Contacts of the helix formed by residues 33 - 64 (chain C) in PDB entry 5HZZ
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with PRO 33 (chain C).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
62A GLN* 4.0 0.7 - - - +
31C PRO 4.2 3.1 - - - +
32C PRO* 1.3 92.6 - - + +
34C PRO* 1.3 71.5 - - + +
35C GLU* 3.3 20.4 - - + +
36C LEU* 3.1 28.5 + - + +
37C LEU* 3.3 9.0 + - - +
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Residues in contact with PRO 34 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
59A LEU* 3.7 13.0 - - + +
62A GLN* 3.4 37.4 - - + +
33C PRO* 1.3 83.6 - - + +
35C GLU* 1.3 72.7 + - - +
37C LEU* 3.2 3.3 + - + +
38C ARG* 2.9 52.9 + - - +
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Residues in contact with GLU 35 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
120A ASP 4.7 4.5 - - - +
33C PRO* 3.3 21.7 - - + +
34C PRO* 1.3 84.5 - - - +
36C LEU* 1.3 61.2 + - - +
38C ARG* 3.5 22.4 + - - +
39C LEU* 3.1 23.0 + - - +
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Residues in contact with LEU 36 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
24C ALA* 5.4 6.5 - - + -
32C PRO* 3.7 22.0 - - + -
33C PRO* 3.1 26.7 + - + +
35C GLU* 1.3 76.9 - - - +
37C LEU* 1.3 66.6 + - + +
39C LEU* 3.3 7.2 + - + +
40C ARG* 3.0 40.6 + - + +
93C GLN* 3.0 64.4 - - + +
94C LEU* 4.9 3.4 - - + +
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Residues in contact with LEU 37 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
55A ILE* 3.8 21.1 - - + +
58A LEU* 3.9 26.9 - - + -
59A LEU* 3.8 12.6 - - + -
62A GLN* 3.5 25.1 - - - +
68A LEU* 4.6 0.7 - - + -
76A LEU* 4.1 25.1 - - + -
32C PRO* 3.6 33.4 - - + -
33C PRO 3.3 2.2 + - - +
34C PRO 3.2 7.7 + - - +
36C LEU* 1.3 77.9 - - + +
38C ARG* 1.3 63.9 + - - +
40C ARG* 3.3 9.2 + - + +
41C GLN* 3.0 24.1 + - - +
94C LEU* 4.7 4.9 - - + -
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Residues in contact with ARG 38 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
59A LEU* 4.0 23.8 - - + +
120A ASP* 6.3 0.2 - - - -
34C PRO* 2.9 37.5 + - - +
35C GLU* 3.8 32.8 + - - +
37C LEU* 1.3 76.4 - - - +
39C LEU* 1.3 62.9 + - - +
41C GLN* 3.4 6.8 + - - +
42C THR* 3.0 27.5 + - - +
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Residues in contact with LEU 39 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
118A ARG* 4.8 0.2 - - - +
120A ASP* 3.7 50.2 - - + +
121A GLY* 4.0 16.2 - - - +
122A LYS* 3.9 13.0 - - + +
35C GLU 3.1 16.1 + - - +
36C LEU* 3.7 6.1 - - + +
38C ARG* 1.3 77.9 - - - +
40C ARG* 1.3 66.1 + - - +
42C THR* 3.1 4.9 + - - -
43C LEU* 2.9 49.2 + - + +
93C GLN* 4.4 17.3 - - - +
201C UMP 5.0 2.0 - - - +
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Residues in contact with ARG 40 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
55A ILE* 4.7 8.3 - - + -
18C HIS* 3.9 11.7 + - - -
36C LEU* 3.0 33.2 + - + +
37C LEU* 3.3 10.3 + - + +
39C LEU* 1.3 81.7 - - - +
41C GLN* 1.3 63.3 + - - +
43C LEU* 3.4 29.7 + - - +
44C LEU* 3.0 30.3 + - + +
86C VAL* 3.2 32.5 + - - +
89C GLY* 3.4 19.3 - - - -
90C ALA* 3.5 33.3 - - + +
93C GLN* 2.9 33.6 + - - -
94C LEU* 6.2 2.0 - - + -
201C UMP 4.7 7.3 + - - -
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Residues in contact with GLN 41 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
51A VAL* 5.1 1.2 - - - +
52A ARG* 3.3 44.6 + - - +
55A ILE* 3.5 28.6 - - + +
56A ASP* 3.0 30.1 + - - -
59A LEU* 5.3 2.6 - - + +
37C LEU 3.0 16.8 + - - +
38C ARG* 3.5 7.4 - - - +
40C ARG* 1.3 77.2 - - - +
42C THR* 1.3 57.7 + - - +
44C LEU* 3.2 6.0 + - - +
45C ASP* 2.9 48.0 + - - +
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Residues in contact with THR 42 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
118A ARG* 3.6 27.1 - - - +
120A ASP* 4.0 7.4 + - - +
38C ARG* 3.0 16.3 + - - +
39C LEU* 3.1 11.5 + - - -
41C GLN* 1.3 77.0 - - - +
43C LEU* 1.3 59.7 + - + +
45C ASP* 3.4 6.6 + - - +
46C GLU* 2.9 32.4 + - + +
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Residues in contact with LEU 43 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
118A ARG* 4.8 2.7 - - - +
122A LYS* 3.9 37.9 - - + -
39C LEU* 2.9 37.0 + - + +
40C ARG* 3.7 38.4 - - - +
42C THR* 1.3 76.9 - - - +
44C LEU* 1.3 57.0 + - - +
46C GLU* 3.4 10.6 + - - +
47C ALA* 2.9 31.5 + - - +
86C VAL* 3.8 23.0 - - + +
201C UMP 3.9 23.6 - - + +
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Residues in contact with LEU 44 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
48A SER* 6.0 0.3 - - - -
51A VAL* 3.7 28.5 - - + -
52A ARG* 5.5 0.7 - - - -
55A ILE* 4.2 11.4 - - + -
80A LEU* 4.1 11.0 - - + -
83A LEU* 3.8 18.4 - - + -
40C ARG 3.0 22.2 + - - +
41C GLN* 3.2 6.0 + - - +
43C LEU* 1.3 74.8 - - - +
45C ASP* 1.3 67.7 + - - +
47C ALA* 4.1 0.7 - - - +
48C SER* 3.0 26.5 + - - -
83C LEU* 4.2 7.5 - - + +
86C VAL* 4.0 18.8 - - + +
87C THR* 3.5 28.5 - - - +
90C ALA* 4.8 8.3 - - + -
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Residues in contact with ASP 45 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
52A ARG* 2.8 42.8 + - - +
41C GLN* 2.9 38.1 + - - +
42C THR* 3.8 6.1 - - - +
44C LEU* 1.3 78.5 - - - +
46C GLU* 1.3 61.6 + - - +
48C SER* 3.4 1.8 + - - -
49C ALA* 3.0 25.0 + - - +
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Residues in contact with GLU 46 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
118A ARG* 4.8 6.7 + - - -
122A LYS* 2.9 31.9 + - - +
42C THR* 2.9 20.2 + - + +
43C LEU* 3.8 12.7 - - - +
45C ASP* 1.3 77.9 - - - +
47C ALA* 1.3 61.9 + - - +
49C ALA* 3.4 7.0 + - - +
50C GLU* 3.1 33.0 + - + +
201C UMP 3.0 0.6 + - - -
202C MN 2.3 31.0 + - - +
57D HIS* 4.7 9.2 + - - -
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Residues in contact with ALA 47 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
43C LEU 2.9 18.1 + - - +
44C LEU 4.1 0.2 - - - +
46C GLU* 1.3 77.3 - - - +
48C SER* 1.3 62.1 + - - +
50C GLU* 3.2 16.4 + - - +
51C VAL* 3.0 26.7 + - - +
79C GLU 4.7 0.7 - - - +
82C ASP* 4.3 6.1 - - + +
83C LEU* 3.9 24.9 - - + +
86C VAL* 3.9 22.4 - - + -
201C UMP 6.4 0.2 - - - -
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Residues in contact with SER 48 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
41A GLN* 5.3 1.4 + - - -
45A ASP* 4.6 1.6 + - - -
48A SER* 4.1 24.9 + - - -
52A ARG* 4.7 7.0 + - - -
44C LEU 3.0 19.5 + - - -
45C ASP* 3.7 6.1 - - - -
47C ALA* 1.3 77.8 - - - +
49C ALA* 1.3 61.5 + - - +
51C VAL* 3.3 8.3 + - - +
52C ARG* 3.0 44.2 + - - +
83C LEU* 4.2 10.4 - - - +
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Residues in contact with ALA 49 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
45C ASP 3.0 17.5 + - - +
46C GLU* 3.7 7.0 - - - +
47C ALA 3.3 0.2 - - - -
48C SER* 1.3 76.6 - - - +
50C GLU* 1.3 58.7 + - + +
52C ARG* 3.4 20.4 + - - +
53C ALA* 3.0 26.7 + - - +
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Residues in contact with GLU 50 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
46C GLU* 3.1 27.2 + - + +
47C ALA* 3.2 10.0 + - - +
49C ALA* 1.3 73.9 - - + +
51C VAL* 1.3 66.3 + - - +
53C ALA* 3.3 7.4 + - - +
54C GLU* 3.2 26.5 + - - +
79C GLU* 3.2 20.9 - - - +
202C MN 2.2 29.8 + - - -
203C MN 2.0 36.5 + - - -
57D HIS* 5.2 4.5 + - - -
----------------------------------------------------------
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Residues in contact with VAL 51 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
41A GLN* 5.0 2.2 - - - +
44A LEU* 3.7 29.2 - - + -
47C ALA 3.0 15.8 + - - +
48C SER* 3.6 9.4 - - - +
50C GLU* 1.3 75.9 - - - +
52C ARG* 1.3 63.2 + - - +
54C GLU* 3.0 4.7 + - - +
55C ILE* 2.9 34.0 + - + +
76C LEU* 4.0 5.0 - - + +
79C GLU* 3.4 39.5 - - + +
80C LEU* 3.8 18.8 - - + +
83C LEU* 4.3 11.9 - - + -
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Residues in contact with ARG 52 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
41A GLN* 3.3 25.2 - - - +
45A ASP* 2.5 37.6 + - - -
48A SER* 6.1 0.4 - - - -
52A ARG* 6.1 0.8 - - - +
48C SER* 3.0 27.0 + - - +
49C ALA* 3.7 26.6 - - - +
51C VAL* 1.3 76.1 - - - +
53C ALA* 1.3 63.2 + - - +
55C ILE* 3.3 1.2 + - - +
56C ASP* 3.0 43.8 + - - +
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Residues in contact with ALA 53 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
49C ALA 3.0 14.6 + - - +
50C GLU* 3.6 11.2 - - - +
51C VAL 3.2 0.2 - - - -
52C ARG* 1.3 76.4 - - - +
54C GLU* 1.3 63.5 + - - +
56C ASP* 3.4 7.9 + - - +
57C HIS* 3.1 41.9 + - - +
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Residues in contact with GLU 54 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
50C GLU 3.2 12.5 + - - +
51C VAL 3.0 8.3 + - - +
53C ALA* 1.3 76.7 - - - +
55C ILE* 1.3 67.2 + - - +
57C HIS* 3.4 24.7 + - - +
58C LEU* 3.1 27.6 + - + +
75C PRO* 3.3 29.0 - - - +
76C LEU* 3.9 22.4 - - + +
79C GLU* 3.7 23.8 - - + +
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Residues in contact with ILE 55 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
37A LEU* 4.2 28.5 - - + +
38A ARG* 5.6 0.2 - - - -
40A ARG* 5.2 2.9 - - + -
41A GLN* 3.3 50.3 - - + +
44A LEU* 4.5 4.3 - - + -
51C VAL* 2.9 29.9 + - + +
52C ARG 3.8 0.9 - - - +
54C GLU* 1.3 75.9 - - - +
56C ASP* 1.3 63.5 + - - +
58C LEU* 3.2 9.9 + - - +
59C LEU* 3.0 39.5 + - + +
76C LEU* 3.7 22.4 - - + -
80C LEU* 5.9 0.7 - - + -
----------------------------------------------------------
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Residues in contact with ASP 56 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
41A GLN* 4.9 1.4 - - - +
52C ARG* 3.0 36.0 + - - +
53C ALA* 3.6 8.2 - - - +
54C GLU 3.2 0.2 - - - -
55C ILE* 1.3 80.7 - - - +
57C HIS* 1.3 64.2 + - + +
59C LEU* 3.3 15.9 + - - +
60C ALA* 3.0 24.5 + - - +
----------------------------------------------------------
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Residues in contact with HIS 57 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
53C ALA* 3.1 32.3 + - + +
54C GLU* 3.7 31.6 + - - +
55C ILE 3.3 0.2 - - - -
56C ASP* 1.3 75.4 - - + +
58C LEU* 1.3 64.8 + - + +
60C ALA* 3.2 6.8 + - - +
61C ARG* 3.0 36.3 + - - +
50D GLU* 5.5 12.6 - - + -
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Residues in contact with LEU 58 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
32A PRO* 5.7 0.2 - - + -
37A LEU* 4.0 20.4 - - + -
54C GLU 3.1 14.1 + - - +
55C ILE* 3.6 6.3 - - - +
57C HIS* 1.3 77.5 - - + +
59C LEU* 1.3 64.1 + - - +
61C ARG* 3.4 12.8 + - - +
62C GLN* 3.0 27.6 + - - +
68C LEU* 4.3 28.8 - - + +
72C ASP 3.6 24.2 - - - +
73C LEU* 4.0 17.5 - - + -
76C LEU* 3.8 35.9 - - + -
----------------------------------------------------------
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Residues in contact with LEU 59 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
34A PRO* 3.9 24.0 - - + +
37A LEU* 3.7 17.9 - - + -
38A ARG* 4.3 23.6 - - + +
55C ILE* 3.0 35.6 + - + +
56C ASP* 3.3 13.0 + - - +
58C LEU* 1.3 75.8 - - - +
60C ALA* 1.3 57.7 + - - +
62C GLN* 3.3 22.8 - - - +
63C ALA* 2.9 30.7 + - - +
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Residues in contact with ALA 60 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
118B ARG* 5.6 0.2 + - - -
56C ASP 3.0 16.6 + - - +
57C HIS* 3.7 6.5 - - - +
59C LEU* 1.3 75.1 - - - +
61C ARG* 1.3 66.9 + - + +
63C ALA* 3.3 8.2 + - - +
64C ALA* 3.2 22.3 + - - +
----------------------------------------------------------
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Residues in contact with ARG 61 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
118B ARG* 5.4 1.1 - - - +
125B LYS* 6.2 1.8 - - - +
57C HIS* 3.0 25.1 + - + +
58C LEU* 3.9 11.5 - - - +
60C ALA* 1.3 77.6 - - + +
62C GLN* 1.3 62.8 + - - +
64C ALA* 3.1 8.4 + - - -
66C GLU* 2.9 66.2 + - + +
67C ALA 5.1 2.8 + - - -
68C LEU* 3.9 18.1 - - + +
72C ASP* 2.8 44.2 + - - +
----------------------------------------------------------
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Residues in contact with GLN 62 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
32A PRO 3.4 22.8 + - - -
34A PRO* 3.0 44.5 - - + +
37A LEU* 4.0 5.1 - - - +
58C LEU 3.0 17.2 + - - +
59C LEU* 3.3 17.0 - - - +
61C ARG* 1.3 77.6 - - - +
63C ALA* 1.3 66.0 + - - +
65C GLY* 3.1 12.5 + - - -
66C GLU 4.0 12.8 - - - +
68C LEU* 3.7 22.9 - - + +
----------------------------------------------------------
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Residues in contact with ALA 63 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
59C LEU 2.9 19.7 + - - +
60C ALA* 3.4 10.1 - - - +
61C ARG 3.2 0.4 - - - -
62C GLN* 1.3 79.8 - - - +
64C ALA* 1.3 57.9 + - - +
65C GLY 3.3 1.1 + - - -
----------------------------------------------------------
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Residues in contact with ALA 64 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
118B ARG* 3.1 50.4 - - + +
119B ALA* 4.4 9.2 + - - +
120B ASP* 5.5 2.2 - - - +
60C ALA 3.2 12.9 + - - +
61C ARG 3.1 4.6 + - - +
63C ALA* 1.3 75.4 - - - +
65C GLY* 1.3 57.0 + - - +
66C GLU 3.5 2.5 - - - -
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
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