Contacts of the helix formed by residues 679 - 715 (chain C) in PDB entry 5EOA
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with SER 679 (chain C).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
37B PRO* 6.3 0.4 - - - +
678C PRO* 1.3 75.1 - - - +
680C SER* 1.3 59.2 + - - +
681C ASN* 3.8 6.5 + - - +
682C THR* 3.0 31.5 + - - -
683C LEU* 2.8 34.4 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with SER 680 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
34A THR* 6.1 0.7 - - - -
679C SER* 1.3 74.9 - - - +
681C ASN* 1.3 66.3 + - - +
683C LEU* 3.1 5.9 + - - +
684C VAL* 2.9 35.5 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ASN 681 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
41B LEU* 4.9 2.9 - - - +
679C SER* 3.5 6.0 + - - +
680C SER* 1.3 78.1 + - - +
682C THR* 1.3 66.8 + - - +
684C VAL* 3.4 7.0 + - - +
685C GLU* 3.0 35.4 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with THR 682 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
37B PRO* 4.1 28.3 - - + +
40B LEU* 5.2 9.2 - - + -
41B LEU* 3.7 33.4 - - + +
678C PRO* 5.5 2.7 - - + -
679C SER* 3.0 27.9 + - - +
680C SER 3.2 0.8 - - - -
681C ASN* 1.3 80.9 + - - +
683C LEU* 1.3 55.5 + - + +
685C GLU 3.4 0.9 + - - -
686C MET* 2.7 39.5 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with LEU 683 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
34A THR* 3.8 15.3 - - + -
35A PHE 3.8 13.5 - - - +
36A THR* 4.8 0.7 - - - -
37A PRO* 4.0 21.3 - - + -
40A LEU* 3.6 25.8 - - + -
678C PRO* 4.4 22.9 - - + +
679C SER 2.8 30.2 + - - +
680C SER* 3.6 5.4 - - - +
682C THR* 1.3 72.3 - - + +
684C VAL* 1.3 55.2 + - - +
686C MET* 3.5 4.0 - - + +
687C THR* 2.6 42.3 + - - -
686D MET* 5.2 2.2 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with VAL 684 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
34A THR* 3.4 26.0 - - + +
680C SER* 2.9 29.9 + - - +
681C ASN* 3.6 7.0 - - - +
683C LEU* 1.3 75.0 - - - +
685C GLU* 1.3 59.8 + - - +
687C THR* 3.1 5.0 + - - -
688C LEU* 2.8 34.9 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with GLU 685 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
41B LEU* 3.4 37.7 - - + +
44B MET* 4.9 4.3 - - + +
45B LYS* 3.1 34.1 + - - +
681C ASN* 3.0 24.6 + - - +
682C THR 3.8 2.7 - - - +
684C VAL* 1.3 79.3 - - + +
686C MET* 1.3 57.5 + - - +
688C LEU* 3.4 12.8 + - + +
689C GLY* 3.0 25.3 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with MET 686 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
40A LEU* 3.6 29.9 - - + +
44A MET* 4.2 11.7 - - + -
40B LEU* 3.6 39.0 - - + +
41B LEU* 3.6 22.7 - - - -
44B MET* 3.4 36.7 - - + +
682C THR* 2.7 23.1 + - + +
683C LEU* 3.5 8.1 - - + +
685C GLU* 1.3 71.4 - - - +
687C THR* 1.3 59.8 + - - +
689C GLY* 3.5 1.0 + - - -
690C MET* 3.0 29.3 + - - +
686D MET* 5.3 0.9 - - + -
690D MET* 4.0 13.9 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with THR 687 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
33A ASP 3.6 17.7 - - - +
34A THR* 3.8 3.8 - - - +
35A PHE* 2.8 53.4 + - + +
40A LEU* 4.0 8.5 - - - +
683C LEU 2.6 26.6 + - - -
684C VAL* 3.5 5.6 - - - -
686C MET* 1.3 72.3 - - - +
688C LEU* 1.3 57.8 + - - +
690C MET* 3.3 0.9 + - - +
691C LYS* 3.0 45.1 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with LEU 688 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
684C VAL* 2.8 21.6 + - + +
685C GLU* 3.7 12.6 - - + +
687C THR* 1.3 75.7 - - - +
689C GLY* 1.3 65.4 + - - +
691C LYS* 3.6 7.7 + - + +
692C LYS* 3.1 23.2 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with GLY 689 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
44B MET* 3.6 25.6 - - - +
48B LEU* 3.8 17.1 - - - +
685C GLU 3.0 15.6 + - - -
686C MET 3.9 0.4 - - - -
688C LEU* 1.3 77.0 - - - +
690C MET* 1.3 57.6 + - - +
692C LYS* 3.1 4.5 + - - +
693C LEU* 2.9 30.5 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with MET 690 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
35A PHE* 4.3 4.9 - - + -
40A LEU* 3.9 16.8 - - + +
43A GLN* 3.5 27.4 - - + -
44A MET* 3.2 56.5 - - + +
47A LEU* 3.5 23.4 - - + +
44B MET* 3.7 22.1 - - - +
686C MET* 3.0 17.9 + - - +
687C THR 3.6 4.7 - - - +
689C GLY* 1.3 76.1 - - - +
691C LYS* 1.3 58.3 + - - +
693C LEU* 3.3 5.3 + - - +
694C LYS* 2.9 30.1 + - + +
690D MET* 5.5 0.9 - - - +
693D LEU* 4.8 2.9 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with LYS 691 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
33A ASP* 3.7 34.1 + - - +
35A PHE* 3.8 27.2 - - + -
687C THR* 3.0 35.2 + - + +
688C LEU* 4.0 7.0 - - + +
690C MET* 1.3 75.8 - - - +
692C LYS* 1.3 57.5 + - - +
694C LYS* 3.4 7.2 + - - +
695C GLU* 3.0 31.6 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with LYS 692 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
48B LEU* 3.5 26.2 - - + +
55B LYS* 5.7 0.2 - - - +
688C LEU 3.1 13.6 + - - +
689C GLY* 3.1 10.6 + - - +
691C LYS* 1.3 73.4 - - - +
693C LEU* 1.3 57.0 + - - +
695C GLU* 3.2 19.7 + - - +
696C GLU* 2.7 60.3 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with LEU 693 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
47A LEU* 3.7 24.5 - - + -
44B MET* 3.7 30.1 - - + -
47B LEU* 3.6 31.6 - - + +
48B LEU* 3.6 37.5 - - + -
51B ASN* 3.9 17.2 + - + +
689C GLY 2.9 10.0 + - - +
690C MET* 3.6 6.1 - - - +
692C LYS* 1.3 76.2 - - - +
694C LYS* 1.3 57.6 + - - +
696C GLU* 3.4 4.2 + - + +
697C MET* 2.9 34.7 + - + +
690D MET* 6.0 0.2 - - - -
693D LEU* 5.0 3.4 - - + -
697D MET* 5.8 3.1 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with LYS 694 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
35A PHE* 6.2 1.0 - - - -
43A GLN* 3.6 28.3 + - + +
46A GLU* 4.7 10.4 + - + +
47A LEU* 3.9 22.8 - - + +
50A LYS* 5.1 5.9 - - + +
690C MET 2.9 17.3 + - - +
691C LYS* 3.5 9.2 - - - +
692C LYS 3.2 0.2 - - - -
693C LEU* 1.3 77.7 - - - +
695C GLU* 1.3 56.3 + - - +
697C MET* 3.3 3.8 + - - +
698C GLU* 3.1 54.4 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with GLU 695 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
691C LYS 3.0 19.1 + - - +
692C LYS* 3.5 22.1 - - - +
694C LYS* 1.3 74.0 - - - +
696C GLU* 1.3 68.7 + - - +
698C GLU* 3.1 28.9 + - - +
699C GLY* 3.3 8.5 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with GLU 696 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
48B LEU* 4.8 2.7 - - - +
51B ASN* 3.1 39.3 - - + +
52B HIS* 3.0 37.9 + - - +
55B LYS* 3.3 30.6 + - + +
692C LYS* 2.7 51.2 + - - +
693C LEU* 3.7 3.4 - - + +
695C GLU* 1.3 76.6 - - - +
697C MET* 1.3 60.9 + - - +
699C GLY* 3.2 4.6 + - - -
700C VAL* 3.1 24.4 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with MET 697 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
47A LEU* 4.1 11.7 - - + -
50A LYS* 3.9 35.4 - - + -
51A ASN* 3.7 41.1 - - - +
54A LEU* 4.1 16.2 - - + -
51B ASN* 3.8 21.3 - - - +
54B LEU* 5.1 1.6 - - - -
693C LEU* 2.9 20.9 + - + +
694C LYS 3.6 6.1 - - - +
695C GLU 3.2 0.2 - - - -
696C GLU* 1.3 75.8 - - - +
698C GLU* 1.3 64.4 + - - +
700C VAL* 3.1 14.7 + - + +
701C VAL* 2.9 35.3 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with GLU 698 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
50A LYS* 4.5 12.8 - - - +
694C LYS* 3.1 45.9 + - + +
695C GLU* 3.1 22.1 + - - +
697C MET* 1.3 75.3 - - - +
699C GLY* 1.3 58.2 + - - +
701C VAL* 3.1 24.5 - - - +
702C LYS* 3.2 19.2 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with GLY 699 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
55B LYS* 4.9 11.7 - - - -
695C GLU 3.3 5.3 + - - -
696C GLU 3.2 6.9 + - - -
697C MET 3.1 0.4 - - - -
698C GLU* 1.3 76.9 - - - +
700C VAL* 1.3 65.7 + - - +
702C LYS* 3.1 11.7 - - - +
703C GLU* 3.1 27.6 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with VAL 700 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
54A LEU* 3.6 35.2 - - + -
51B ASN* 4.3 8.7 - - - +
54B LEU* 4.0 19.5 - - + +
55B LYS* 4.1 28.0 - - + +
58B MET* 4.0 10.8 - - - +
696C GLU 3.1 16.0 + - - +
697C MET* 3.1 13.6 + - + +
699C GLY* 1.3 75.6 - - - +
701C VAL* 1.3 60.2 + - - +
703C GLU* 3.1 11.0 + - - +
704C LEU* 2.9 24.3 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with VAL 701 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
50A LYS* 4.0 26.5 - - + +
54A LEU* 4.6 12.3 - - + -
697C MET* 2.9 31.0 + - + +
698C GLU* 3.1 23.1 - - - +
700C VAL* 1.3 72.6 - - - +
702C LYS* 1.3 64.1 + - + +
704C LEU* 3.1 13.3 + - + +
705C ALA* 2.8 28.6 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with LYS 702 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
698C GLU* 3.2 17.2 + - - +
699C GLY* 3.1 16.5 - - - +
701C VAL* 1.3 84.4 - - + +
703C GLU* 1.3 64.6 + - + +
705C ALA* 3.1 17.9 + - + +
706C GLU* 3.1 12.5 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with GLU 703 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
55B LYS* 4.7 4.9 - - + +
58B MET* 3.6 25.1 - - + -
59B LYS* 3.1 45.8 - - + +
62B ASN* 2.8 47.0 + - - +
699C GLY 3.1 14.6 + - - +
700C VAL* 3.1 9.7 + - - +
702C LYS* 1.3 74.6 - - - +
704C LEU* 1.3 67.4 + - - +
706C GLU* 3.1 4.5 + - - +
707C ASN* 2.9 13.5 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with LEU 704 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
54A LEU* 3.7 26.2 - - + -
57A ALA* 3.9 24.0 - - + -
58A MET* 4.2 20.4 - - + -
61A ASN* 3.7 22.9 - - - +
58B MET* 3.8 7.6 - - + +
700C VAL 2.9 12.9 + - - +
701C VAL* 3.3 14.6 - - + +
703C GLU* 1.3 76.1 - - - +
705C ALA* 1.3 58.0 + - - +
707C ASN* 3.3 6.3 - - + +
708C ASN* 2.9 46.0 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ALA 705 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
701C VAL 2.8 12.3 + - - +
702C LYS* 3.1 13.2 + - - +
704C LEU* 1.3 78.5 - - - +
706C GLU* 1.3 55.5 + - - +
708C ASN* 3.4 12.8 + - - +
709C HIS* 3.0 26.2 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with GLU 706 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
62B ASN* 3.8 12.3 - - + +
66B LYS* 3.7 29.4 + - - +
702C LYS 3.1 11.2 + - - +
703C GLU* 3.1 9.6 + - - +
705C ALA* 1.3 74.3 - - - +
707C ASN* 1.3 67.3 + - - +
709C HIS* 2.9 35.1 + - - +
710C ILE* 3.0 30.0 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with ASN 707 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
61A ASN* 3.5 20.3 + - - +
65A MET* 6.1 0.3 - - - +
58B MET* 4.9 4.3 - - + -
61B ASN* 2.7 29.3 + - - -
62B ASN* 2.8 20.5 + - - +
65B MET* 3.2 35.4 - - - +
703C GLU 2.9 9.0 + - - +
704C LEU* 3.3 17.9 - - + +
706C GLU* 1.3 75.5 - - - +
708C ASN* 1.3 62.6 + - - +
710C ILE* 4.8 1.3 - - - -
711C LEU* 2.9 22.5 + - - +
707D ASN* 4.3 13.7 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ASN 708 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
57A ALA* 4.9 3.0 - - - +
61A ASN* 2.7 38.5 + - - +
704C LEU* 2.9 41.3 + - - +
705C ALA* 3.5 11.7 - - - +
707C ASN* 1.3 73.2 - - - +
709C HIS* 1.3 63.7 + - - +
711C LEU* 3.4 7.7 + - - +
712C GLU* 3.1 25.1 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with HIS 709 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
705C ALA 3.0 12.8 + - - +
706C GLU* 2.9 33.7 + - - +
708C ASN* 1.3 78.0 - - - +
710C ILE* 1.3 70.0 + - + +
712C GLU* 3.3 18.2 - - - +
713C ARG* 3.4 48.9 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with ILE 710 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
62B ASN* 4.3 2.5 - - - +
65B MET* 3.8 34.1 - - + +
66B LYS* 4.1 28.5 - - + +
69B PHE* 4.1 13.0 - - + -
706C GLU* 3.0 36.7 + - + +
707C ASN* 3.8 5.6 - - - +
709C HIS* 1.3 80.6 - - + +
711C LEU* 1.3 65.5 + - - +
713C ARG* 2.9 20.6 + - + +
714C PHE* 3.1 36.9 + - + -
----------------------------------------------------------
Back to top of page
Residues in contact with LEU 711 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
61A ASN* 3.5 36.3 - - + +
64A ALA* 3.7 27.1 - - + -
65A MET* 3.8 27.8 - - + -
68A ARG* 4.0 23.2 + - + +
65B MET* 3.6 8.3 - - + +
707C ASN* 2.9 18.3 + - - +
708C ASN* 3.6 7.0 - - - +
709C HIS 3.4 0.2 - - - -
710C ILE* 1.3 76.3 - - - +
712C GLU* 1.3 62.5 + - - +
714C PHE* 3.2 19.8 + - + +
715C GLY 3.7 2.3 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with GLU 712 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
708C ASN 3.1 12.7 + - - +
709C HIS* 3.3 13.9 - - - +
711C LEU* 1.3 76.1 - - - +
713C ARG* 1.3 63.6 + - + +
715C GLY* 3.3 14.6 + - - -
716C SER* 4.2 3.1 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with ARG 713 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
69B PHE* 3.6 34.5 - - + -
709C HIS* 3.4 45.7 + - + +
710C ILE* 2.9 14.8 + - - +
712C GLU* 1.3 77.2 - - + +
714C PHE* 1.3 62.9 + - - +
716C SER* 2.8 30.8 + - - -
717C LEU 3.9 1.7 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with PHE 714 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
65A MET* 4.5 5.4 - - + -
68A ARG* 3.9 21.7 - - + -
72A LEU* 4.7 5.8 - - + +
65B MET* 4.3 21.8 - - - -
68B ARG* 4.5 5.8 - - + -
69B PHE* 3.9 25.6 - + + -
72B LEU* 3.5 31.9 - - + -
710C ILE* 3.1 48.2 + - + -
711C LEU* 3.2 15.2 + - + +
713C ARG* 1.3 74.1 - - - +
715C GLY* 1.3 59.5 + - - +
716C SER 2.8 6.6 + - - -
717C LEU* 3.0 27.7 + - + +
718C THR* 4.8 0.9 + - - +
711D LEU* 4.9 0.4 - - + -
714D PHE* 3.6 31.4 - + - -
----------------------------------------------------------
Back to top of page
Residues in contact with GLY 715 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
68A ARG* 3.8 19.6 - - - +
71A GLU* 5.4 2.1 - - - +
711C LEU 3.7 2.4 + - - -
712C GLU 3.3 11.3 + - - -
713C ARG 3.1 1.6 - - - -
714C PHE* 1.3 77.8 - - - +
716C SER* 1.3 58.5 + - - +
717C LEU 3.5 0.6 + - - -
718C THR* 4.4 5.9 + - - -
719C MET* 4.0 15.1 - - - +
----------------------------------------------------------
Back to top of page
A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il