Contacts of the helix formed by residues 11 - 62 (chain A) in PDB entry 5IJ7
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with GLY 11 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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9A GLU 4.2 0.8 + - - -
10A LYS* 1.3 75.5 - - - +
12A PRO* 1.4 76.0 - - - +
13A ILE 3.5 2.0 - - - -
14A CYS* 3.4 10.0 - - - +
15A TRP* 3.1 25.1 + - - -
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Residues in contact with PRO 12 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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11A GLY* 1.4 80.6 - - - +
13A ILE* 1.3 70.8 + - + +
15A TRP* 3.3 7.5 + - + +
16A ARG* 3.0 42.5 + - - +
225A GLU* 4.4 20.0 - - + +
226A ALA* 5.3 0.3 - - - +
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Residues in contact with ILE 13 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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11A GLY 3.5 0.4 - - - -
12A PRO* 1.3 78.6 - - + +
14A CYS* 1.3 63.0 + - - +
16A ARG* 3.3 32.0 + - - +
17A LYS* 3.0 23.7 + - + +
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Residues in contact with CYS 14 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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10A LYS* 3.9 31.4 - - + -
11A GLY* 3.4 17.2 - - - +
13A ILE* 1.3 77.1 - - - +
15A TRP* 1.4 57.2 + - - +
17A LYS* 3.1 24.9 + - - +
18A ARG* 2.9 51.0 + - - +
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Residues in contact with TRP 15 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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10A LYS* 3.2 36.0 + - + +
11A GLY 3.1 18.1 + - - +
12A PRO* 3.3 6.3 + - + +
14A CYS* 1.4 74.1 - - - +
16A ARG* 1.4 53.0 + - - +
18A ARG* 3.1 39.9 + - - +
19A VAL* 2.8 37.2 + - - +
178A LEU* 3.5 47.8 - - + -
193A LEU* 4.7 1.3 - - + -
194A ASP* 3.7 15.9 - - + -
197A ASP* 3.8 9.4 - - - -
222A LYS* 3.5 45.2 - - + +
223A ILE* 3.7 19.3 - - + -
226A ALA* 3.7 18.6 - - + -
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Residues in contact with ARG 16 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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12A PRO* 3.0 29.7 + - - +
13A ILE* 3.3 41.5 - - - +
15A TRP* 1.4 73.1 - - - +
17A LYS* 1.4 61.9 + - - +
19A VAL* 3.4 9.3 + - - +
20A LYS* 3.1 22.9 + - - +
226A ALA* 4.1 8.0 - - - +
229A SER* 3.6 27.3 + - - +
230A MET* 3.1 42.4 - - + +
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Residues in contact with LYS 17 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
13A ILE* 3.0 15.0 + - + +
14A CYS* 3.1 34.7 + - - +
16A ARG* 1.4 76.1 - - - +
18A ARG* 1.3 62.2 + - - +
20A LYS* 3.5 12.7 + - + +
21A SER* 3.0 30.9 + - - -
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Residues in contact with ARG 18 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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10A LYS* 3.7 19.2 - - - +
14A CYS* 2.9 33.4 + - - +
15A TRP* 3.1 39.1 + - - +
17A LYS* 1.3 77.7 - - - +
19A VAL* 1.4 54.7 + - - +
21A SER* 3.4 6.5 + - - -
22A GLU* 2.8 39.3 + - - +
178A LEU* 3.9 13.7 - - + -
193A LEU* 3.7 32.8 + - + +
197A ASP* 2.8 43.6 + - - -
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Residues in contact with VAL 19 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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15A TRP 2.8 21.2 + - - +
16A ARG 3.5 8.5 - - - +
18A ARG* 1.4 71.3 - - - +
20A LYS* 1.4 55.7 + - - +
23A TYR* 2.9 35.2 + - - +
174A LEU* 3.7 14.6 - - + +
178A LEU* 3.7 28.2 - - + +
226A ALA* 3.5 30.7 - - + +
227A ILE* 4.1 3.6 - - - +
230A MET* 3.8 25.4 - - + -
231A PHE* 4.0 17.0 - - + -
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Residues in contact with LYS 20 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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16A ARG 3.1 10.7 + - - +
17A LYS* 3.5 15.9 - - + +
19A VAL* 1.4 80.2 - - - +
21A SER* 1.3 54.0 + - - +
23A TYR* 3.7 6.5 - - + +
24A MET* 2.8 63.2 + - + +
230A MET* 5.0 9.2 - - - -
231A PHE* 6.5 0.2 - - - -
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Residues in contact with SER 21 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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17A LYS* 3.0 23.3 + - - -
18A ARG* 3.6 7.4 - - - -
20A LYS* 1.3 72.8 - - - +
22A GLU* 1.4 67.9 + - - +
24A MET* 3.7 16.7 - - - +
25A ARG* 3.2 26.9 + - - +
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Residues in contact with GLU 22 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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18A ARG 2.8 25.9 + - - +
19A VAL 3.8 2.2 - - - +
21A SER* 1.4 79.4 + - - +
23A TYR* 1.3 55.4 + - - +
25A ARG* 2.8 35.9 + - - +
26A LEU* 2.8 39.1 + - - +
174A LEU* 4.0 13.5 - - + -
177A ALA* 4.0 10.0 - - + +
178A LEU* 4.4 8.5 - - + -
180A GLN* 3.3 20.4 - - - +
193A LEU* 3.4 26.3 - - + +
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Residues in contact with TYR 23 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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19A VAL 2.9 21.7 + - - +
20A LYS* 3.7 5.8 - - - +
22A GLU* 1.3 72.2 - - - +
24A MET* 1.3 64.0 + - + +
26A LEU* 3.4 6.2 + - - +
27A ARG* 2.9 74.9 + - + +
166A ILE* 4.1 29.3 + - + -
170A ILE* 5.0 18.7 - - + +
174A LEU* 3.6 17.6 - - + +
231A PHE* 3.8 39.1 - + + -
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Residues in contact with MET 24 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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20A LYS* 2.8 42.9 + - + +
21A SER* 3.7 22.2 - - - +
23A TYR* 1.3 79.3 - - + +
25A ARG* 1.3 57.8 + - - +
27A ARG* 3.9 11.5 - - - +
28A GLN* 3.2 33.8 + - + +
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Residues in contact with ARG 25 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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21A SER 3.2 14.2 + - - +
22A GLU* 2.8 68.9 + - - +
24A MET* 1.3 75.9 - - - +
26A LEU* 1.3 86.0 + - - +
28A GLN* 3.4 3.3 + - - +
29A LEU* 3.0 37.2 + - + +
177A ALA* 4.4 7.5 - - - +
180A GLN* 4.7 7.4 + - - +
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Residues in contact with LEU 26 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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22A GLU 2.8 21.3 + - - +
23A TYR* 3.8 4.0 - - - +
25A ARG* 1.3 101.7 - - - +
27A ARG* 1.3 56.5 + - - +
29A LEU* 3.5 17.0 - - + +
30A LYS* 2.9 36.8 + - - +
170A ILE* 4.3 15.7 - - + -
173A GLU* 3.9 23.8 - - + +
174A LEU* 3.7 40.4 - - + +
177A ALA* 4.3 9.0 - - + -
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Residues in contact with ARG 27 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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23A TYR* 2.9 59.4 + - + +
24A MET* 4.0 11.6 - - - +
26A LEU* 1.3 77.0 - - - +
28A GLN* 1.4 73.6 + - + +
30A LYS* 3.5 7.8 + - - +
31A ARG* 3.0 29.5 + - - +
170A ILE* 5.1 12.7 - - + +
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Residues in contact with GLN 28 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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24A MET* 3.2 22.2 + - + +
25A ARG* 3.4 3.6 + - - +
27A ARG* 1.4 91.1 + - + +
29A LEU* 1.4 59.1 + - - +
31A ARG* 3.3 38.1 + - - +
32A PHE* 3.1 33.6 + - - +
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Residues in contact with LEU 29 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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25A ARG* 3.0 24.8 + - + +
26A LEU* 3.5 22.4 - - + +
28A GLN* 1.4 72.3 - - - +
30A LYS* 1.4 58.7 + - + +
32A PHE* 2.9 6.4 + - - +
33A ARG* 2.8 41.2 + - + +
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Residues in contact with LYS 30 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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26A LEU* 2.9 25.7 + - + +
27A ARG* 3.9 5.6 - - - +
29A LEU* 1.4 73.8 - - + +
31A ARG* 1.3 56.0 + - - +
33A ARG* 3.6 25.4 - - - +
34A ARG* 2.9 34.9 + - - +
169A GLU* 2.8 30.6 + - - +
170A ILE* 3.8 37.5 - - + -
173A GLU* 3.1 29.7 + - - +
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Residues in contact with ARG 31 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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27A ARG 3.0 18.9 + - - +
28A GLN* 3.3 39.4 + - - +
30A LYS* 1.3 75.8 - - - +
32A PHE* 1.3 73.8 + - - +
34A ARG* 3.8 7.7 - - - +
35A ALA* 3.0 28.7 + - + +
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Residues in contact with PHE 32 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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28A GLN* 3.1 17.0 + - - +
29A LEU* 2.9 8.1 + - - +
31A ARG* 1.3 93.7 - - - +
33A ARG* 1.3 62.1 + - - +
35A ALA* 3.5 9.1 - - + +
36A ASP* 2.9 44.4 + - - +
39A LYS* 4.8 9.2 - - - -
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Residues in contact with ARG 33 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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29A LEU* 2.8 27.7 + - + +
30A LYS* 3.6 31.8 + - - +
32A PHE* 1.3 71.7 - - - +
34A ARG* 1.4 58.7 + - - +
36A ASP* 2.9 28.3 + - - +
37A GLU* 3.1 41.3 + - + +
169A GLU* 4.9 5.5 + - - -
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Residues in contact with ARG 34 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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30A LYS 2.9 19.6 + - - +
31A ARG* 3.8 6.5 - - - +
33A ARG* 1.4 75.1 - - - +
35A ALA* 1.4 58.6 + - - +
37A GLU* 3.3 18.8 + - - +
38A VAL* 3.0 35.8 + - - +
322E MET* 3.9 22.8 - - + +
337E THR* 4.2 13.3 - - - +
338E ILE* 2.5 35.2 + - - +
339E LEU* 4.5 3.2 + - - +
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Residues in contact with ALA 35 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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31A ARG* 3.0 21.4 + - + +
32A PHE* 3.5 18.6 - - + +
33A ARG 3.3 0.2 - - - -
34A ARG* 1.4 75.7 - - - +
36A ASP* 1.3 59.5 + - - +
38A VAL* 3.4 10.1 - - - +
39A LYS* 3.1 40.7 + - + +
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Residues in contact with ASP 36 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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32A PHE* 2.9 30.6 - - - +
33A ARG* 2.9 13.2 + - - +
35A ALA* 1.3 74.2 - - - +
37A GLU* 1.4 63.1 + - - +
39A LYS* 2.8 40.9 + - - +
40A SER* 2.9 18.6 + - - +
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Residues in contact with GLU 37 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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33A ARG* 3.1 46.3 + - + +
34A ARG* 3.3 29.2 + - - +
36A ASP* 1.4 72.2 - - - +
38A VAL* 1.4 56.2 + - - +
40A SER* 3.3 9.5 + - - -
41A MET* 2.9 31.8 + - - +
322E MET* 3.9 33.3 - - + +
323E GLU* 5.1 4.3 - - - +
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Residues in contact with VAL 38 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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34A ARG* 3.0 28.7 + - - +
35A ALA* 3.4 13.7 - - - +
36A ASP 3.1 0.2 - - - -
37A GLU* 1.4 74.6 - - - +
39A LYS* 1.4 62.7 + - + +
41A MET* 3.3 7.6 + - - +
42A PHE* 3.1 47.7 + - + -
322E MET* 3.7 23.1 - - + -
339E LEU* 3.5 36.1 - - + +
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Residues in contact with LYS 39 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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32A PHE* 4.8 9.7 - - - -
35A ALA* 3.1 32.0 + - + +
36A ASP* 2.8 34.9 + - - +
38A VAL* 1.4 73.2 - - + +
40A SER* 1.3 61.1 + - - +
42A PHE* 3.6 8.3 + - - +
43A ASN* 3.2 25.2 + - - +
379E VAL 5.1 3.4 - - - +
380E GLU* 3.8 28.2 - - - +
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Residues in contact with SER 40 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
36A ASP* 2.9 16.5 + - - +
37A GLU* 3.4 13.3 - - - -
39A LYS* 1.3 75.8 - - - +
41A MET* 1.4 52.4 + - - +
43A ASN* 3.5 7.6 + - - +
44A SER* 2.8 36.2 + - - -
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Residues in contact with MET 41 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
37A GLU 2.9 13.4 + - - +
38A VAL* 3.3 5.4 + - - +
40A SER* 1.4 73.5 - - - +
42A PHE* 1.3 55.7 + - - +
44A SER* 3.5 9.7 + - - +
45A ASN* 2.7 38.1 + - + +
304E LEU* 4.2 16.6 - - + -
318E LYS* 3.4 30.7 - - + -
322E MET* 3.0 53.8 - - + +
339E LEU* 3.7 13.0 - - + -
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Residues in contact with PHE 42 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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38A VAL* 3.1 44.6 + - + +
39A LYS* 3.9 7.6 - - + +
41A MET* 1.3 74.5 - - - +
43A ASN* 1.3 53.1 + - - +
45A ASN* 3.3 7.6 + - + +
46A ARG* 2.8 35.1 + - - +
49A ILE* 5.8 0.2 - - - +
301E LEU* 4.0 18.8 - - + -
304E LEU* 4.1 8.1 - - + -
316E CYS* 3.5 35.7 - - + -
339E LEU* 3.9 19.3 - - + -
340E GLY* 5.8 0.9 - - - -
342E PHE* 5.5 10.5 - + - -
377E LEU 5.1 7.4 - - - -
379E VAL* 5.0 11.9 - - + -
380E GLU* 3.3 27.0 - - - +
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Residues in contact with ASN 43 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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39A LYS 3.2 15.1 + - - +
40A SER* 3.6 6.0 - - - +
42A PHE* 1.3 76.5 - - - +
44A SER* 1.3 65.7 + - - +
46A ARG* 3.1 16.2 + - - +
47A GLN* 3.3 31.6 + - - +
380E GLU* 3.8 26.3 - - + +
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Residues in contact with SER 44 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
40A SER 2.8 20.7 + - - -
41A MET* 3.4 12.7 + - - +
43A ASN* 1.3 75.6 + - - +
45A ASN* 1.4 60.0 + - - +
47A GLN* 3.7 16.1 + - - +
48A LYS* 3.7 29.9 + - - +
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Residues in contact with ASN 45 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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41A MET* 2.7 24.3 + - + +
42A PHE* 3.4 6.6 + - - +
44A SER* 1.4 70.9 + - - +
46A ARG* 1.4 60.8 + - - +
47A GLN 3.3 0.2 - - - -
48A LYS* 3.2 16.2 + - - +
49A ILE* 3.0 39.7 + - - +
301E LEU* 2.8 28.2 + - - +
302E GLY* 3.6 1.0 - - - -
303E ASP* 2.9 30.5 + - - +
304E LEU* 3.8 22.0 + - + +
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Residues in contact with ARG 46 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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42A PHE* 2.8 17.4 + - - +
43A ASN* 3.1 11.0 + - - +
45A ASN* 1.4 69.8 - - - +
47A GLN* 1.4 53.9 + - + +
49A ILE* 3.1 32.4 + - - +
50A GLN* 2.8 58.5 + - - +
301E LEU* 4.3 5.1 - - - +
359E TRP 3.7 13.7 + - - -
360E GLN 3.0 29.9 + - - -
361E LYS* 3.7 12.9 - - - +
377E LEU* 3.7 23.6 + - - +
378E GLU* 3.9 18.5 - - - +
380E GLU* 2.8 36.8 + - + +
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Residues in contact with GLN 47 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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43A ASN* 3.3 36.7 + - - +
44A SER* 3.8 14.0 - - - +
45A ASN 3.3 0.4 - - - -
46A ARG* 1.4 76.7 - - + +
48A LYS* 1.4 50.9 - - - +
50A GLN* 3.1 20.4 + - - +
51A GLU* 2.8 55.2 + - - +
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Residues in contact with LYS 48 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
44A SER* 3.7 20.6 + - - +
45A ASN* 3.2 17.7 + - - +
47A GLN* 1.4 74.6 - - - +
49A ILE* 1.4 64.3 + - - +
51A GLU* 3.8 13.2 + - - +
52A ARG* 3.1 59.4 + - - +
232E LEU* 5.0 0.2 - - - -
302E GLY* 5.6 2.0 - - - -
303E ASP* 3.1 32.8 + - - +
325E ASP* 4.6 11.9 + - - -
326E ILE* 5.8 0.4 - - - +
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Residues in contact with ILE 49 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
45A ASN* 3.0 35.7 + - - +
46A ARG* 3.1 32.3 + - - +
48A LYS* 1.4 73.1 - - - +
50A GLN* 1.4 52.5 + - + +
53A THR* 2.8 44.7 + - + -
232E LEU* 3.9 8.7 - - + +
301E LEU* 3.9 26.0 - - + -
302E GLY* 3.7 20.6 - - - +
359E TRP 3.7 23.8 - - - +
360E GLN* 3.8 18.2 - - + +
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Residues in contact with GLN 50 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
46A ARG* 2.8 42.4 + - - +
47A GLN* 3.3 24.7 - - - +
49A ILE* 1.4 73.7 - - + +
51A GLU* 1.3 64.5 + - - +
53A THR* 3.4 10.7 - - + +
54A GLU* 3.0 25.9 + - - +
361E LYS* 5.6 7.3 - - - +
378E GLU* 4.6 7.9 + - - -
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Residues in contact with GLU 51 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
47A GLN* 2.8 46.3 + - - +
48A LYS* 3.8 14.8 + - - +
49A ILE 3.5 0.2 - - - -
50A GLN* 1.3 76.0 - - - +
52A ARG* 1.4 59.0 + - + +
54A GLU* 3.4 5.7 + - - +
55A ILE* 3.3 33.3 + - + +
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Residues in contact with ARG 52 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
48A LYS* 3.1 43.9 + - - +
51A GLU* 1.4 73.5 - - + +
53A THR* 1.3 64.6 + - - +
54A GLU 3.2 1.6 - - - -
55A ILE* 3.3 14.1 + - + +
56A LEU* 3.1 30.5 + - - +
231E ASP* 5.7 1.6 + - - +
232E LEU* 3.9 28.2 - - + +
233E LEU* 3.8 35.9 - - + +
236E LYS* 5.0 3.2 - - - +
302E GLY* 4.7 6.3 + - - -
303E ASP* 2.9 39.8 + - - -
327E ASP* 5.7 2.4 + - - -
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Residues in contact with THR 53 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
49A ILE* 2.8 32.9 + - + +
50A GLN* 3.4 13.9 - - + +
52A ARG* 1.3 74.1 - - - +
54A GLU* 1.4 58.7 + - - +
56A LEU* 4.6 1.8 - - - -
57A ASN* 3.1 27.4 + - - +
232E LEU* 4.0 13.9 - - - +
358E PHE* 3.4 37.9 + - - -
359E TRP* 3.3 33.4 - - + +
----------------------------------------------------------
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Residues in contact with GLU 54 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
50A GLN 3.0 17.6 + - - +
51A GLU* 3.7 7.0 - - - +
52A ARG 3.2 0.2 - - - -
53A THR* 1.4 72.8 - - - +
55A ILE* 1.4 56.3 + - - +
57A ASN* 3.7 10.2 + - - -
58A GLN* 2.8 71.2 + - + +
61A LYS* 5.2 1.0 + - - -
359E TRP* 3.8 22.0 - - - -
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Residues in contact with ILE 55 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
51A GLU* 3.3 23.2 + - + +
52A ARG* 3.3 19.9 + - + +
54A GLU* 1.4 76.3 - - + +
56A LEU* 1.3 56.4 + - - +
58A GLN* 3.4 6.4 + - - +
59A GLU* 3.1 34.9 + - + +
187E ARG* 3.8 27.6 - - - +
233E LEU* 4.1 20.9 - - + -
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Residues in contact with LEU 56 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
52A ARG 3.1 14.8 + - - +
53A THR* 3.9 4.9 - - - +
55A ILE* 1.3 71.8 - - - +
57A ASN* 1.3 61.3 + - - +
59A GLU* 3.4 10.9 + - - +
60A TRP* 3.0 27.2 + - - +
63A ARG* 5.0 1.6 + - - -
186E PRO* 3.8 18.8 - - + +
187E ARG* 3.8 29.4 - - + +
232E LEU* 3.3 53.2 - - + +
233E LEU* 5.0 2.7 - - + -
358E PHE* 4.0 20.9 - - + -
406E ARG* 4.2 0.7 + - - -
----------------------------------------------------------
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Residues in contact with ASN 57 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
53A THR 3.1 19.9 + - - +
54A GLU* 3.3 20.6 + - - +
56A LEU* 1.3 72.6 - - - +
58A GLN* 1.4 60.2 + - - +
60A TRP* 3.4 18.8 + - - +
61A LYS* 3.1 48.1 + - - +
358E PHE* 4.0 3.1 - - + -
359E TRP* 3.6 30.0 - - + -
406E ARG* 3.3 24.1 + - - +
----------------------------------------------------------
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Residues in contact with GLN 58 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
54A GLU* 2.8 45.4 + - + +
55A ILE* 3.7 7.0 - - - +
57A ASN* 1.4 76.6 + - - +
59A GLU* 1.4 59.8 + - + +
61A LYS* 3.2 37.4 + - - +
62A GLN* 3.1 40.1 + - - +
----------------------------------------------------------
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Residues in contact with GLU 59 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
55A ILE* 3.1 22.1 + - + +
56A LEU* 3.4 14.1 + - - +
58A GLN* 1.4 74.7 - - + +
60A TRP* 1.3 59.8 + - - +
62A GLN* 3.6 17.0 + - - +
63A ARG* 3.2 30.7 + - - +
186E PRO 4.7 1.0 - - - +
187E ARG* 3.1 58.5 + - - +
----------------------------------------------------------
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Residues in contact with TRP 60 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
56A LEU 3.0 17.1 + - - +
57A ASN* 3.4 26.0 - - - +
58A GLN 3.2 0.2 - - - -
59A GLU* 1.3 76.1 - - - +
61A LYS* 1.3 89.0 + - + +
62A GLN 3.2 0.4 - - - -
63A ARG* 3.1 49.5 + - + +
64A ARG* 4.9 0.3 + - - -
89E TRP 3.3 16.2 + - - -
90E HIS* 3.6 12.4 + - - -
91E SER 3.4 23.3 + - - -
92E LYS* 4.4 2.0 - - - +
93E GLU* 4.0 42.4 - - + -
406E ARG* 3.5 40.8 - - - +
----------------------------------------------------------
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Residues in contact with LYS 61 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
54A GLU* 5.2 1.2 + - - -
57A ASN* 3.1 28.2 + - - +
58A GLN* 3.2 39.1 + - - +
60A TRP* 1.3 91.8 - - + +
62A GLN* 1.4 63.5 + - - +
63A ARG 3.3 0.3 + - - -
64A ARG* 2.9 38.7 + - - +
93E GLU* 4.4 15.5 - - - +
----------------------------------------------------------
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Residues in contact with GLN 62 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
58A GLN* 3.1 37.0 + - - +
59A GLU* 3.8 11.0 - - - +
60A TRP 3.2 1.0 - - - -
61A LYS* 1.4 83.5 - - - +
63A ARG* 1.3 60.7 + - + +
64A ARG* 4.3 4.4 + - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il