Contacts of the helix formed by residues 36 - 102 (chain B) in PDB entry 5EOA
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with THR 36 (chain B).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
30B PRO* 4.9 16.4 - - + -
34B THR 4.7 3.4 - - - +
35B PHE* 1.3 77.1 - - - +
37B PRO* 1.3 69.9 - - - +
38B GLU* 3.5 7.6 + - - +
39B GLU* 3.0 41.4 + - - +
40B LEU* 2.8 25.2 + - - +
683D LEU* 4.8 2.2 - - - -
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Residues in contact with PRO 37 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
36B THR* 1.3 88.1 - - - +
38B GLU* 1.3 57.3 + - - +
40B LEU* 3.2 10.2 + - + +
41B LEU* 2.9 33.6 + - - +
678C PRO* 5.3 11.0 - - + -
679C SER 6.3 0.2 - - - +
682C THR* 4.1 24.7 - - + +
683D LEU* 4.4 22.0 - - + -
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Residues in contact with GLU 38 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
36B THR* 3.2 7.2 + - - +
37B PRO* 1.3 80.3 - - - +
39B GLU* 1.3 58.6 + - + +
41B LEU* 3.5 21.8 + - - +
42B GLN* 3.0 32.1 + - - +
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Residues in contact with GLU 39 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
32B LEU 5.5 1.6 - - - +
34B THR 3.9 3.5 - - - +
35B PHE* 3.3 27.9 - - + -
36B THR* 3.0 45.8 + - - +
38B GLU* 1.3 76.1 - - + +
40B LEU* 1.3 63.9 + - - +
42B GLN* 3.3 8.5 - - - +
43B GLN* 3.0 27.7 + - - +
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Residues in contact with LEU 40 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
35B PHE* 3.9 27.0 - - + +
36B THR 2.8 11.8 + - - +
37B PRO* 3.2 13.0 - - + +
39B GLU* 1.3 73.6 - - - +
41B LEU* 1.3 66.2 + - - +
43B GLN* 3.1 6.5 + - - +
44B MET* 3.0 20.8 + - - +
682C THR* 5.2 6.3 - - + -
686C MET* 3.6 28.5 - - + -
683D LEU* 4.0 14.6 - - + -
686D MET* 3.7 46.0 - - + -
687D THR 4.4 2.7 - - - +
690D MET* 4.1 14.4 - - + +
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Residues in contact with LEU 41 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
37B PRO 2.9 15.3 + - - +
38B GLU* 3.7 26.0 - - - +
40B LEU* 1.3 76.0 - - - +
42B GLN* 1.3 56.5 - - - +
44B MET* 3.1 9.5 + - + +
45B LYS* 3.0 33.5 + - - +
681C ASN* 4.9 3.8 - - - +
682C THR* 3.7 38.4 - - + +
685C GLU* 3.4 44.4 - - + +
686C MET* 3.6 24.7 - - - +
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Residues in contact with GLN 42 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
38B GLU* 3.0 24.5 + - + +
39B GLU* 3.3 14.4 - - - +
40B LEU 3.1 0.2 - - - -
41B LEU* 1.3 75.4 - - - +
43B GLN* 1.3 69.8 + - - +
45B LYS* 3.0 16.3 + - - +
46B GLU* 3.0 24.3 + - - +
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Residues in contact with GLN 43 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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35B PHE* 3.4 43.3 - - + -
39B GLU 3.0 13.4 + - - +
40B LEU* 3.4 9.6 - - - +
42B GLN* 1.3 80.2 - - - +
44B MET* 1.3 56.7 + - - +
46B GLU* 3.1 27.2 + - - +
47B LEU* 3.0 34.0 + - + +
690D MET* 3.8 22.9 - - + +
691D LYS* 5.5 1.7 - - - +
694D LYS* 3.9 28.5 + - - +
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Residues in contact with MET 44 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
40B LEU 3.0 11.7 + - - +
41B LEU* 3.1 15.0 + - + +
43B GLN* 1.3 76.3 - - - +
45B LYS* 1.3 59.3 - - + +
47B LEU* 3.2 3.0 + - - +
48B LEU* 2.9 36.7 + - + +
685C GLU* 4.9 4.9 - - + +
686C MET* 3.4 34.5 - - + +
689C GLY* 3.6 25.8 - - - -
690C MET* 3.7 34.5 - - - +
693C LEU* 3.7 17.3 - - + -
690D MET* 3.4 16.3 - - + +
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Residues in contact with LYS 45 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
41B LEU* 3.0 19.7 + - - +
42B GLN* 3.0 16.8 + - - +
44B MET* 1.3 74.8 - - + +
46B GLU* 1.3 66.0 + - - +
48B LEU* 3.2 14.2 + - + +
49B THR* 3.0 26.3 + - - -
685C GLU* 3.1 29.0 + - - +
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Residues in contact with GLU 46 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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42B GLN* 3.0 14.0 + - + +
43B GLN* 3.1 36.2 + - - +
45B LYS* 1.3 77.2 - - - +
47B LEU* 1.3 57.5 + - + +
49B THR* 3.3 8.6 + - - -
50B LYS* 3.0 55.6 + - + +
694D LYS* 3.3 30.0 + - - -
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Residues in contact with LEU 47 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
43B GLN* 3.0 19.4 + - + +
44B MET 3.2 5.1 + - - +
46B GLU* 1.3 76.3 - - + +
48B LEU* 1.3 66.2 + - - +
50B LYS* 4.5 8.3 - - + -
51B ASN* 3.0 27.5 + - - +
693C LEU* 3.6 17.7 - - + +
690D MET* 3.8 37.5 - - + +
693D LEU* 4.0 24.2 - - + -
694D LYS* 3.8 29.4 - - + -
697D MET* 3.6 27.2 - - + +
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Residues in contact with LEU 48 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
44B MET* 2.9 26.3 + - + +
45B LYS* 3.4 15.3 - - + +
47B LEU* 1.3 77.3 - - - +
49B THR* 1.3 63.6 + - - +
51B ASN* 3.7 1.4 - - - +
52B HIS* 2.9 25.7 + - - +
689C GLY* 3.8 24.5 - - - +
692C LYS* 3.5 45.3 - - + +
693C LEU* 3.6 17.3 - - + -
696C GLU* 4.8 2.8 - - - +
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Residues in contact with THR 49 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
45B LYS 3.0 15.4 + - - -
46B GLU* 3.4 11.4 - - - -
48B LEU* 1.3 76.1 - - - +
50B LYS* 1.3 60.3 + - + +
52B HIS* 3.2 6.9 + - - +
53B GLN* 2.9 54.2 + - + +
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Residues in contact with LYS 50 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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46B GLU* 3.0 45.3 + - + +
47B LEU* 4.0 13.2 - - + +
49B THR* 1.3 81.8 - - + +
51B ASN* 1.3 54.0 + - - +
53B GLN* 3.0 18.6 + - - +
54B LEU* 2.8 34.8 + - - +
694D LYS* 4.2 10.8 - - + +
697D MET* 4.1 15.5 - - + -
698D GLU* 3.8 30.2 + - + +
701D VAL* 5.9 3.9 - - + +
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Residues in contact with ASN 51 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
51A ASN* 4.7 0.7 + - - +
47B LEU 3.0 19.8 + - - +
48B LEU 3.7 2.9 - - - +
50B LYS* 1.3 75.4 - - - +
52B HIS* 1.3 63.2 + - - +
54B LEU* 3.4 10.5 + - - +
55B LYS* 3.0 21.3 + - - +
693C LEU* 3.9 15.9 + - + +
696C GLU* 3.1 43.7 + - + +
697C MET* 3.8 28.0 - - - +
700C VAL* 4.3 3.5 - - - +
697D MET* 3.1 26.1 - - + +
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Residues in contact with HIS 52 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
48B LEU 2.9 14.0 + - - +
49B THR* 3.5 10.8 - - - +
51B ASN* 1.3 74.3 - - - +
53B GLN* 1.3 69.2 + - + +
55B LYS* 3.1 32.2 + - - +
56B GLU* 3.2 30.2 + - + +
692C LYS* 6.1 0.2 + - - -
696C GLU* 3.0 28.2 + - - +
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Residues in contact with GLN 53 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
49B THR* 2.9 40.4 + - + +
50B LYS* 3.0 17.8 + - - +
52B HIS* 1.3 79.2 - - + +
54B LEU* 1.3 57.0 + - - +
56B GLU* 3.2 7.9 + - - +
57B ALA* 2.8 30.2 + - - +
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Residues in contact with LEU 54 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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51A ASN* 5.2 3.4 - - - +
54A LEU* 4.3 4.7 - - + -
50B LYS 2.8 15.5 + - - +
51B ASN* 3.5 19.5 - - - +
53B GLN* 1.3 72.3 - - - +
55B LYS* 1.3 58.1 + - - +
57B ALA* 3.6 5.5 - - - +
58B MET* 2.8 37.1 + - + +
697C MET* 5.1 1.8 - - - -
700C VAL* 4.0 27.8 - - + -
697D MET* 5.6 6.7 - - + +
700D VAL* 3.5 35.9 - - + -
701D VAL* 4.4 19.1 - - + +
704D LEU* 3.8 21.3 - - + -
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Residues in contact with LYS 55 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
51B ASN 3.0 13.3 + - - +
52B HIS* 3.1 22.0 + - - +
54B LEU* 1.3 75.9 - - - +
56B GLU* 1.3 70.3 + - - +
58B MET* 3.1 6.1 + - - +
59B LYS* 2.9 43.5 + - + +
692C LYS* 5.7 0.4 - - - +
696C GLU* 3.3 46.4 + - + +
699C GLY* 4.9 10.5 - - - +
700C VAL* 4.1 22.9 - - + +
703C GLU* 4.7 2.8 - - + +
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Residues in contact with GLU 56 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
52B HIS* 3.2 30.0 + - + +
53B GLN* 3.7 7.4 - - - +
55B LYS* 1.3 92.3 - - - +
57B ALA* 1.3 62.1 + - - +
59B LYS* 3.3 37.6 + - - +
60B LEU* 3.0 31.8 + - + +
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Residues in contact with ALA 57 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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53B GLN 2.8 16.7 + - - +
54B LEU* 3.6 8.3 - - - +
56B GLU* 1.3 75.9 - - - +
58B MET* 1.3 58.6 + - - +
60B LEU* 3.1 11.5 + - - +
61B ASN* 2.8 27.0 + - - +
704D LEU* 3.6 21.8 - - + +
708D ASN* 5.2 4.4 + - - +
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Residues in contact with MET 58 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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54A LEU* 4.9 0.2 - - - -
58A MET* 3.4 29.2 - - + -
54B LEU* 2.8 26.2 + - + +
55B LYS* 3.5 5.2 - - - +
57B ALA* 1.3 73.4 - - - +
59B LYS* 1.3 55.5 + - - +
61B ASN* 3.0 17.9 + - - +
62B ASN* 2.7 42.4 + - - +
700C VAL* 4.0 25.8 - - + +
703C GLU* 3.6 30.7 - - + +
704C LEU* 3.8 17.9 - - + +
707C ASN* 4.9 4.3 - - + +
704D LEU* 4.0 18.8 - - + -
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Residues in contact with LYS 59 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
55B LYS* 2.9 27.3 + - + +
56B GLU* 3.3 44.2 + - - +
58B MET* 1.3 75.2 - - - +
60B LEU* 1.3 58.1 + - + +
62B ASN* 3.4 2.1 + - - +
63B GLN* 3.1 47.2 + - - +
703C GLU* 3.1 36.9 + - + +
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Residues in contact with LEU 60 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
56B GLU* 3.0 21.7 + - + +
57B ALA* 3.3 11.9 - - - +
59B LYS* 1.3 73.6 - - + +
61B ASN* 1.3 66.4 + - - +
63B GLN* 3.3 26.6 + - - +
64B ALA* 3.0 22.7 + - - +
708D ASN* 6.3 0.4 - - - +
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Residues in contact with ASN 61 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
57B ALA 2.8 13.6 + - - +
58B MET* 3.0 14.1 + - - +
60B LEU* 1.3 78.0 - - - +
62B ASN* 1.3 57.9 + - - +
64B ALA* 3.1 7.1 + - - +
65B MET* 2.9 25.6 + - - +
707C ASN* 2.7 32.7 + - - -
704D LEU* 3.6 24.5 - - + +
707D ASN* 2.8 23.9 + - - +
708D ASN* 2.9 29.5 + - - +
711D LEU* 3.3 8.8 - - - +
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Residues in contact with ASN 62 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
58B MET* 2.7 16.8 + - - +
59B LYS 3.9 3.1 - - - +
61B ASN* 1.3 71.8 - - - +
63B GLN* 1.3 65.1 + - + +
65B MET* 3.2 6.6 + - - +
66B LYS* 3.1 30.6 + - - +
703C GLU* 2.8 57.1 + - - +
706C GLU* 3.8 16.0 - - + +
707C ASN* 2.8 39.9 + - - +
710C ILE* 4.3 1.4 - - - +
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Residues in contact with GLN 63 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
59B LYS* 3.1 35.2 + - - +
60B LEU* 3.3 27.0 - - + +
61B ASN 3.3 0.2 - - - -
62B ASN* 1.3 75.7 - - + +
64B ALA* 1.3 63.0 + - - +
66B LYS* 3.4 15.4 + - - +
67B GLY* 3.0 19.2 + - - -
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Residues in contact with ALA 64 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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60B LEU 3.0 14.3 + - - +
61B ASN* 3.3 10.5 - - - +
63B GLN* 1.3 74.8 - - - +
65B MET* 1.3 64.2 + - - +
67B GLY* 3.1 2.5 + - - +
68B ARG* 2.9 32.4 + - + +
708D ASN* 5.1 2.7 - - - +
711D LEU* 3.9 17.7 - - + -
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Residues in contact with MET 65 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
65A MET* 3.8 19.5 - - + +
61B ASN 2.9 12.8 + - - +
62B ASN* 3.4 10.3 - - - +
64B ALA* 1.3 75.7 - - - +
66B LYS* 1.3 57.9 + - - +
68B ARG* 3.3 1.7 + - - +
69B PHE* 2.8 30.5 + - - +
707C ASN* 3.2 58.6 - - - +
710C ILE* 3.8 20.0 - - + +
711C LEU* 3.6 23.6 - - + +
714C PHE* 4.3 8.9 - - + -
707D ASN* 4.9 1.6 - - - +
711D LEU* 3.7 28.9 - - + +
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Residues in contact with LYS 66 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
62B ASN* 3.1 20.2 + - - +
63B GLN* 3.5 15.6 - - - +
65B MET* 1.3 77.4 - - - +
67B GLY* 1.3 57.6 + - - +
69B PHE* 3.1 9.2 + - + +
70B GLU* 2.9 49.1 + - + +
706C GLU* 3.7 32.6 + - - +
710C ILE* 4.1 16.5 - - + +
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Residues in contact with GLY 67 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
63B GLN 3.0 13.9 + - - -
64B ALA* 3.1 4.0 + - - -
66B LYS* 1.3 76.9 - - - +
68B ARG* 1.3 56.9 + - - +
70B GLU* 3.4 11.9 + - - +
71B GLU* 2.9 40.5 + - - +
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Residues in contact with ARG 68 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
64B ALA* 2.9 21.9 + - - +
65B MET 3.7 3.1 - - - +
67B GLY* 1.3 72.1 - - - +
69B PHE* 1.3 60.3 + - - +
71B GLU* 2.8 42.5 + - - +
72B LEU* 2.8 36.9 + - + +
714C PHE* 4.5 5.6 - - + -
711D LEU* 2.8 47.9 + - + +
712D GLU* 3.9 25.3 + - - +
714D PHE* 4.1 11.0 - - + -
715D GLY* 3.4 26.6 - - - +
719D MET* 5.8 2.4 - - - +
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Residues in contact with PHE 69 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
65B MET 2.8 14.6 + - - +
66B LYS* 3.3 10.8 - - + +
68B ARG* 1.3 75.8 - - - +
70B GLU* 1.3 67.6 + - + +
72B LEU* 3.4 4.3 + - - +
73B SER* 2.8 40.7 + - - -
710C ILE* 4.1 10.5 - - + -
713C ARG* 3.6 49.8 - - + -
714C PHE* 3.9 30.0 - + + -
716C SER* 5.5 1.8 - - - -
717C LEU* 4.1 23.6 - - + -
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Residues in contact with GLU 70 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
66B LYS* 2.9 34.1 + - + +
67B GLY* 3.8 9.8 - - - +
69B PHE* 1.3 84.0 - - + +
71B GLU* 1.3 63.4 + - + +
73B SER* 3.4 6.8 + - - -
74B ALA* 3.0 25.3 + - - +
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Residues in contact with GLU 71 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
67B GLY* 2.9 21.4 + - - +
68B ARG* 2.8 47.9 + - - +
70B GLU* 1.3 77.6 - - + +
72B LEU* 1.3 57.3 + - - +
74B ALA* 3.4 5.2 + - - +
75B TRP* 3.0 28.8 + - - +
714D PHE 5.3 0.2 - - - -
715D GLY* 4.0 7.1 - - - -
718D THR* 4.1 19.7 + - + +
719D MET* 5.8 2.4 - - - +
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Residues in contact with LEU 72 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
72A LEU* 3.8 16.8 - - + -
68B ARG* 2.8 23.4 + - + +
69B PHE* 3.8 1.1 - - - +
71B GLU* 1.3 69.8 - - + +
73B SER* 1.3 61.6 + - - +
75B TRP* 4.0 18.2 - - + -
76B THR* 2.8 38.6 + - + +
714C PHE* 3.5 25.1 - - + -
717C LEU* 3.7 15.5 - - + -
714D PHE* 3.5 39.9 - - + +
717D LEU* 4.5 5.8 - - + -
718D THR* 3.7 20.9 - - + -
----------------------------------------------------------
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Residues in contact with SER 73 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
69B PHE* 2.8 29.4 + - - -
70B GLU* 3.4 9.6 - - - -
72B LEU* 1.3 76.0 - - - +
74B ALA* 1.3 62.1 + - - +
76B THR* 2.8 17.2 + - - -
77B GLU* 3.1 13.0 + - - +
717C LEU* 3.6 22.0 - - - +
----------------------------------------------------------
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Residues in contact with ALA 74 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
70B GLU 3.0 17.6 + - - +
71B GLU* 3.6 5.8 - - - +
73B SER* 1.3 75.3 - - - +
75B TRP* 1.3 58.1 + - - +
77B GLU* 3.4 6.8 + - - +
78B LYS* 2.9 28.6 + - - +
----------------------------------------------------------
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Residues in contact with TRP 75 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
72A LEU* 4.2 11.4 - - + -
75A TRP* 4.8 3.1 - + - -
76A THR* 3.3 46.2 - - + -
71B GLU 3.0 18.1 + - - +
72B LEU* 3.7 22.7 - - + +
74B ALA* 1.3 75.8 - - - +
76B THR* 1.3 88.8 + - + +
78B LYS* 3.4 14.6 + - + +
79B GLN* 2.9 50.7 + - - +
717D LEU* 3.7 33.5 + - + -
718D THR* 3.8 33.6 - - + +
719D MET 5.8 1.0 - - - -
----------------------------------------------------------
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Residues in contact with THR 76 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
72A LEU* 4.2 16.6 - - + -
75A TRP* 3.5 27.0 - - + -
72B LEU 2.8 23.7 + - - +
73B SER* 2.8 24.4 + - - -
75B TRP* 1.3 89.2 - - + +
77B GLU* 1.3 57.8 + - - +
79B GLN* 3.1 4.0 + - - +
80B LYS* 2.9 35.2 + - - +
717C LEU* 4.2 26.4 + - + +
----------------------------------------------------------
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Residues in contact with GLU 77 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
73B SER 3.1 14.4 + - - +
74B ALA* 3.5 7.4 - - - +
76B THR* 1.3 78.6 + - - +
78B LYS* 1.3 66.2 + - - +
80B LYS* 3.0 26.6 + - - +
81B GLU* 3.0 48.2 + - - +
----------------------------------------------------------
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Residues in contact with LYS 78 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
74B ALA 2.9 17.2 + - - +
75B TRP* 3.6 13.5 + - + +
76B THR 3.3 0.2 - - - -
77B GLU* 1.3 76.5 - - - +
79B GLN* 1.3 78.0 + - - +
81B GLU* 3.3 15.7 + - - +
82B GLU* 3.0 62.8 + - + +
----------------------------------------------------------
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Residues in contact with GLN 79 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
75A TRP* 3.7 16.6 - - + -
76A THR* 3.6 24.0 + - - +
79A GLN* 4.0 21.8 - - + +
80A LYS* 4.5 21.1 - - + +
83A ARG* 5.8 1.0 - - - +
75B TRP* 2.9 48.9 + - - +
76B THR 3.1 8.5 + - - +
78B LYS* 1.3 86.4 + - - +
80B LYS* 1.3 62.2 + - - +
82B GLU* 3.6 11.8 + - - +
83B ARG* 3.2 23.7 + - - +
----------------------------------------------------------
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Residues in contact with LYS 80 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
75A TRP* 3.8 29.4 - - + -
79A GLN* 4.9 5.4 - - - +
76B THR* 2.9 19.5 + - - +
77B GLU* 3.0 28.4 + - - +
79B GLN* 1.3 72.6 - - - +
81B GLU* 1.3 60.9 + - - +
83B ARG* 3.2 7.5 + - - +
84B GLN* 2.9 33.5 + - + +
717C LEU 3.4 22.5 + - - -
718C THR 3.7 7.7 + - - -
719C MET 3.7 17.2 + - - -
720C ASP* 4.2 13.0 - - + +
----------------------------------------------------------
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Residues in contact with GLU 81 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
77B GLU* 3.0 42.5 + - - +
78B LYS* 3.6 16.0 - - - +
80B LYS* 1.3 73.8 - - - +
82B GLU* 1.3 59.9 + - + +
84B GLN* 3.1 10.8 + - - +
85B PHE* 2.9 29.2 + - - +
----------------------------------------------------------
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Residues in contact with GLU 82 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
83A ARG* 3.0 36.2 + - - +
78B LYS* 3.0 59.3 + - + +
79B GLN* 3.9 12.8 + - - +
81B GLU* 1.3 77.8 - - + +
83B ARG* 1.3 60.4 + - - +
85B PHE* 3.5 6.8 + - - +
86B PHE* 3.0 33.7 + - + -
----------------------------------------------------------
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Residues in contact with ARG 83 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
79A GLN* 3.2 28.0 - - + +
82A GLU* 2.8 32.9 + - - +
83A ARG* 4.7 21.3 - - + +
86A PHE* 3.6 31.9 - - + -
79B GLN 3.2 13.9 + - - +
80B LYS* 3.5 9.4 - - - +
82B GLU* 1.3 73.2 - - - +
84B GLN* 1.3 60.0 + - - +
85B PHE 3.2 0.2 + - - -
86B PHE* 3.2 3.2 + - - +
87B GLU* 2.6 69.2 + - - +
----------------------------------------------------------
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Residues in contact with GLN 84 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
80B LYS* 2.9 15.3 + - + +
81B GLU* 3.2 14.4 - - - +
83B ARG* 1.3 79.7 - - - +
85B PHE* 1.3 56.4 + - - +
87B GLU* 3.7 19.4 + - - +
88B ILE* 3.0 60.0 + - + +
----------------------------------------------------------
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Residues in contact with PHE 85 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
81B GLU 2.9 12.1 + - - +
82B GLU* 3.6 10.8 - - - +
83B ARG 3.1 0.4 - - - -
84B GLN* 1.3 76.9 - - - +
86B PHE* 1.3 92.3 + + - +
88B ILE* 3.2 7.0 + - - +
89B GLN* 2.9 58.4 + - + +
----------------------------------------------------------
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Residues in contact with PHE 86 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
83A ARG* 3.3 51.4 - - + +
86A PHE* 3.5 20.5 - - + +
87A GLU* 3.6 40.8 - - + +
82B GLU* 3.0 23.3 + - + -
83B ARG* 3.2 5.6 + - - +
85B PHE* 1.3 102.3 - + - +
87B GLU* 1.3 58.1 + - - +
89B GLN* 3.7 20.2 - - - +
90B SER* 2.9 30.3 + - - -
----------------------------------------------------------
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Residues in contact with GLU 87 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
86A PHE* 3.7 34.7 - - + -
83B ARG* 2.6 54.2 + - - +
84B GLN* 3.7 20.6 + - - +
86B PHE* 1.3 75.2 - - - +
88B ILE* 1.3 58.3 + - + +
90B SER* 3.5 2.9 - - - -
91B LYS* 3.0 25.9 + - + +
----------------------------------------------------------
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Residues in contact with ILE 88 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
84B GLN* 3.0 48.4 + - - +
85B PHE* 3.8 4.7 - - - +
87B GLU* 1.3 74.7 - - + +
89B GLN* 1.3 66.2 + - - +
91B LYS* 3.1 22.7 + - + +
92B GLU* 2.9 46.4 + - - +
----------------------------------------------------------
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Residues in contact with GLN 89 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
87A GLU* 5.7 0.2 - - - +
90A SER* 3.3 19.5 + - - +
94A LYS* 3.4 28.0 + - - +
85B PHE* 2.9 48.1 + - + +
86B PHE* 3.7 20.4 - - - +
88B ILE* 1.3 76.7 - - - +
90B SER* 1.3 58.3 + - - +
92B GLU* 3.4 7.5 + - - +
93B ALA* 2.9 30.5 + - - +
----------------------------------------------------------
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Residues in contact with SER 90 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
86A PHE* 3.7 26.6 - - - -
89A GLN* 3.7 22.5 + - - +
90A SER* 3.6 13.1 + - - +
93A ALA* 5.2 0.2 - - - +
86B PHE 2.9 18.9 + - - -
87B GLU 3.5 5.4 - - - -
89B GLN* 1.3 77.6 - - - +
91B LYS* 1.3 62.0 + - - +
93B ALA* 3.3 2.6 + - - +
94B LYS* 3.0 35.9 + - - +
----------------------------------------------------------
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Residues in contact with LYS 91 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
87B GLU* 3.0 15.5 + - + +
88B ILE* 3.1 27.3 + - + +
90B SER* 1.3 75.5 - - - +
92B GLU* 1.3 76.0 + - - +
94B LYS* 3.2 10.6 + - - +
95B GLU* 2.9 57.5 + - + +
----------------------------------------------------------
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Residues in contact with GLU 92 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
88B ILE* 2.9 35.7 + - - +
89B GLN* 3.9 5.7 - - - +
91B LYS* 1.3 86.0 + - - +
93B ALA* 1.3 59.0 + - - +
95B GLU* 3.2 18.6 + - - +
96B ARG* 2.9 32.8 + - - +
----------------------------------------------------------
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Residues in contact with ALA 93 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
90A SER* 4.0 16.2 - - - +
93A ALA* 3.6 25.3 - - + +
94A LYS* 4.4 14.8 - - + -
97A LEU* 5.4 2.1 - - - +
89B GLN 2.9 18.1 + - - +
90B SER* 3.3 4.9 + - - +
92B GLU* 1.3 75.6 - - - +
94B LYS* 1.3 57.1 + - - +
96B ARG* 3.7 8.7 - - - +
97B LEU* 3.0 27.5 + - - +
----------------------------------------------------------
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Residues in contact with LYS 94 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
89A GLN* 3.0 35.0 + - - +
93A ALA* 4.5 12.1 - - + -
96A ARG* 6.2 0.2 - - - +
90B SER* 3.0 33.5 + - - +
91B LYS* 3.6 7.0 - - - +
93B ALA* 1.3 75.3 - - - +
95B GLU* 1.3 65.8 + - + +
97B LEU* 3.1 9.3 + - + +
98B MET* 2.9 29.5 + - + +
----------------------------------------------------------
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Residues in contact with GLU 95 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
91B LYS* 2.9 49.5 + - + +
92B GLU* 3.6 20.5 - - - +
94B LYS* 1.3 74.4 - - - +
96B ARG* 1.3 58.3 + - - +
98B MET* 3.2 8.1 + - - +
99B ALA* 2.9 31.0 + - - +
----------------------------------------------------------
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Residues in contact with ARG 96 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
97A LEU* 3.6 28.0 - - + -
92B GLU 2.9 18.4 + - - +
93B ALA* 3.7 7.0 - - - +
95B GLU* 1.3 75.5 - - - +
97B LEU* 1.3 64.8 + - - +
99B ALA* 4.1 4.4 - - - +
100B LEU* 3.0 53.4 + - + +
----------------------------------------------------------
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Residues in contact with LEU 97 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
93A ALA* 3.7 24.0 - - + +
96A ARG* 3.3 49.8 - - + +
97A LEU* 3.7 36.1 - - + +
100A LEU* 5.1 5.8 - - + -
93B ALA 3.0 12.9 + - - +
94B LYS* 3.3 13.0 - - + +
96B ARG* 1.3 77.1 - - - +
98B MET* 1.3 61.3 + - + +
100B LEU* 4.6 0.2 - - - +
101B SER* 3.0 34.7 + - - -
----------------------------------------------------------
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Residues in contact with MET 98 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
96A ARG* 6.0 4.5 - - - +
94B LYS* 2.9 17.6 + - + +
95B GLU* 3.6 10.1 - - - +
97B LEU* 1.3 79.7 - - + +
99B ALA* 1.3 62.8 + - - +
101B SER* 3.0 21.3 + - - +
102B HIS* 3.3 44.4 + - + +
----------------------------------------------------------
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Residues in contact with ALA 99 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
95B GLU 2.9 20.6 + - - +
96B ARG* 4.1 4.9 - - - +
98B MET* 1.3 73.9 - - - +
100B LEU* 1.3 72.3 + - + +
102B HIS* 4.1 14.3 + - - +
----------------------------------------------------------
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Residues in contact with LEU 100 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
97A LEU* 4.2 21.8 - - + +
100A LEU* 5.9 2.0 - - - +
96B ARG* 3.0 52.7 + - + +
97B LEU 4.1 0.7 - - - -
99B ALA* 1.3 90.2 - - + +
101B SER* 1.3 60.7 + - - +
102B HIS 4.3 3.2 - - - +
----------------------------------------------------------
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Residues in contact with SER 101 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
100A LEU* 5.7 9.6 - - - -
97B LEU* 3.0 25.3 + - - -
98B MET* 3.0 15.2 + - - +
100B LEU* 1.3 78.1 - - - +
102B HIS* 1.3 77.0 + - - +
----------------------------------------------------------
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Residues in contact with HIS 102 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
98B MET* 3.3 39.5 + - + +
99B ALA* 4.1 12.9 - - - +
100B LEU 4.3 2.9 - - - +
101B SER* 1.3 97.5 + - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il