Contacts of the helix formed by residues 24 - 74 (chain E) in PDB entry 5FWP
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ASP 24 (chain E).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
23E ILE* 1.3 72.7 - - - +
25E THR* 1.3 58.4 + - - +
26E ALA* 2.9 32.2 + - - +
27E SER* 3.2 18.3 + - - -
28E LEU* 3.3 5.9 + - - +
147K LEU* 5.4 7.3 - - + +
155K LYS* 4.7 15.3 - - + -
156K LEU 2.8 23.4 + - - +
157K ALA* 3.8 16.7 - - + +
159K PHE* 4.2 0.5 - - - -
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Residues in contact with THR 25 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
19E THR* 3.8 35.6 - - + +
20E HIS 4.8 0.7 - - - +
23E ILE* 3.4 11.8 + - + +
24E ASP* 1.3 68.9 + - - +
26E ALA* 1.3 65.4 + - - +
27E SER 3.0 2.5 - - - -
28E LEU* 3.5 25.4 - - + -
29E PHE* 3.1 51.6 + - + +
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Residues in contact with ALA 26 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
445B SER* 2.8 38.9 + - - -
448B ARG* 6.1 0.2 - - - +
24E ASP* 2.9 21.3 + - - +
25E THR* 1.3 81.2 + - - +
27E SER* 1.4 57.3 + - - +
29E PHE* 5.4 0.7 - - - -
30E ARG* 3.1 18.5 + - - +
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Residues in contact with SER 27 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
24E ASP* 3.2 11.0 + - - -
26E ALA* 1.4 78.4 - - - +
28E LEU* 1.3 60.0 + - - +
29E PHE 3.3 2.0 - - - -
30E ARG* 3.1 30.5 + - - +
31E TRP* 2.9 26.0 + - - +
157K ALA* 3.4 9.5 - - - +
158K ASP* 3.1 35.0 + - - -
159K PHE* 3.5 7.1 + - - -
163K ARG* 5.3 2.4 - - - +
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Residues in contact with LEU 28 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
23E ILE* 4.0 9.2 - - + -
24E ASP 3.3 4.9 + - - +
25E THR* 3.3 26.0 + - + -
27E SER* 1.3 81.8 + - - +
29E PHE* 1.3 58.0 + - + +
31E TRP* 3.0 4.7 + - + +
32E ARG* 2.9 52.7 + - + +
130K PHE* 3.8 28.0 - - + -
131K LEU* 4.2 3.6 - - + -
134K ASN* 5.9 0.4 - - - -
136K ILE* 3.6 36.1 - - + -
159K PHE* 3.8 24.0 - - + -
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Residues in contact with PHE 29 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
445B SER* 5.6 2.7 - - - +
446B THR* 4.9 12.8 - - + -
13E SEP 3.1 24.5 - - - +
14E ASP* 3.6 30.7 - - + -
15E ASP 3.6 16.4 - - - -
16E GLU* 3.7 15.7 - - + -
18E GLU 4.8 0.9 - - - -
19E THR* 4.4 2.0 - - + -
25E THR* 3.1 47.4 + - + +
26E ALA* 5.2 1.1 - - - +
28E LEU* 1.3 79.7 - - + +
30E ARG* 1.3 58.4 + - + +
32E ARG* 3.3 32.8 + - - +
33E HIS* 3.0 25.3 + - - +
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Residues in contact with ARG 30 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
445B SER* 4.0 18.3 + - - -
446B THR* 3.9 20.4 - - + +
449B ARG* 5.7 5.6 - - - +
26E ALA 3.1 20.0 + - - +
27E SER* 3.1 32.1 + - - +
28E LEU 3.1 0.6 - - - -
29E PHE* 1.3 73.9 - - - +
31E TRP* 1.3 66.5 + - - +
33E HIS* 3.2 9.3 + - - +
34E GLN 3.0 18.2 + - - -
158K ASP* 4.7 6.7 + - - -
163K ARG* 2.8 57.8 + - - +
164K ILE* 5.3 0.8 - - - +
166K SER* 5.9 3.0 + - - -
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Residues in contact with TRP 31 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
27E SER 2.9 13.1 + - - +
28E LEU* 3.2 14.4 - - + +
30E ARG* 1.3 77.2 - - - +
32E ARG* 1.3 70.9 + - + +
34E GLN* 3.2 5.3 + - + +
35E ALA* 2.9 50.9 + - + -
134K ASN 4.1 6.1 - - - -
135K CYS* 3.1 29.4 - - + -
136K ILE* 3.3 25.4 - - + -
137K VAL* 3.2 36.5 + - + +
159K PHE* 3.2 38.4 - - + -
162K ALA* 6.2 2.5 - - + -
163K ARG* 4.0 14.3 - - + +
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Residues in contact with ARG 32 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
11E GLU* 5.0 2.6 - - - +
12E VAL 4.2 3.5 + - - -
13E SEP 3.1 30.5 + - - +
15E ASP* 3.5 22.0 + - - +
18E GLU* 2.7 37.2 + - - +
28E LEU* 2.9 38.7 + - + +
29E PHE* 3.4 33.3 - - - +
31E TRP* 1.3 90.7 - - + +
33E HIS* 1.3 65.3 + - - +
35E ALA* 3.4 1.7 + - - +
36E ARG* 2.9 25.6 + - - +
130K PHE* 4.2 3.0 - - - -
134K ASN* 4.1 19.3 + - - +
136K ILE* 5.3 2.8 - - + +
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Residues in contact with HIS 33 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
13E SEP 2.8 40.3 + - - +
29E PHE 3.0 13.1 + - - +
30E ARG* 3.2 12.3 + - - +
32E ARG* 1.3 77.2 - - - +
34E GLN* 1.3 65.5 + - - +
36E ARG* 3.2 13.3 + - - +
37E VAL* 3.0 49.9 + - + +
163K ARG* 4.3 18.8 - - - -
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Residues in contact with GLN 34 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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30E ARG 3.0 5.8 + - - +
31E TRP* 3.5 10.3 - - + +
33E HIS* 1.3 80.0 - - - +
35E ALA* 1.3 58.4 + - - +
37E VAL* 3.2 11.0 + - - +
38E GLU* 2.9 68.9 + - - +
162K ALA* 4.0 23.2 + - + +
163K ARG* 3.2 46.6 + - + -
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Residues in contact with ALA 35 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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31E TRP* 2.9 51.3 + - + +
32E ARG* 3.7 3.4 - - - +
34E GLN* 1.3 76.4 - - - +
36E ARG* 1.3 58.3 + - - +
38E GLU* 3.4 10.4 + - - +
39E ARG* 2.9 31.4 + - - +
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Residues in contact with ARG 36 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
11E GLU* 3.6 27.4 - - - +
13E SEP 2.9 39.0 + - - +
32E ARG 2.9 18.1 + - - +
33E HIS* 3.5 17.8 + - - +
35E ALA* 1.3 77.1 - - - +
37E VAL* 1.3 63.3 + - - +
39E ARG* 3.5 26.1 + - - +
40E MET* 3.1 50.7 + - + +
115E ASN* 3.3 32.3 + - - +
116E VAL* 4.2 10.5 - - - +
117E ASP* 2.9 29.9 + - - -
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Residues in contact with VAL 37 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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33E HIS* 3.0 40.4 + - + +
34E GLN* 3.6 14.4 - - - +
36E ARG* 1.3 78.0 - - - +
38E GLU* 1.3 62.9 + - + +
40E MET* 3.1 22.6 + - + +
41E GLU* 2.9 48.4 + - + +
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Residues in contact with GLU 38 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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34E GLN* 2.9 54.2 + - - +
35E ALA* 3.8 7.9 - - - +
37E VAL* 1.3 75.7 - - + +
39E ARG* 1.3 58.2 + - - +
41E GLU* 3.1 17.9 + - - +
42E GLN* 2.9 44.3 + - + +
162K ALA* 4.2 9.5 - - - +
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Residues in contact with ARG 39 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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11E GLU* 2.8 37.5 + - - -
35E ALA 2.9 18.6 + - - +
36E ARG* 3.5 26.4 + - - +
37E VAL 3.2 0.2 - - - -
38E GLU* 1.3 76.9 - - - +
40E MET* 1.3 62.8 + - - +
42E GLN* 3.3 15.3 + - - +
43E PHE* 2.9 30.2 + - + +
112E MET* 5.2 5.8 - - - +
113E PRO* 4.1 22.8 + - - +
115E ASN* 4.4 8.9 - - - +
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Residues in contact with MET 40 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
36E ARG* 3.1 50.2 + - - +
37E VAL* 3.1 23.3 + - + +
39E ARG* 1.3 90.9 - - - +
41E GLU* 1.3 57.6 + - + +
43E PHE* 3.5 10.3 - - + +
44E GLN* 2.9 30.5 + - - +
112E MET* 5.7 11.7 - - + +
115E ASN* 4.9 6.5 - - - +
117E ASP* 4.1 13.2 - - - +
118E THR* 5.5 5.6 - - - -
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Residues in contact with GLU 41 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
37E VAL* 2.9 37.0 + - + +
38E GLU* 3.1 20.3 + - - +
40E MET* 1.3 77.5 - - + +
42E GLN* 1.3 57.4 + - + +
44E GLN* 3.3 5.4 + - - +
45E LYS* 2.9 52.1 + - - +
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Residues in contact with GLN 42 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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38E GLU* 2.9 24.4 + - + +
39E ARG* 3.5 17.1 - - - +
41E GLU* 1.3 75.9 - - + +
43E PHE* 1.3 63.5 + - - +
45E LYS* 3.4 12.6 + - + +
46E GLU* 3.0 26.0 + - - +
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Residues in contact with PHE 43 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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39E ARG* 2.9 19.3 + - + +
40E MET* 3.5 10.5 - - + +
42E GLN* 1.3 77.4 - - - +
44E GLN* 1.3 66.8 + - - +
46E GLU* 3.3 10.3 + - - +
47E LYS* 3.0 32.9 + - + +
105E MET* 3.4 33.3 - - + +
108E LYS* 3.7 28.9 - - + -
109E GLU* 3.4 36.1 - - + -
112E MET* 3.7 28.3 - - + -
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Residues in contact with GLN 44 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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40E MET 2.9 17.9 + - - +
41E GLU* 3.6 6.3 - - - +
43E PHE* 1.3 83.2 - - + +
45E LYS* 1.3 65.9 + - + +
47E LYS* 3.3 16.0 + - - +
48E GLU* 2.9 65.1 + - - +
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Residues in contact with LYS 45 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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41E GLU* 2.9 37.0 + - - +
42E GLN* 3.7 10.6 - - + +
44E GLN* 1.3 76.1 - - + +
46E GLU* 1.3 63.8 + - - +
48E GLU* 3.4 10.0 + - - +
49E GLU* 3.0 33.9 + - + +
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Residues in contact with GLU 46 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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42E GLN 3.0 18.6 + - - +
43E PHE* 3.4 8.3 - - - +
45E LYS* 1.3 75.4 - - - +
47E LYS* 1.3 58.5 + - - +
49E GLU* 3.2 6.6 + - - +
50E LEU* 2.9 44.2 + - + +
105E MET* 3.1 20.5 - - + +
108E LYS* 2.7 33.0 + - - +
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Residues in contact with LYS 47 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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43E PHE* 3.0 26.3 + - + +
44E GLN* 3.7 17.3 - - - +
46E GLU* 1.3 75.8 - - - +
48E GLU* 1.3 58.6 + - + +
50E LEU* 3.3 6.7 + - - +
51E ASP* 2.9 29.6 + - + +
102E LEU* 3.7 15.0 - - + +
105E MET* 3.6 21.3 - - + +
106E ARG* 6.2 3.7 - - - +
109E GLU* 2.8 31.7 + - - +
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Residues in contact with GLU 48 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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44E GLN* 2.9 52.3 + - - +
45E LYS* 3.8 9.4 - - - +
47E LYS* 1.3 76.9 - - + +
49E GLU* 1.3 63.0 + - + +
51E ASP* 3.3 6.6 + - - +
52E ARG* 2.9 29.3 + - - +
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Residues in contact with GLU 49 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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45E LYS* 3.0 24.8 + - + +
46E GLU* 3.7 5.6 - - - +
48E GLU* 1.3 77.7 - - - +
50E LEU* 1.3 61.6 + - + +
52E ARG* 2.6 51.3 + - - +
53E GLY* 2.9 25.5 + - - -
98E TRP* 4.0 7.8 - - + -
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Residues in contact with LEU 50 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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46E GLU* 2.9 31.6 + - + +
47E LYS 3.6 0.2 - - - +
49E GLU* 1.3 75.7 - - + +
51E ASP* 1.3 58.2 + - - +
53E GLY 3.5 0.5 + - - -
54E CYS* 3.0 28.9 + - - +
98E TRP* 3.6 24.6 - - + +
101E LYS* 3.5 44.4 - - + +
102E LEU* 3.6 16.9 - - + +
105E MET* 3.4 38.6 - - + -
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Residues in contact with ASP 51 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
47E LYS* 2.9 19.1 + - + +
48E GLU* 3.6 7.2 - - - +
50E LEU* 1.3 74.5 - - - +
52E ARG* 1.3 65.7 + - - +
54E CYS* 3.3 3.1 + - - +
55E ARG* 2.8 66.4 + - - +
102E LEU* 3.8 22.6 - - + +
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Residues in contact with ARG 52 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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48E GLU 2.9 17.8 + - - +
49E GLU* 2.6 45.0 + - - +
51E ASP* 1.3 77.6 - - - +
53E GLY* 1.3 59.3 + - - +
55E ARG* 3.2 8.8 + - - +
56E GLU* 2.8 81.9 + - + +
59E ARG* 5.0 0.8 + - - +
98E TRP* 5.3 6.9 - - - -
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Residues in contact with GLY 53 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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49E GLU 2.9 15.0 + - - -
52E ARG* 1.3 78.9 - - - +
54E CYS* 1.3 62.5 + - - +
56E GLU* 3.3 13.6 + - - +
57E CYS* 3.0 20.8 + - - -
98E TRP* 3.5 40.0 + - - -
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Residues in contact with CYS 54 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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50E LEU 3.0 17.7 + - - +
51E ASP* 3.5 6.1 - - - +
53E GLY* 1.3 75.3 - - - +
55E ARG* 1.3 60.9 + - + +
57E CYS 3.3 0.5 + - - -
58E LYS* 2.8 32.0 + - - +
95E GLU* 3.7 34.1 - - - +
98E TRP* 3.4 17.8 - - + -
99E GLU* 3.8 25.6 - - - -
102E LEU* 4.1 8.5 - - + -
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Residues in contact with ARG 55 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
51E ASP* 2.8 51.7 + - - +
52E ARG* 3.6 6.7 - - - +
54E CYS* 1.3 75.7 - - + +
56E GLU* 1.3 59.7 + - - +
58E LYS* 3.3 20.1 + - + +
59E ARG* 2.9 53.4 + - - +
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Residues in contact with GLU 56 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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52E ARG* 2.8 63.3 + - + +
53E GLY* 3.6 8.2 - - - +
54E CYS 3.2 0.2 - - - -
55E ARG* 1.3 75.3 - - - +
57E CYS* 1.3 58.6 + - - +
59E ARG* 3.2 26.3 + - - +
60E LYS* 2.9 50.6 + - - +
98E TRP* 6.0 0.3 - - - -
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Residues in contact with CYS 57 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
53E GLY 3.0 11.5 + - - +
54E CYS 3.8 0.2 - - - +
56E GLU* 1.3 75.8 - - - +
58E LYS* 1.3 60.9 + - - +
60E LYS* 3.6 14.8 - - - +
61E VAL* 2.9 32.9 + - - +
91E LEU* 3.6 18.4 - - - +
94E GLU* 3.5 29.2 - - - -
95E GLU* 3.6 15.7 - - - +
98E TRP* 3.3 28.7 - - - -
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Residues in contact with LYS 58 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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54E CYS* 2.8 21.2 + - - +
55E ARG* 3.4 21.9 - - + +
57E CYS* 1.3 77.1 - - - +
59E ARG* 1.3 60.7 + - + +
61E VAL* 3.2 4.6 - - + +
62E ALA* 2.9 32.4 + - + +
92E ARG* 5.7 0.4 - - - +
95E GLU* 3.3 31.3 - - - +
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Residues in contact with ARG 59 (chain E).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
52E ARG* 6.0 0.4 - - - +
55E ARG* 2.9 42.9 + - - +
56E GLU* 3.5 32.6 - - - +
58E LYS* 1.3 77.3 - - + +
60E LYS* 1.3 60.6 + - + +
62E ALA* 3.6 6.2 - - - +
63E GLU* 2.9 39.6 + - + +
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Residues in contact with LYS 60 (chain E).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
56E GLU* 2.9 39.0 + - - +
57E CYS* 3.6 11.8 - - - +
59E ARG* 1.3 77.2 - - + +
61E VAL* 1.3 56.7 + - - +
63E GLU* 3.4 4.5 + - - +
64E CYS* 2.9 33.5 + - - -
91E LEU* 3.8 30.5 - - + +
94E GLU* 5.8 1.0 + - - -
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Residues in contact with VAL 61 (chain E).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
57E CYS 2.9 17.1 + - - +
58E LYS* 3.2 11.4 - - + +
60E LYS* 1.3 73.3 - - - +
62E ALA* 1.3 59.0 - - - +
64E CYS* 3.5 1.5 - - - +
65E GLN* 2.8 58.8 + - - +
88E ALA* 3.1 35.4 - - + +
91E LEU* 3.7 15.4 - - + +
92E ARG* 4.0 15.7 - - + +
95E GLU* 3.6 19.3 - - - +
----------------------------------------------------------
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Residues in contact with ALA 62 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
58E LYS* 2.9 22.2 + - + +
59E ARG* 3.6 8.3 - - - +
61E VAL* 1.3 77.8 - - + +
63E GLU* 1.3 62.6 + - + +
65E GLN* 3.3 16.4 + - - +
66E ARG* 3.0 25.5 + - - +
----------------------------------------------------------
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Residues in contact with GLU 63 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
59E ARG* 2.9 24.1 + - + +
60E LYS* 3.8 4.9 - - - +
62E ALA* 1.3 76.7 - - + +
64E CYS* 1.3 61.6 + - - +
66E ARG* 2.7 51.2 + - - +
67E LYS* 2.9 37.2 + - - +
----------------------------------------------------------
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Residues in contact with CYS 64 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
60E LYS* 2.9 26.9 + - - +
61E VAL* 3.2 6.0 + - - +
63E GLU* 1.3 78.1 - - - +
65E GLN* 1.3 50.6 + - - +
67E LYS* 3.0 16.9 + - - +
68E LEU* 2.6 38.9 + - - +
84E LEU* 3.5 24.6 - - + +
87E GLU* 5.5 0.4 - - - -
88E ALA* 3.9 18.6 - - + -
91E LEU* 3.3 22.2 - - - -
----------------------------------------------------------
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Residues in contact with GLN 65 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
61E VAL* 2.8 43.6 + - + +
62E ALA* 3.5 14.2 - - - +
64E CYS* 1.3 73.8 - - - +
66E ARG* 1.3 64.8 + - - +
68E LEU* 3.1 20.9 + - + +
69E LYS* 3.0 32.9 + - - +
88E ALA* 5.1 0.7 - - + -
92E ARG* 5.5 6.7 - - - +
----------------------------------------------------------
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Residues in contact with ARG 66 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
62E ALA 3.0 14.1 + - - +
63E GLU* 2.7 41.8 + - - +
65E GLN* 1.3 75.5 - - - +
67E LYS* 1.3 85.6 + - - +
69E LYS* 3.2 15.5 + - + +
70E GLU* 2.8 65.8 + - + +
----------------------------------------------------------
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Residues in contact with LYS 67 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
63E GLU* 2.9 21.2 + - - +
64E CYS* 3.0 17.9 + - - +
66E ARG* 1.3 100.2 - - - +
68E LEU* 1.3 54.1 + - - +
70E GLU* 3.1 14.0 + - - +
71E LEU* 2.7 41.8 + - + +
84E LEU* 3.5 21.1 - - + -
----------------------------------------------------------
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Residues in contact with LEU 68 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
64E CYS 2.6 18.9 + - - +
65E GLN* 3.1 25.3 + - + +
67E LYS* 1.3 71.4 - - - +
69E LYS* 1.3 58.9 - - + +
71E LEU* 4.4 0.4 - - - -
72E GLU* 2.9 28.7 + - - +
81E LEU* 3.0 22.1 - - + +
84E LEU* 3.5 17.7 - - + -
85E GLN* 3.4 48.7 - - + +
88E ALA* 4.0 17.9 - - + -
----------------------------------------------------------
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Residues in contact with LYS 69 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
65E GLN* 3.0 22.8 + - - +
66E ARG* 3.4 13.2 - - + +
68E LEU* 1.3 77.4 - - + +
70E GLU* 1.3 57.1 + - + +
72E GLU* 3.4 13.0 + - - +
73E VAL* 3.1 35.2 + - + +
----------------------------------------------------------
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Residues in contact with GLU 70 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
66E ARG* 2.8 51.6 + - + +
67E LYS* 3.1 15.6 + - - +
69E LYS* 1.3 78.9 - - + +
71E LEU* 1.3 57.3 + - + +
73E VAL* 3.3 8.3 + - - +
74E ALA* 2.8 27.9 + - - +
----------------------------------------------------------
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Residues in contact with LEU 71 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
67E LYS* 2.7 20.6 + - + +
68E LEU* 3.8 3.6 - - - +
70E GLU* 1.3 71.8 - - + +
72E GLU* 1.3 65.5 + - - +
74E ALA* 3.3 15.5 + - + +
77E GLY* 3.2 42.6 - - - +
78E LYS 3.4 0.7 + - - -
80E GLU* 3.8 18.6 - - + +
81E LEU* 3.7 26.2 - - + +
83E ARG* 5.1 3.4 - - - +
84E LEU* 3.6 32.5 - - + -
----------------------------------------------------------
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Residues in contact with GLU 72 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
68E LEU 2.9 18.1 + - - +
69E LYS* 3.5 13.3 - - - +
71E LEU* 1.3 78.0 - - - +
73E VAL* 1.3 63.4 - - + +
74E ALA 3.7 2.9 - - - +
78E LYS* 3.3 36.1 + - - +
81E LEU* 3.9 21.7 - - + +
----------------------------------------------------------
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Residues in contact with VAL 73 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
69E LYS* 3.1 17.4 + - + +
70E GLU* 3.5 9.6 - - - +
72E GLU* 1.3 77.6 - - + +
74E ALA* 1.3 65.7 + - - +
75E GLU* 3.4 8.0 + - - +
----------------------------------------------------------
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Residues in contact with ALA 74 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
70E GLU 2.8 20.4 + - - +
71E LEU* 3.3 19.5 + - + +
72E GLU 3.7 4.3 - - - +
73E VAL* 1.3 76.7 - - - +
75E GLU* 1.3 53.7 + - - +
76E GLY 2.8 15.6 + - - -
77E GLY* 3.0 20.0 + - - +
78E LYS* 4.2 3.1 + - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il