Contacts of the helix formed by residues 33 - 64 (chain B) in PDB entry 5HZZ


Residue contacts within the protein are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332). A short description of the analytical approach is given at the end of the page.
For CSU analysis of other PDB entry

Note:
Non-standard 3 letter residue codes indicate a heterogroup. To identify and analyse, use LPC software

Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB   - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC   - hydrophobic-hydrophilic contact (destabilizing contact)
+/-  - indicates presence/absence of a specific contacts
*    - indicates residues forming contacts  by their side chain
       (including CA atoms)
Residues in contact with PRO 33 (chain B).
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     31B  PRO      4.5     1.1    -      -       -      +
     32B  PRO*     1.3    91.8    -      -       +      +
     34B  PRO*     1.3    74.4    -      -       +      +
     35B  GLU*     3.3    28.7    -      -       +      +
     36B  LEU*     3.1    31.0    +      -       +      +
     37B  LEU*     3.4     9.4    +      -       -      +
     62D  GLN*     4.4     0.4    -      -       -      +
----------------------------------------------------------
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Residues in contact with PRO 34 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     33B  PRO*     1.3    87.6    -      -       +      +
     35B  GLU*     1.3    70.2    +      -       -      +
     37B  LEU*     3.1     5.2    +      -       +      +
     38B  ARG*     3.0    50.7    +      -       -      +
     59D  LEU*     3.7    18.5    -      -       +      +
     62D  GLN*     3.4    27.4    -      -       +      +
----------------------------------------------------------
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Residues in contact with GLU 35 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     33B  PRO*     3.3    24.6    -      -       +      +
     34B  PRO*     1.3    85.5    -      -       -      +
     36B  LEU*     1.3    59.9    +      -       +      +
     38B  ARG*     3.5    19.6    +      -       -      +
     39B  LEU*     3.0    29.7    +      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 36 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     32B  PRO*     3.7    22.0    -      -       +      -
     33B  PRO*     3.1    27.4    +      -       +      +
     35B  GLU*     1.3    79.3    -      -       +      +
     37B  LEU*     1.3    66.6    +      -       +      +
     39B  LEU*     3.2    11.6    +      -       +      -
     40B  ARG*     2.9    40.6    +      -       +      +
     93B  GLN*     3.1    51.8    -      -       +      +
     94B  LEU*     5.4     2.7    -      -       +      -
----------------------------------------------------------
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Residues in contact with LEU 37 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     32B  PRO*     3.7    30.1    -      -       +      -
     33B  PRO      3.4     2.6    +      -       -      +
     34B  PRO      3.1     6.1    +      -       -      +
     36B  LEU*     1.3    78.7    -      -       +      +
     38B  ARG*     1.3    59.1    +      -       -      +
     40B  ARG*     3.4     5.9    +      -       +      +
     41B  GLN*     2.9    30.0    +      -       -      +
     94B  LEU*     4.6     5.2    -      -       +      -
     55D  ILE*     4.1    23.6    -      -       +      +
     58D  LEU*     4.0    25.6    -      -       +      -
     59D  LEU*     3.7    24.5    -      -       +      -
     62D  GLN*     3.9    14.6    -      -       -      +
     68D  LEU*     5.9     0.2    -      -       +      -
     76D  LEU*     4.0    26.5    -      -       +      -
----------------------------------------------------------
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Residues in contact with ARG 38 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     34B  PRO*     3.0    38.5    +      -       -      +
     35B  GLU*     3.5    33.4    +      -       -      +
     37B  LEU*     1.3    77.0    -      -       -      +
     39B  LEU*     1.3    61.2    +      -       -      +
     41B  GLN*     3.4     7.3    +      -       -      +
     42B  THR*     2.9    28.1    +      -       -      -
     59D  LEU*     4.1    24.1    -      -       +      +
----------------------------------------------------------
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Residues in contact with LEU 39 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     35B  GLU      3.0    18.9    +      -       -      +
     36B  LEU*     3.2    13.2    +      -       +      +
     38B  ARG*     1.3    73.9    -      -       -      +
     40B  ARG*     1.3    68.7    +      -       -      +
     42B  THR*     3.2    10.3    +      -       +      -
     43B  LEU*     3.0    40.1    +      -       +      +
     93B  GLN*     5.9     0.4    -      -       -      +
----------------------------------------------------------
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Residues in contact with ARG 40 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     18B  HIS*     4.5     8.1    +      -       -      -
     36B  LEU*     2.9    35.2    +      -       +      +
     37B  LEU*     4.0     5.6    -      -       +      +
     39B  LEU*     1.3    79.7    -      -       -      +
     41B  GLN*     1.3    62.3    +      -       -      +
     43B  LEU*     3.3    26.3    +      -       -      +
     44B  LEU*     3.0    30.4    +      -       +      +
     86B  VAL*     3.0    41.0    +      -       -      +
     89B  GLY*     3.4    14.6    -      -       -      -
     90B  ALA*     3.4    33.2    -      -       +      +
     93B  GLN*     3.4    29.7    +      -       +      +
     55D  ILE*     5.2     3.8    -      -       +      -
----------------------------------------------------------
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Residues in contact with GLN 41 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     37B  LEU      2.9    18.7    +      -       -      +
     38B  ARG*     3.6     7.9    -      -       -      +
     40B  ARG*     1.3    76.2    -      -       -      +
     42B  THR*     1.3    63.6    +      -       -      +
     44B  LEU*     3.2    13.2    +      -       -      +
     45B  ASP*     2.9    45.9    +      -       -      +
     48D  SER      5.3     1.2    +      -       -      -
     51D  VAL*     5.0     1.4    -      -       -      +
     52D  ARG*     3.3    45.0    -      -       +      +
     55D  ILE*     3.4    30.7    -      -       +      +
     56D  ASP*     5.0     1.2    -      -       -      +
----------------------------------------------------------
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Residues in contact with THR 42 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     38B  ARG*     2.9    15.7    +      -       -      +
     39B  LEU*     3.2    14.8    +      -       +      -
     41B  GLN*     1.3    77.3    -      -       -      +
     43B  LEU*     1.3    64.4    +      -       -      +
     45B  ASP*     3.2     8.3    +      -       +      +
     46B  GLU*     3.0    45.5    +      -       +      +
----------------------------------------------------------
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Residues in contact with LEU 43 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     39B  LEU*     3.0    33.3    +      -       +      +
     40B  ARG*     3.5    44.6    -      -       -      +
     42B  THR*     1.3    75.0    -      -       -      +
     44B  LEU*     1.3    63.5    +      -       -      +
     46B  GLU*     3.5     9.7    +      -       +      +
     47B  ALA*     3.0    25.5    +      -       -      +
     86B  VAL*     3.9    26.2    -      -       +      +
----------------------------------------------------------
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Residues in contact with LEU 44 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     40B  ARG*     3.0    20.5    +      -       +      +
     41B  GLN*     3.2    18.4    +      -       -      +
     43B  LEU*     1.3    76.8    -      -       -      +
     45B  ASP*     1.3    58.4    +      -       -      +
     47B  ALA*     3.3     1.8    +      -       -      +
     48B  SER*     2.8    36.4    +      -       -      +
     83B  LEU*     4.2     3.0    -      -       +      +
     86B  VAL*     3.9    27.4    -      -       +      +
     87B  THR*     3.6    27.8    -      -       +      +
     90B  ALA*     5.2     4.9    -      -       +      -
     51D  VAL*     3.8    29.4    -      -       +      -
     55D  ILE*     4.7     3.8    -      -       +      -
     80D  LEU*     4.0    11.7    -      -       +      -
     83D  LEU*     4.3    13.2    -      -       +      -
----------------------------------------------------------
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Residues in contact with ASP 45 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     41B  GLN*     2.9    38.2    +      -       -      +
     42B  THR*     3.2     8.7    +      -       +      +
     44B  LEU*     1.3    77.0    -      -       -      +
     46B  GLU*     1.3    57.8    +      -       +      +
     48B  SER*     3.3     6.7    +      -       -      -
     49B  ALA*     3.0    29.5    +      -       -      +
     52B  ARG*     5.5     0.2    +      -       -      -
     48D  SER*     5.8     0.9    -      -       -      -
     52D  ARG*     2.6    35.5    +      -       -      -
----------------------------------------------------------
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Residues in contact with GLU 46 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     42B  THR*     3.0    38.6    +      -       +      +
     43B  LEU*     4.1     9.7    -      -       +      +
     45B  ASP*     1.3    77.9    -      -       +      +
     47B  ALA*     1.3    63.5    +      -       -      +
     49B  ALA*     3.4     7.0    +      -       -      +
     50B  GLU*     3.2    28.1    +      -       +      +
----------------------------------------------------------
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Residues in contact with ALA 47 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     43B  LEU      3.0    18.7    +      -       -      +
     46B  GLU*     1.3    77.2    -      -       -      +
     48B  SER*     1.3    61.8    +      -       -      +
     50B  GLU*     3.3     9.3    +      -       -      +
     51B  VAL*     3.1    25.6    +      -       -      +
     79B  GLU      4.7     0.9    -      -       -      +
     82B  ASP*     4.5     7.6    -      -       +      +
     83B  LEU*     3.9    22.9    -      -       +      +
     86B  VAL*     3.8    22.4    -      -       +      -
----------------------------------------------------------
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Residues in contact with SER 48 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     44B  LEU*     2.8    25.4    +      -       -      +
     45B  ASP*     3.7     6.7    -      -       -      -
     47B  ALA*     1.3    78.1    -      -       -      +
     49B  ALA*     1.3    56.8    +      -       -      +
     51B  VAL*     3.4     7.5    +      -       -      +
     52B  ARG*     2.9    42.4    +      -       -      +
     83B  LEU*     3.8    18.3    -      -       -      +
     41D  GLN*     5.3     1.2    +      -       -      -
     44D  LEU*     6.6     0.4    -      -       -      -
     48D  SER*     3.6    23.1    +      -       -      -
     83D  LEU*     5.4     0.3    -      -       -      +
----------------------------------------------------------
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Residues in contact with ALA 49 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     45B  ASP      3.0    17.1    +      -       -      +
     46B  GLU*     3.8     7.4    -      -       -      +
     47B  ALA      3.2     0.2    -      -       -      -
     48B  SER*     1.3    74.4    -      -       -      +
     50B  GLU*     1.3    63.6    +      -       -      +
     52B  ARG*     3.4    17.9    +      -       -      +
     53B  ALA*     2.9    29.5    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLU 50 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     46B  GLU*     3.2    17.3    +      -       +      +
     47B  ALA*     3.3    10.5    +      -       -      +
     49B  ALA*     1.3    75.2    -      -       -      +
     51B  VAL*     1.3    66.2    +      -       -      +
     53B  ALA*     3.4     9.1    +      -       -      +
     54B  GLU*     3.1    29.3    +      -       -      +
     79B  GLU*     3.6    32.0    -      -       -      +
    201B   MN      4.6     6.5    -      -       -      +
----------------------------------------------------------
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Residues in contact with VAL 51 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     47B  ALA      3.1    13.0    +      -       -      +
     48B  SER*     3.7     9.0    -      -       -      +
     49B  ALA      3.3     0.2    -      -       -      -
     50B  GLU*     1.3    73.5    -      -       -      +
     52B  ARG*     1.3    66.1    +      -       -      +
     54B  GLU*     3.0     5.3    +      -       -      +
     55B  ILE*     2.9    32.0    +      -       +      +
     76B  LEU*     4.1     4.9    -      -       +      -
     79B  GLU*     3.3    39.0    -      -       +      +
     80B  LEU*     3.7    18.8    -      -       +      +
     83B  LEU*     4.2    11.4    -      -       +      -
     41D  GLN*     5.2     0.9    -      -       -      +
     44D  LEU*     3.7    29.4    -      -       +      -
----------------------------------------------------------
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Residues in contact with ARG 52 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     45B  ASP      5.5     0.2    +      -       -      -
     48B  SER*     2.9    22.6    +      -       -      +
     49B  ALA*     3.7    26.0    -      -       -      +
     51B  VAL*     1.3    75.3    -      -       -      +
     53B  ALA*     1.3    57.2    +      -       -      +
     55B  ILE*     3.7     0.9    -      -       -      +
     56B  ASP*     2.8    51.1    +      -       -      +
     41D  GLN*     3.3    30.4    -      -       +      +
     45D  ASP*     2.6    32.9    +      -       -      +
     48D  SER*     6.1     2.2    -      -       -      -
----------------------------------------------------------
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Residues in contact with ALA 53 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     49B  ALA      2.9    17.4    +      -       -      +
     50B  GLU*     3.6    12.3    -      -       -      +
     51B  VAL      3.2     0.2    -      -       -      -
     52B  ARG*     1.3    77.5    -      -       -      +
     54B  GLU*     1.3    66.3    +      -       +      +
     56B  ASP*     3.6     7.5    +      -       -      +
     57B  HIS*     3.1    23.9    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLU 54 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     50B  GLU*     3.1    17.2    +      -       -      +
     51B  VAL      3.0     8.0    +      -       -      +
     53B  ALA*     1.3    76.4    -      -       -      +
     55B  ILE*     1.3    67.5    +      -       -      +
     57B  HIS*     3.4    14.4    +      -       -      +
     58B  LEU*     3.1    30.0    +      -       -      +
     75B  PRO*     3.5    31.8    -      -       -      +
     76B  LEU*     3.8    22.1    +      -       +      -
     79B  GLU*     3.7    24.1    -      -       +      +
----------------------------------------------------------
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Residues in contact with ILE 55 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     51B  VAL*     2.9    30.9    +      -       +      +
     54B  GLU*     1.3    76.4    -      -       -      +
     56B  ASP*     1.3    65.1    +      -       -      +
     58B  LEU*     3.1     7.1    +      -       -      +
     59B  LEU*     2.9    37.3    +      -       +      +
     76B  LEU*     3.7    24.2    -      -       +      -
     80B  LEU*     5.8     0.2    -      -       +      -
     37D  LEU*     3.9    27.4    -      -       +      +
     40D  ARG*     4.7     5.4    -      -       +      -
     41D  GLN*     3.4    44.2    -      -       +      +
     44D  LEU*     4.1    12.3    -      -       +      -
----------------------------------------------------------
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Residues in contact with ASP 56 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     52B  ARG*     2.8    42.3    +      -       -      +
     53B  ALA*     3.8     6.6    -      -       -      +
     55B  ILE*     1.3    72.6    -      -       -      +
     57B  HIS*     1.3    58.1    +      -       -      +
     59B  LEU*     3.3    14.1    +      -       -      +
     60B  ALA*     2.9    30.9    +      -       -      +
     41D  GLN*     4.7     5.4    -      -       -      +
----------------------------------------------------------
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Residues in contact with HIS 57 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     53B  ALA      3.1    18.6    +      -       -      +
     54B  GLU*     3.7    15.5    -      -       -      +
     55B  ILE      3.2     0.2    -      -       -      -
     56B  ASP*     1.3    76.6    -      -       -      +
     58B  LEU*     1.3    63.0    +      -       +      +
     60B  ALA*     3.2     7.4    +      -       -      +
     61B  ARG*     2.9    66.5    +      -       +      +
----------------------------------------------------------
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Residues in contact with LEU 58 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     54B  GLU*     3.1    16.4    +      -       +      +
     55B  ILE      3.7     7.4    -      -       -      +
     57B  HIS*     1.3    79.5    -      -       +      +
     59B  LEU*     1.3    62.7    +      -       -      +
     61B  ARG*     3.3    16.8    +      -       -      +
     62B  GLN*     3.0    29.0    +      -       -      +
     68B  LEU*     3.9    26.7    -      -       +      +
     72B  ASP      3.8    21.1    -      -       -      +
     73B  LEU*     3.9    21.8    -      -       +      -
     76B  LEU*     3.7    37.0    -      -       +      -
     37D  LEU*     3.8    17.7    -      -       +      -
----------------------------------------------------------
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Residues in contact with LEU 59 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     55B  ILE*     2.9    34.9    +      -       +      +
     56B  ASP*     3.7    12.1    -      -       -      +
     58B  LEU*     1.3    77.7    -      -       -      +
     60B  ALA*     1.3    57.0    +      -       -      +
     62B  GLN*     3.3     7.3    +      -       -      +
     63B  ALA*     2.8    29.7    +      -       -      +
     34D  PRO*     3.6    44.9    -      -       +      +
     37D  LEU*     3.7    11.9    -      -       +      -
     38D  ARG*     3.9    28.3    -      -       +      +
     41D  GLN*     6.0     0.9    -      -       +      -
----------------------------------------------------------
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Residues in contact with ALA 60 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     56B  ASP      2.9    17.6    +      -       -      +
     57B  HIS*     3.7     9.6    -      -       -      +
     58B  LEU      3.2     0.2    -      -       -      -
     59B  LEU*     1.3    75.2    -      -       -      +
     61B  ARG*     1.3    65.3    +      -       +      +
     63B  ALA*     3.3     8.3    +      -       -      +
     64B  ALA*     3.1    23.0    +      -       -      +
----------------------------------------------------------
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Residues in contact with ARG 61 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     57B  HIS*     2.9    53.1    +      -       +      +
     58B  LEU*     3.8    12.5    -      -       -      +
     60B  ALA*     1.3    75.7    -      -       +      +
     62B  GLN*     1.3    60.3    +      -       -      +
     64B  ALA*     3.3     7.9    +      -       -      +
     65B  GLY      3.5     0.2    +      -       -      -
     66B  GLU*     3.0    60.8    +      -       +      +
     67B  ALA      5.1     3.6    +      -       -      -
     68B  LEU*     4.0    18.0    -      -       +      +
     72B  ASP*     3.2    48.5    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLN 62 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     58B  LEU      3.0    13.3    +      -       -      +
     59B  LEU*     3.6    10.0    -      -       -      +
     61B  ARG*     1.3    74.2    -      -       -      +
     63B  ALA*     1.3    64.9    +      -       -      +
     65B  GLY*     2.9    14.9    +      -       -      -
     66B  GLU      3.8    10.9    -      -       -      +
     68B  LEU*     3.7    28.9    -      -       +      +
     31D  PRO*     6.1     0.2    -      -       -      +
     32D  PRO      2.5    31.9    +      -       -      -
     33D  PRO*     3.9     0.4    -      -       -      +
     34D  PRO*     3.4    42.0    -      -       +      +
     37D  LEU*     3.6    12.6    -      -       -      +
----------------------------------------------------------
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Residues in contact with ALA 63 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     59B  LEU      2.8    21.0    +      -       -      +
     60B  ALA*     3.3    10.5    +      -       -      +
     62B  GLN*     1.3    74.3    -      -       -      +
     64B  ALA*     1.3    59.0    +      -       -      +
     65B  GLY      3.2     0.9    +      -       -      -
----------------------------------------------------------
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Residues in contact with ALA 64 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     60B  ALA      3.1    14.6    +      -       -      +
     61B  ARG*     3.6     7.2    -      -       -      +
     62B  GLN      3.1     1.0    -      -       -      -
     63B  ALA*     1.3    75.8    -      -       -      +
     65B  GLY*     1.3    60.2    +      -       -      +
     66B  GLU*     3.3    17.6    +      -       -      +
----------------------------------------------------------
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A short description of the analytical approach
The contact analysis used in this page is based upon the approach developed in: Sobolev V., Wade R.C., Vriend G. and Edelman M. PROTEINS (1996) 25, 120-129. Contact legitimacy depends on the hydrophobic-hydrophilic properties of the contacting atoms. In order to define it, for each inter-atomic contact, eight atom classes have been introduced:


   I  Hydrophilic      - N and O that can donate and accept hydrogen bonds
                         (e.g., oxygen of hydroxyl group of Ser. or Thr)
  II  Acceptor         - N or O that can only accept a hydrogen bond
 III  Donor            - N that can only donate a hydrogen bond
  IV  Hydrophobic      - Cl, Br, I and all C atoms that are not in
                         aromatic rings and do not have a covalent bond to
                         a N or O atom
   V  Aromatic         - C in aromatic rings irrespective of any other 
                         bonds formed by the atom
  VI  Neutral          - C atoms that have a covalent bond to at least one
                         atom of class I or two or more atoms from class II
                         or III; atoms; S, F, P, and metal atoms in all cases
 VII  Neutral-donor    - C atoms that have a covalent bond with only one
                         atom of class III
VIII  Neutral-acceptor - C atoms that have a covalent bond with only 
                         one atom of class II
For each pair of contacts the state of legitimacy is shown below:

Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
  Atomic class           I  II  III   IV   V   VI  VII  VIII
------------------------------------------------------------
   I  (Hydrophilic)      +   +    +    -   +   +    +    +
  II  (Acceptor)         +   -    +    -   +   +    +    -
 III  (Donor)            +   +    -    -   +   +    -    +
  IV  (Hydrophobic)      -   -    -    +   +   +    +    +
   V  (Aromatic)         +   +    +    +   +   +    +    +
  VI  (Neutral)          +   +    +    +   +   +    +    +
 VII  (Neutral-donor)    +   +    -    +   +   +    -    +
VIII  (Neutral-acceptor) +   -    +    +   +   +    +    -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically assigned based on the atomic coordinates. However, in three cases (see below) the automatic assignment is currently ambiguous. In these cases, the user is advised to manually analyse the full list of contacts using LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are 
   considered "aromatic" (Class V) if the ring is approximately
   planar, and "hydrophobic" (Class IV) or "neutral" (Classes
   VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
   "hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
   "carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).

Please E-mail any questions and/or suggestions concerning this page to Vladimir.Sobolev@weizmann.ac.il