8 - + + -
341A ALA* 3.6 21.8 - - + -
356A VAL* 3.0 32.8 + - + +
359A HIS* 1.3 77.7 - - - +
361A GLN* 1.3 63.3 + - - +
362A GLU 3.3 0.2 - - - -
363A LYS* 3.2 7.5 + - + +
364A VAL* 3.0 28.6 + - - +
701A ZN 4.0 17.0 - - - -
712A SCN 4.2 16.2 - - - -
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Residues in contact with GLN 361 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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338A TRP* 4.1 18.1 - - + -
357A ILE* 3.0 39.9 + - - +
358A GLN* 3.8 12.1 - - - +
360A PHE* 1.3 75.0 - - - +
362A GLU* 1.4 57.5 + - + +
364A VAL* 3.4 7.7 + - - +
365A GLU* 3.0 33.7 + - - +
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Residues in contact with GLU 362 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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358A GLN* 3.1 48.5 + - + +
359A HIS* 3.9 14.7 - - - +
361A GLN* 1.4 72.8 - - + +
363A LYS* 1.3 60.9 + - - +
365A GLU* 3.9 6.4 - - - +
366A SER* 2.9 32.4 + - - -
715A SO4 4.6 1.7 + - - -
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Residues in contact with LYS 363 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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330A ARG* 4.2 16.1 - - - +
334A VAL* 3.8 31.9 - - + -
337A GLU* 5.9 1.3 - - - +
359A HIS 3.0 19.0 + - - +
360A PHE* 3.2 10.9 + - + +
362A GLU* 1.3 77.3 - - - +
364A VAL* 1.3 61.6 + - - +
366A SER* 3.6 10.5 + - - -
367A LEU* 3.1 41.5 + - - +
370A GLU* 4.7 6.3 + - - -
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Residues in contact with VAL 364 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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331A MET* 3.9 17.8 - - + +
334A VAL* 3.8 18.4 - - + -
335A MET* 4.3 9.9 - - - -
338A TRP* 3.7 23.1 - - + -
360A PHE 3.0 17.0 + - - +
361A GLN* 4.0 8.7 - - - +
363A LYS* 1.3 73.9 - - - +
365A GLU* 1.4 60.4 + - - +
367A LEU* 3.1 9.4 + - - +
368A GLU* 2.9 38.1 + - + +
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Residues in contact with GLU 365 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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361A GLN* 3.0 19.6 + - - +
362A GLU* 3.9 7.6 - - - +
364A VAL* 1.4 73.6 - - + +
366A SER* 1.3 65.6 + - - +
368A GLU* 3.2 11.6 + - + +
369A GLN* 3.0 23.9 + - - +
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Residues in contact with SER 366 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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362A GLU 2.9 19.9 + - - -
363A LYS* 3.6 17.1 + - - +
365A GLU* 1.3 76.2 - - - +
367A LEU* 1.3 55.7 + - - +
369A GLN* 3.5 6.3 + - - +
370A GLU* 2.9 43.6 + - - +
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Residues in contact with LEU 367 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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327A HIS* 3.6 9.1 + - + +
330A ARG* 3.4 65.5 + - + +
331A MET* 3.8 24.7 - - + +
334A VAL* 3.5 30.1 - - + -
363A LYS* 3.1 28.8 + - - +
364A VAL* 3.1 8.3 + - - +
366A SER* 1.3 72.6 - - - +
368A GLU* 1.3 64.7 + - - +
370A GLU* 3.4 5.1 + - - +
371A ALA* 3.1 25.6 + - - +
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Residues in contact with GLU 368 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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327A HIS* 3.1 7.6 + - - -
331A MET* 3.4 7.8 - - - +
364A VAL* 2.9 28.8 + - + +
365A GLU* 3.2 11.9 + - + +
367A LEU* 1.3 77.8 - - - +
369A GLN* 1.4 55.5 - - - +
371A ALA* 3.4 3.3 + - - +
372A ALA* 3.0 27.8 + - - +
375A ARG* 4.7 2.1 + - - -
702A ZN 1.9 38.6 - - - -
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Residues in contact with GLN 369 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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365A GLU 3.0 15.7 + - - +
366A SER* 3.9 6.3 - - - +
368A GLU* 1.4 73.1 - - - +
370A GLU* 1.3 64.6 + - - +
372A ALA* 3.4 11.7 + - - +
373A ASN* 3.0 56.0 + - - +
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Residues in contact with GLU 370 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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330A ARG* 2.8 48.2 + - - +
363A LYS* 4.7 4.5 + - - -
366A SER* 2.9 35.9 + - - +
367A LEU* 3.4 6.6 + - - +
369A GLN* 1.3 77.6 - - - +
371A ALA* 1.4 55.5 + - - +
373A ASN* 3.3 6.6 + - - +
374A GLU* 3.0 40.1 + - - +
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Residues in contact with ALA 371 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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323A LEU* 4.2 4.8 - - + +
327A HIS* 3.4 41.5 - - + +
367A LEU 3.1 10.2 + - - +
368A GLU 3.6 4.7 - - - +
370A GLU* 1.4 72.7 - - - +
372A ALA* 1.4 59.1 + - - +
374A GLU* 3.3 12.1 + - - +
375A ARG* 2.9 50.7 + - - +
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Residues in contact with ALA 372 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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368A GLU 3.0 16.8 + - - +
369A GLN* 3.6 20.2 - - - +
370A GLU 3.4 0.2 - - - -
371A ALA* 1.4 74.2 - - - +
373A ASN* 1.3 58.9 + - - +
375A ARG* 3.4 18.2 + - - +
376A GLN* 3.0 30.2 + - - +
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Residues in contact with ASN 373 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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369A GLN* 3.0 48.2 + - - +
370A GLU* 3.7 5.9 - - - +
372A ALA* 1.3 74.7 - - - +
374A GLU* 1.3 58.7 + - + +
376A GLN* 3.7 17.8 + - - +
377A GLN* 3.1 32.1 + - - +
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Residues in contact with GLU 374 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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323A LEU* 3.6 25.5 - - + +
326A LYS* 2.9 34.3 + - - +
330A ARG* 5.0 4.7 + - - -
370A GLU* 3.0 27.5 + - - +
371A ALA* 3.3 8.4 + - - +
373A ASN* 1.3 72.1 - - - +
375A ARG* 1.4 55.8 + - - +
377A GLN* 3.5 5.4 + - - +
378A LEU* 2.9 35.7 + - - +
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Residues in contact with ARG 375 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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323A LEU* 3.7 11.2 - - + +
324A GLU* 2.7 34.7 + - - +
327A HIS* 4.1 10.7 + - - -
368A GLU 4.7 1.8 + - - -
371A ALA* 2.9 32.9 + - - +
372A ALA* 3.5 33.7 - - - +
374A GLU* 1.4 73.2 - - - +
376A GLN* 1.3 52.8 + - - +
378A LEU* 3.1 4.0 + - - +
379A VAL* 2.8 40.3 + - - +
713A SCN 3.7 34.1 - - - +
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Residues in contact with GLN 376 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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372A ALA 3.0 14.3 + - - +
373A ASN* 3.8 20.8 - - - +
375A ARG* 1.3 78.3 - - - +
377A GLN* 1.3 59.5 + - + +
379A VAL* 3.3 6.4 + - - +
380A GLU* 3.0 55.5 + - + +
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Residues in contact with GLN 377 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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373A ASN 3.1 19.2 + - - +
374A GLU* 3.9 4.9 - - - +
376A GLN* 1.3 74.9 - - + +
378A LEU* 1.3 60.3 + - - +
380A GLU* 3.8 19.9 + - - +
381A THR* 3.0 46.6 + - - -
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Residues in contact with LEU 378 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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316A PHE* 4.1 16.4 - - + -
319A ALA* 3.9 20.4 - - + -
320A LYS* 3.7 26.2 - - - +
323A LEU* 4.0 10.3 - - + -
374A GLU 2.9 19.6 + - - +
375A ARG 3.1 4.2 + - - +
377A GLN* 1.3 74.0 - - - +
379A VAL* 1.3 64.8 + - - +
381A THR* 4.1 4.5 - - - -
382A HIS* 3.2 25.1 + - - +
713A SCN 3.4 23.6 - - - -
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Residues in contact with VAL 379 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
316A PHE* 4.1 14.8 - - + -
375A ARG 2.8 19.9 + - - +
376A GLN* 3.8 6.1 - - - +
378A LEU* 1.3 75.1 - - - +
380A GLU* 1.3 56.9 + - + +
382A HIS* 3.4 3.1 + - + +
383A MET* 2.9 34.3 + - + +
436A HIS* 4.1 28.0 - - + +
439A HIS* 5.3 2.7 - - + +
447A LYS* 6.4 0.4 - - - +
703A ZN 4.2 4.0 - - - -
713A SCN 3.4 32.3 - - - +
716A MG 4.5 4.9 - - - -
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Residues in contact with GLU 380 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
376A GLN* 3.0 48.0 + - + +
377A GLN* 3.8 21.8 + - - +
379A VAL* 1.3 77.3 - - + +
381A THR* 1.3 60.9 + - - +
383A MET* 3.5 5.2 + - - +
384A ALA* 3.1 25.8 + - - +
----------------------------------------------------------
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Residues in contact with THR 381 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
377A GLN* 3.0 32.6 + - - -
378A LEU* 4.2 4.3 - - - -
380A GLU* 1.3 74.0 - - - +
382A HIS* 1.3 58.2 + - - +
384A ALA* 3.9 4.4 - - - +
385A ARG* 3.1 32.3 + - + +
----------------------------------------------------------
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Residues in contact with HIS 382 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
312A GLU* 3.6 10.0 + - - +
313A HIS* 3.1 27.7 + - - -
316A PHE* 3.4 40.2 - + + +
378A LEU* 3.2 19.6 + - + +
379A VAL* 3.7 3.6 - - + +
381A THR* 1.3 74.5 - - - +
383A MET* 1.3 70.3 + - - +
385A ARG* 3.8 4.3 - - - +
386A VAL* 2.9 35.5 + - + +
432A HIS* 3.2 7.0 + - - -
704A ZN 1.9 37.7 - - - -
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Residues in contact with MET 383 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
379A VAL* 2.9 29.3 + - + +
380A GLU* 4.0 5.2 - - - +
381A THR 3.5 0.2 - - - -
382A HIS* 1.3 79.3 - - - +
384A ALA* 1.4 56.8 + - - +
386A VAL* 3.2 6.1 - - + +
387A GLU* 2.9 50.2 + - + +
432A HIS* 3.6 31.9 - - + +
433A THR* 5.6 3.6 - - - -
436A HIS* 3.6 52.5 - - + +
714A SCN 5.3 6.1 - - - -
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Residues in contact with ALA 384 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
380A GLU 3.1 18.2 + - - +
381A THR* 3.9 5.4 - - - +
383A MET* 1.4 74.7 - - - +
385A ARG* 1.3 61.2 + - - +
387A GLU* 4.0 4.4 - - - +
388A ALA* 3.1 25.6 + - - +
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Residues in contact with ARG 385 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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312A GLU* 5.7 7.6 - - + -
381A THR* 3.1 21.5 + - + +
382A HIS* 3.8 6.5 - - - +
384A ALA* 1.3 74.6 - - - +
386A VAL* 1.3 59.2 + - - +
388A ALA* 3.9 4.5 - - - +
389A MET* 3.1 29.7 + - - +
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Residues in contact with VAL 386 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
312A GLU* 5.0 6.2 - - + +
313A HIS* 5.4 3.1 - - + +
382A HIS* 2.9 30.7 + - + +
383A MET* 3.2 11.7 - - - +
385A ARG* 1.3 74.6 - - - +
387A GLU* 1.3 66.0 + - + +
389A MET* 3.5 17.5 + - + +
390A LEU* 2.8 49.3 + - + +
432A HIS* 3.2 43.7 - - + +
----------------------------------------------------------
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Residues in contact with GLU 387 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
383A MET* 2.9 35.4 + - + +
384A ALA* 4.1 4.3 - - - +
386A VAL* 1.3 78.3 - - + +
388A ALA* 1.3 58.2 - - - +
390A LEU* 3.8 5.3 - - + +
391A ASN* 2.9 47.9 + - - +
429A ASP* 3.6 5.6 - - - +
432A HIS* 5.8 1.3 - - - +
433A THR* 5.3 0.4 - - - -
458A HIS* 3.2 31.3 + - - -
706A ZN 3.4 10.6 - - - -
709A GOL 3.1 26.9 + - - +
714A SCN 4.4 6.9 - - - -
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Residues in contact with ALA 388 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
384A ALA 3.1 18.5 + - - +
385A ARG* 3.9 4.9 - - - +
387A GLU* 1.3 74.6 - - - +
389A MET* 1.3 62.9 + - - +
391A ASN* 3.4 8.8 + - - +
392A ASP* 3.0 32.5 + - - +
395A ARG* 4.5 1.3 + - - +
----------------------------------------------------------
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Residues in contact with MET 389 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
310A GLU 3.6 20.0 - - - +
311A ASN* 4.9 0.9 - - - +
312A GLU* 3.6 32.5 - - + +
313A HIS 5.7 0.4 - - - +
385A ARG 3.1 18.8 + - - +
386A VAL* 3.8 10.5 - - + +
388A ALA* 1.3 74.3 - - - +
390A LEU* 1.4 79.7 + - - +
392A ASP* 3.2 9.6 + - - +
393A ARG* 3.1 64.1 + - - +
----------------------------------------------------------
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Residues in contact with LEU 390 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
386A VAL* 2.8 42.3 + - + +
387A GLU* 4.1 6.3 - - + +
389A MET* 1.4 83.5 - - - +
391A ASN* 1.3 65.2 - - - +
393A ARG* 3.7 9.8 + - + +
394A ARG* 3.2 24.8 + - - +
425A ALA* 4.7 6.8 - - - +
428A LYS* 3.8 31.9 - - + +
429A ASP* 3.7 39.3 - - + +
432A HIS* 4.1 11.2 - - + +
----------------------------------------------------------
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Residues in contact with ASN 391 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
387A GLU* 2.9 35.1 + - - +
388A ALA* 3.6 5.5 - - - +
389A MET 3.3 0.2 - - - -
390A LEU* 1.3 77.0 - - - +
392A ASP* 1.4 50.8 + - - +
394A ARG* 3.0 28.8 + - - +
395A ARG* 2.8 64.5 + - - +
429A ASP* 4.7 0.7 - - - +
706A ZN 4.0 15.8 - - - -
709A GOL 6.4 0.6 - - - -
----------------------------------------------------------
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Residues in contact with ASP 392 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
388A ALA* 3.0 19.8 + - - +
389A MET* 3.5 10.8 - - - +
391A ASN* 1.4 72.4 - - - +
393A ARG* 1.3 66.8 + - + +
395A ARG* 2.8 30.1 + - - +
396A LEU* 3.1 25.1 + - - +
----------------------------------------------------------
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Residues in contact with ARG 393 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
310A GLU* 3.8 26.5 - - - +
389A MET* 3.1 49.4 + - + +
390A LEU* 4.1 11.9 - - + +
392A ASP* 1.3 78.1 - - - +
394A ARG* 1.4 52.8 + - - +
396A LEU* 3.5 9.2 + - - +
397A ALA* 2.9 35.5 + - - +
425A ALA* 4.5 10.3 - - + -
----------------------------------------------------------
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Residues in contact with ARG 394 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
390A LEU 3.2 15.2 + - - +
391A ASN* 3.0 40.3 + - - +
393A ARG* 1.4 77.1 - - - +
395A ARG* 1.3 79.8 + - - +
397A ALA* 3.9 1.2 - - - +
398A LEU* 3.0 36.2 + - - +
422A TYR* 4.2 9.9 - - + -
425A ALA* 4.0 22.2 - - + +
426A GLU* 3.6 24.4 + - - +
429A ASP* 5.3 3.9 + - + +
465A ARG* 3.5 50.6 - - - +
----------------------------------------------------------
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Residues in contact with ARG 395 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
388A ALA* 4.5 2.0 + - - +
391A ASN* 2.8 52.8 + - - +
392A ASP* 2.8 33.2 + - - +
393A ARG 3.4 0.2 - - - -
394A ARG* 1.3 90.5 - - - +
396A LEU* 1.4 56.2 + - - +
398A LEU* 3.7 4.9 - - - +
399A GLU* 3.0 45.7 + - - +
543B LEU* 4.7 16.2 - - + +
----------------------------------------------------------
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Residues in contact with LEU 396 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
392A ASP 3.1 14.7 + - - +
393A ARG* 3.7 7.2 - - - +
395A ARG* 1.4 76.2 - - - +
397A ALA* 1.4 58.8 + - - +
398A LEU 3.3 0.2 + - - -
399A GLU* 3.4 14.6 + - + +
400A ASN* 3.0 53.7 + - - +
----------------------------------------------------------
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Residues in contact with ALA 397 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
393A ARG 2.9 21.2 + - - +
394A ARG 4.2 2.5 - - - +
396A LEU* 1.4 73.2 - - - +
398A LEU* 1.4 59.4 + - - +
400A ASN* 3.8 9.7 - - - +
401A TYR* 3.2 22.5 + - - +
418A MET 3.8 3.3 - - - +
421A LYS* 3.7 17.0 - - + +
422A TYR* 3.7 31.6 - - - +
425A ALA* 4.4 4.9 - - + -
----------------------------------------------------------
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Residues in contact with LEU 398 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
394A ARG* 3.0 22.0 + - - +
395A ARG* 3.7 5.4 - - - +
397A ALA* 1.4 73.7 - - - +
399A GLU* 1.4 59.1 + - - +
401A TYR* 3.1 20.6 + - + +
402A ILE* 2.9 44.1 + - + +
422A TYR* 3.6 22.4 - - + +
465A ARG* 5.5 8.7 - - - -
469A SER* 3.5 23.8 - - - +
472A LEU* 5.2 0.2 - - + -
540B LEU* 3.7 17.3 - - + -
543B LEU* 3.5 32.1 - - + -
----------------------------------------------------------
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Residues in contact with GLU 399 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
395A ARG* 3.0 36.7 + - - +
396A LEU* 3.7 14.3 + - + +
398A LEU* 1.4 73.7 - - - +
400A ASN* 1.4 57.9 + - - +
402A ILE* 3.4 9.0 + - - +
403A THR* 3.0 32.7 + - - -
543B LEU* 3.5 30.9 - - + +
----------------------------------------------------------
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Residues in contact with ASN 400 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
396A LEU* 3.0 42.7 + - - +
397A ALA* 3.8 8.6 - - - +
399A GLU* 1.4 75.9 - - - +
401A TYR* 1.3 53.1 + - - +
403A THR* 3.1 8.6 + - - +
404A ALA* 2.8 34.5 + - - +
414A HIS* 5.5 0.2 + - - -
418A MET* 3.8 28.0 - - - +
421A LYS* 6.0 1.6 - - - +
----------------------------------------------------------
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Residues in contact with TYR 401 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
397A ALA 3.2 12.8 + - - +
398A LEU* 3.1 25.7 + - + +
400A ASN* 1.3 77.5 - - - +
402A ILE* 1.3 64.9 + - + +
404A ALA* 3.5 2.3 + - - +
405A LEU* 3.2 45.7 + - + +
415A VAL* 4.0 18.4 - - + -
418A MET* 3.8 17.9 - - - +
419A LEU* 3.5 43.8 - - + +
422A TYR* 4.6 6.1 - + + -
469A SER* 2.8 36.7 + - - -
470A LEU* 3.9 0.2 - - - -
472A LEU* 4.0 7.0 - - + -
473A LEU* 3.4 27.9 + - + +
----------------------------------------------------------
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Residues in contact with ILE 402 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
398A LEU* 2.9 34.8 + - + +
399A GLU* 3.9 8.1 - - - +
401A TYR* 1.3 74.8 - - + +
403A THR* 1.4 65.4 + - - +
405A LEU* 3.4 16.2 + - + +
406A GLN* 3.4 26.9 + - - +
472A LEU* 4.1 20.6 - - + -
540B LEU* 3.8 29.6 - - + -
543B LEU* 5.0 3.4 - - + -
545B PRO* 4.4 28.3 - - + +
546B TRP* 4.5 10.3 - - + -
----------------------------------------------------------
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Residues in contact with THR 403 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
399A GLU 3.0 15.1 + - - -
400A ASN* 3.1 11.2 + - - +
402A ILE* 1.4 76.8 - - - +
404A ALA* 1.3 63.0 + - - +
406A GLN* 3.1 34.5 + - + +
407A ALA* 3.7 4.3 + - - +
----------------------------------------------------------
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Residues in contact with ALA 404 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
400A ASN 2.8 19.6 + - - +
401A TYR 3.7 5.4 - - - +
402A ILE 3.4 0.2 - - - -
403A THR* 1.3 73.6 - - - +
405A LEU* 1.3 59.8 + - - +
406A GLN 3.4 0.7 + - - -
407A ALA* 3.4 20.6 + - - +
410A PRO* 5.9 0.2 - - - +
411A ARG* 5.0 2.3 + - - +
414A HIS* 3.6 34.0 + - + +
415A VAL* 3.4 25.6 - - + +
418A MET* 4.1 12.6 - - + -
----------------------------------------------------------
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Residues in contact with LEU 405 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
401A TYR* 3.2 45.2 + - + +
402A ILE* 3.6 13.2 - - + +
403A THR 3.2 0.6 - - - -
404A ALA* 1.3 74.6 - - - +
406A GLN* 1.3 58.5 + - - +
407A ALA 3.4 4.0 + - - +
415A VAL* 3.8 28.7 - - + -
472A LEU* 3.8 35.2 - - + +
473A LEU* 4.3 11.2 - - + -
476A VAL* 4.3 35.3 - - + +
479A VAL* 4.9 3.6 - - + -
546B TRP* 6.4 1.1 - - + -
----------------------------------------------------------
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Residues in contact with GLN 406 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
402A ILE* 3.4 25.3 + - - +
403A THR* 3.1 29.2 + - + +
405A LEU* 1.3 77.3 - - + +
407A ALA* 1.3 63.8 + - - +
408A VAL* 3.5 10.6 + - - +
545B PRO 4.6 11.3 + - - -
546B TRP* 4.7 9.1 - - - -
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il