Contacts of the helix formed by residues 33 - 64 (chain A) in PDB entry 5HZZ


Residue contacts within the protein are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332). A short description of the analytical approach is given at the end of the page.
For CSU analysis of other PDB entry

Note:
Non-standard 3 letter residue codes indicate a heterogroup. To identify and analyse, use LPC software

Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB   - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC   - hydrophobic-hydrophilic contact (destabilizing contact)
+/-  - indicates presence/absence of a specific contacts
*    - indicates residues forming contacts  by their side chain
       (including CA atoms)
Residues in contact with PRO 33 (chain A).
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     31A  PRO      4.4     2.0    -      -       -      +
     32A  PRO*     1.3    92.1    -      -       +      +
     34A  PRO*     1.3    74.7    -      -       +      +
     35A  GLU*     3.5    25.8    -      -       +      +
     36A  LEU*     3.1    36.8    +      -       +      +
     37A  LEU*     3.5     4.4    +      -       -      +
     62C  GLN*     4.9     0.2    -      -       -      +
----------------------------------------------------------
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Residues in contact with PRO 34 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     33A  PRO*     1.3    87.3    -      -       +      +
     35A  GLU*     1.3    69.8    +      -       -      +
     37A  LEU*     3.2     4.8    +      -       +      +
     38A  ARG*     3.0    50.8    +      -       -      +
     59C  LEU*     3.9     8.2    -      -       +      +
     62C  GLN*     3.0    34.3    -      -       +      +
----------------------------------------------------------
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Residues in contact with GLU 35 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     33A  PRO*     3.5    22.4    -      -       +      +
     34A  PRO*     1.3    88.8    -      -       -      +
     36A  LEU*     1.3    60.5    +      -       +      +
     38A  ARG*     3.5    19.3    +      -       -      +
     39A  LEU*     3.0    29.6    +      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 36 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     32A  PRO*     3.8    21.5    -      -       +      -
     33A  PRO*     3.1    27.4    +      -       +      +
     35A  GLU*     1.3    80.1    -      -       +      +
     37A  LEU*     1.3    59.0    +      -       -      +
     39A  LEU*     3.2    12.6    +      -       +      +
     40A  ARG*     2.9    43.9    +      -       +      +
     93A  GLN*     3.1    51.6    -      -       +      +
     94A  LEU*     5.4     3.1    -      -       +      -
----------------------------------------------------------
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Residues in contact with LEU 37 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     32A  PRO*     3.6    31.2    -      -       +      -
     33A  PRO      3.5     2.8    +      -       -      +
     34A  PRO      3.2     7.0    +      -       -      +
     36A  LEU*     1.3    78.9    -      -       -      +
     38A  ARG*     1.3    56.4    +      -       -      +
     40A  ARG*     3.8     6.4    -      -       +      +
     41A  GLN*     2.9    30.4    +      -       -      +
     94A  LEU*     4.7     4.5    -      -       +      -
     55C  ILE*     4.2    22.1    -      -       +      +
     58C  LEU*     4.0    26.0    -      -       +      -
     59C  LEU*     3.7    25.8    -      -       +      -
     62C  GLN*     4.0    13.5    -      -       -      +
     68C  LEU*     5.9     0.2    -      -       +      -
     76C  LEU*     4.0    27.4    -      -       +      -
----------------------------------------------------------
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Residues in contact with ARG 38 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     34A  PRO*     3.0    43.9    +      -       -      +
     35A  GLU*     3.5    30.5    +      -       -      +
     37A  LEU*     1.3    75.7    -      -       -      +
     39A  LEU*     1.3    61.3    +      -       -      +
     41A  GLN*     3.4     6.7    +      -       -      +
     42A  THR*     2.9    29.0    +      -       -      -
     59C  LEU*     4.3    22.7    -      -       +      +
----------------------------------------------------------
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Residues in contact with LEU 39 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     35A  GLU      3.0    19.0    +      -       -      +
     36A  LEU*     3.6    14.8    -      -       +      +
     38A  ARG*     1.3    74.0    -      -       -      +
     40A  ARG*     1.3    70.1    +      -       -      +
     42A  THR*     3.1    10.5    +      -       +      -
     43A  LEU*     3.0    42.1    +      -       +      +
     93A  GLN*     5.5     1.6    -      -       -      +
----------------------------------------------------------
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Residues in contact with ARG 40 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     18A  HIS*     4.2     8.3    +      -       -      -
     36A  LEU*     2.9    31.5    +      -       +      +
     37A  LEU*     3.9     7.6    -      -       +      +
     39A  LEU*     1.3    79.9    -      -       -      +
     41A  GLN*     1.3    57.2    +      -       -      +
     43A  LEU*     3.3    29.1    +      -       -      +
     44A  LEU*     2.9    35.7    +      -       +      +
     86A  VAL*     3.0    36.4    +      -       -      +
     89A  GLY*     3.4    21.6    -      -       -      -
     90A  ALA*     3.7    28.1    -      -       +      +
     93A  GLN*     3.2    35.2    +      -       +      +
     94A  LEU*     6.4     2.2    -      -       +      -
     55C  ILE*     5.5     3.8    -      -       +      -
----------------------------------------------------------
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Residues in contact with GLN 41 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     37A  LEU      2.9    18.6    +      -       -      +
     38A  ARG*     3.6     7.9    -      -       -      +
     40A  ARG*     1.3    77.7    -      -       -      +
     42A  THR*     1.3    57.7    +      -       -      +
     44A  LEU*     3.3    12.7    +      -       -      +
     45A  ASP*     2.9    62.6    +      -       -      +
     48C  SER*     5.3     1.2    +      -       -      -
     51C  VAL*     5.0     1.0    -      -       -      +
     52C  ARG*     3.3    44.0    -      -       -      +
     55C  ILE*     3.3    32.1    -      -       +      +
     56C  ASP*     4.9     2.0    -      -       -      +
----------------------------------------------------------
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Residues in contact with THR 42 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     38A  ARG      2.9    15.8    +      -       -      -
     39A  LEU*     3.1    13.7    +      -       +      -
     41A  GLN*     1.3    78.1    -      -       -      +
     43A  LEU*     1.3    62.8    +      -       +      +
     45A  ASP*     3.3     7.9    +      -       +      +
     46A  GLU*     3.0    44.7    +      -       +      +
----------------------------------------------------------
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Residues in contact with LEU 43 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     39A  LEU*     3.0    32.6    +      -       +      +
     40A  ARG*     3.5    45.3    -      -       -      +
     42A  THR*     1.3    78.1    -      -       +      +
     44A  LEU*     1.3    61.9    +      -       -      +
     46A  GLU*     3.5     8.6    +      -       -      +
     47A  ALA*     3.1    24.9    +      -       -      +
     86A  VAL*     3.9    27.1    -      -       +      +
----------------------------------------------------------
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Residues in contact with LEU 44 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     40A  ARG*     2.9    22.5    +      -       +      +
     41A  GLN*     3.6    13.7    -      -       -      +
     43A  LEU*     1.3    75.9    -      -       -      +
     45A  ASP*     1.3    57.8    +      -       -      +
     47A  ALA*     3.4     1.6    +      -       -      +
     48A  SER*     2.8    37.6    +      -       -      +
     83A  LEU*     4.2     2.6    -      -       +      +
     86A  VAL*     4.0    15.5    -      -       +      +
     87A  THR*     3.5    38.4    -      -       +      +
     90A  ALA*     5.1     4.7    -      -       +      -
     51C  VAL*     3.7    30.5    -      -       +      -
     55C  ILE*     4.5     7.0    -      -       +      -
     80C  LEU*     4.0    10.8    -      -       +      -
     83C  LEU*     3.9    14.6    -      -       +      -
----------------------------------------------------------
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Residues in contact with ASP 45 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     41A  GLN*     2.9    42.9    +      -       -      +
     42A  THR*     3.3     8.2    +      -       +      +
     44A  LEU*     1.3    78.0    -      -       -      +
     46A  GLU*     1.3    60.8    +      -       +      +
     48A  SER*     3.8     4.9    -      -       -      -
     49A  ALA*     2.9    29.5    +      -       -      +
     52A  ARG*     5.1     1.0    +      -       -      -
     48C  SER*     4.6     2.3    +      -       -      -
     52C  ARG*     2.5    35.7    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLU 46 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     42A  THR*     3.0    38.0    +      -       +      +
     43A  LEU*     4.1     7.8    -      -       -      +
     45A  ASP*     1.3    76.9    -      -       +      +
     47A  ALA*     1.3    62.9    +      -       -      +
     49A  ALA*     3.3     7.2    +      -       -      +
     50A  GLU*     3.1    29.0    +      -       +      +
----------------------------------------------------------
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Residues in contact with ALA 47 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     43A  LEU      3.1    17.3    +      -       -      +
     46A  GLU*     1.3    78.1    -      -       -      +
     48A  SER*     1.3    60.8    +      -       -      +
     50A  GLU*     3.3     9.5    +      -       -      +
     51A  VAL*     3.2    26.0    +      -       -      +
     79A  GLU*     4.8     1.1    -      -       -      +
     82A  ASP*     4.5     7.2    -      -       +      +
     83A  LEU*     3.8    24.0    -      -       +      +
     86A  VAL*     3.7    22.2    -      -       +      -
----------------------------------------------------------
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Residues in contact with SER 48 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     44A  LEU*     2.8    24.7    +      -       -      +
     45A  ASP*     3.8     6.1    -      -       -      -
     47A  ALA*     1.3    77.0    -      -       -      +
     49A  ALA*     1.3    56.8    +      -       -      +
     51A  VAL*     3.3     3.8    +      -       -      +
     52A  ARG*     2.8    46.9    +      -       -      +
     83A  LEU*     3.8    22.7    -      -       -      +
     44C  LEU      6.0     0.2    -      -       -      -
     48C  SER*     4.1    21.5    +      -       -      -
     52C  ARG*     6.1     0.2    -      -       -      -
     83C  LEU*     5.1     3.6    -      -       -      +
----------------------------------------------------------
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Residues in contact with ALA 49 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     45A  ASP      2.9    18.3    +      -       -      +
     46A  GLU*     3.6     8.1    -      -       -      +
     47A  ALA      3.3     0.2    -      -       -      -
     48A  SER*     1.3    78.1    -      -       -      +
     50A  GLU*     1.3    56.2    +      -       +      +
     52A  ARG*     3.6    19.2    -      -       -      +
     53A  ALA*     2.9    31.6    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLU 50 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     46A  GLU*     3.1    19.6    +      -       +      +
     47A  ALA*     3.7     9.0    -      -       -      +
     49A  ALA*     1.3    77.7    -      -       +      +
     51A  VAL*     1.3    62.0    +      -       -      +
     53A  ALA*     3.8     5.4    -      -       -      +
     54A  GLU*     3.0    24.1    +      -       -      +
     79A  GLU*     3.7    27.7    -      -       +      +
    201A   MN      3.5    19.4    +      -       -      +
----------------------------------------------------------
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Residues in contact with VAL 51 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     47A  ALA      3.2    10.8    +      -       -      +
     48A  SER*     3.7     8.1    -      -       -      +
     50A  GLU*     1.3    74.4    -      -       -      +
     52A  ARG*     1.3    66.9    +      -       -      +
     54A  GLU*     3.1     5.1    +      -       -      +
     55A  ILE*     2.9    33.3    +      -       +      +
     76A  LEU*     4.1     4.9    -      -       +      -
     79A  GLU*     3.4    39.9    -      -       +      +
     80A  LEU*     3.8    18.4    -      -       +      +
     83A  LEU*     4.3     9.6    -      -       +      -
     41C  GLN*     5.1     0.4    -      -       -      +
     44C  LEU*     3.7    31.4    -      -       +      -
----------------------------------------------------------
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Residues in contact with ARG 52 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     45A  ASP      5.1     0.6    +      -       -      -
     48A  SER*     2.8    30.8    +      -       -      +
     49A  ALA*     3.6    32.2    -      -       -      +
     51A  VAL*     1.3    78.2    -      -       -      +
     53A  ALA*     1.3    62.7    +      -       -      +
     55A  ILE      3.3     0.2    +      -       -      -
     56A  ASP*     3.0    31.2    +      -       -      +
     41C  GLN*     3.3    34.0    +      -       -      +
     44C  LEU      5.3     0.6    +      -       -      -
     45C  ASP*     2.8    38.8    +      -       -      +
     48C  SER*     4.7     8.3    +      -       -      -
     52C  ARG*     6.1     0.4    -      -       -      +
----------------------------------------------------------
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Residues in contact with ALA 53 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     49A  ALA      2.9    17.9    +      -       -      +
     50A  GLU*     3.8     6.5    -      -       -      +
     52A  ARG*     1.3    78.1    -      -       -      +
     54A  GLU*     1.3    59.0    +      -       -      +
     56A  ASP*     3.5     7.5    +      -       -      +
     57A  HIS*     2.9    28.2    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLU 54 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     50A  GLU      3.0    18.0    +      -       -      +
     51A  VAL*     3.1     4.5    +      -       -      +
     53A  ALA*     1.3    74.8    -      -       -      +
     55A  ILE*     1.3    60.3    +      -       -      +
     57A  HIS*     3.2    30.8    +      -       -      +
     58A  LEU*     2.9    39.7    +      -       -      +
     61A  ARG*     5.3     0.5    +      -       -      -
     72A  ASP      4.6     1.6    -      -       -      +
     75A  PRO*     3.8    26.5    -      -       -      +
     76A  LEU*     3.6    37.4    +      -       +      +
     79A  GLU*     4.9     5.8    -      -       +      +
----------------------------------------------------------
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Residues in contact with ILE 55 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     51A  VAL*     2.9    32.9    +      -       +      +
     54A  GLU*     1.3    75.3    -      -       -      +
     56A  ASP*     1.3    63.4    +      -       -      +
     58A  LEU*     3.1     8.2    +      -       -      +
     59A  LEU*     2.9    35.2    +      -       +      +
     76A  LEU*     3.7    23.6    -      -       +      -
     80A  LEU*     5.8     0.7    -      -       +      -
     37C  LEU*     3.8    29.6    -      -       +      +
     40C  ARG*     4.6     5.8    -      -       +      -
     41C  GLN*     3.5    46.2    -      -       +      +
     44C  LEU*     4.2     9.4    -      -       +      -
     90C  ALA*     6.1     0.9    -      -       +      -
----------------------------------------------------------
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Residues in contact with ASP 56 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     52A  ARG*     3.0    30.3    +      -       -      +
     53A  ALA*     3.7     6.8    -      -       -      +
     55A  ILE*     1.3    76.0    -      -       -      +
     57A  HIS*     1.3    56.2    +      -       -      +
     59A  LEU*     3.4    13.8    +      -       -      +
     60A  ALA*     3.0    30.1    +      -       -      +
     41C  GLN*     3.0    18.8    +      -       -      -
----------------------------------------------------------
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Residues in contact with HIS 57 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     53A  ALA      2.9    19.1    +      -       -      +
     54A  GLU*     3.3    34.7    +      -       -      +
     56A  ASP*     1.3    77.2    -      -       -      +
     58A  LEU*     1.3    63.3    +      -       +      +
     60A  ALA*     3.3     7.0    +      -       -      +
     61A  ARG*     3.2    61.7    +      -       +      +
----------------------------------------------------------
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Residues in contact with LEU 58 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     54A  GLU*     2.9    35.1    +      -       -      +
     55A  ILE*     3.1     3.8    +      -       -      +
     57A  HIS*     1.3    74.0    -      -       +      +
     59A  LEU*     1.3    65.8    +      -       -      +
     61A  ARG*     3.2    24.1    +      -       -      +
     62A  GLN*     3.0    28.1    +      -       -      +
     68A  LEU*     4.1    18.8    -      -       +      +
     72A  ASP      3.9    16.6    -      -       -      +
     73A  LEU*     4.2    15.5    -      -       +      -
     76A  LEU*     3.8    37.9    -      -       +      -
     37C  LEU*     3.9    19.3    -      -       +      -
----------------------------------------------------------
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Residues in contact with LEU 59 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     55A  ILE*     2.9    35.4    +      -       +      +
     56A  ASP*     3.7    15.0    -      -       -      +
     58A  LEU*     1.3    75.6    -      -       -      +
     60A  ALA*     1.3    57.2    +      -       -      +
     62A  GLN*     3.2    22.6    +      -       -      +
     63A  ALA*     2.9    28.6    +      -       -      +
     34C  PRO*     3.7    31.6    -      -       +      +
     37C  LEU*     3.8    10.1    -      -       +      -
     38C  ARG*     4.0    27.8    -      -       +      +
     41C  GLN*     5.3     1.8    -      -       +      +
----------------------------------------------------------
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Residues in contact with ALA 60 (chain A). Click here for Legend to table.
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                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     56A  ASP      3.0    17.2    +      -       -      +
     57A  HIS*     3.7     6.7    -      -       -      +
     58A  LEU      3.2     0.4    -      -       -      -
     59A  LEU*     1.3    76.0    -      -       -      +
     61A  ARG*     1.3    64.2    +      -       +      +
     63A  ALA*     3.3     8.7    +      -       -      +
     64A  ALA*     3.1    21.7    +      -       -      +
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Residues in contact with ARG 61 (chain A). Click here for Legend to table.
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                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     54A  GLU*     5.3     0.4    +      -       -      -
     57A  HIS*     3.2    52.6    +      -       +      +
     58A  LEU*     3.6    17.9    -      -       -      +
     60A  ALA*     1.3    76.4    -      -       +      +
     62A  GLN*     1.3    62.7    +      -       -      +
     64A  ALA*     3.2    13.6    +      -       -      +
     65A  GLY      3.3     0.5    +      -       -      -
     66A  GLU*     2.8    68.6    +      -       -      +
     68A  LEU*     4.0    13.9    -      -       +      +
     72A  ASP*     3.1    33.1    +      -       -      +
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Residues in contact with GLN 62 (chain A). Click here for Legend to table.
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                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     58A  LEU      3.0    14.1    +      -       -      +
     59A  LEU*     3.2    11.2    +      -       -      +
     61A  ARG*     1.3    76.0    -      -       -      +
     63A  ALA*     1.3    56.6    +      -       -      +
     65A  GLY*     2.8    21.7    +      -       -      -
     66A  GLU      3.7    12.7    -      -       -      +
     68A  LEU*     3.6    32.8    -      -       +      +
     32C  PRO      2.8    28.9    +      -       -      -
     33C  PRO*     4.0     0.4    -      -       -      +
     34C  PRO*     3.4    39.5    -      -       +      +
     37C  LEU*     3.5    13.4    -      -       -      +
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Residues in contact with ALA 63 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     59A  LEU      2.9    16.6    +      -       -      +
     60A  ALA*     3.7     9.2    -      -       -      +
     61A  ARG      3.3     0.4    -      -       -      -
     62A  GLN*     1.3    75.4    -      -       -      +
     64A  ALA*     1.3    59.1    +      -       -      +
     65A  GLY*     3.2     1.3    +      -       -      -
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Residues in contact with ALA 64 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     60A  ALA      3.1    12.6    +      -       -      +
     61A  ARG*     3.5    13.0    -      -       -      +
     62A  GLN      3.1     0.4    -      -       -      -
     63A  ALA*     1.3    75.2    -      -       -      +
     65A  GLY*     1.3    58.3    +      -       -      +
     66A  GLU*     3.6     2.4    +      -       +      +
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A short description of the analytical approach
The contact analysis used in this page is based upon the approach developed in: Sobolev V., Wade R.C., Vriend G. and Edelman M. PROTEINS (1996) 25, 120-129. Contact legitimacy depends on the hydrophobic-hydrophilic properties of the contacting atoms. In order to define it, for each inter-atomic contact, eight atom classes have been introduced:


   I  Hydrophilic      - N and O that can donate and accept hydrogen bonds
                         (e.g., oxygen of hydroxyl group of Ser. or Thr)
  II  Acceptor         - N or O that can only accept a hydrogen bond
 III  Donor            - N that can only donate a hydrogen bond
  IV  Hydrophobic      - Cl, Br, I and all C atoms that are not in
                         aromatic rings and do not have a covalent bond to
                         a N or O atom
   V  Aromatic         - C in aromatic rings irrespective of any other 
                         bonds formed by the atom
  VI  Neutral          - C atoms that have a covalent bond to at least one
                         atom of class I or two or more atoms from class II
                         or III; atoms; S, F, P, and metal atoms in all cases
 VII  Neutral-donor    - C atoms that have a covalent bond with only one
                         atom of class III
VIII  Neutral-acceptor - C atoms that have a covalent bond with only 
                         one atom of class II
For each pair of contacts the state of legitimacy is shown below:

Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
  Atomic class           I  II  III   IV   V   VI  VII  VIII
------------------------------------------------------------
   I  (Hydrophilic)      +   +    +    -   +   +    +    +
  II  (Acceptor)         +   -    +    -   +   +    +    -
 III  (Donor)            +   +    -    -   +   +    -    +
  IV  (Hydrophobic)      -   -    -    +   +   +    +    +
   V  (Aromatic)         +   +    +    +   +   +    +    +
  VI  (Neutral)          +   +    +    +   +   +    +    +
 VII  (Neutral-donor)    +   +    -    +   +   +    -    +
VIII  (Neutral-acceptor) +   -    +    +   +   +    +    -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically assigned based on the atomic coordinates. However, in three cases (see below) the automatic assignment is currently ambiguous. In these cases, the user is advised to manually analyse the full list of contacts using LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are 
   considered "aromatic" (Class V) if the ring is approximately
   planar, and "hydrophobic" (Class IV) or "neutral" (Classes
   VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
   "hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
   "carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).

Please E-mail any questions and/or suggestions concerning this page to Vladimir.Sobolev@weizmann.ac.il