Contacts of the helix formed by residues 11 - 62 (chain B) in PDB entry 5IJ7
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with GLY 11 (chain B).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
10B LYS* 1.3 73.1 - - - +
12B PRO* 1.4 72.7 - - - +
13B ILE 3.4 2.7 - - - -
14B CYS* 3.2 12.4 + - - +
15B TRP* 3.1 30.5 + - - -
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Residues in contact with PRO 12 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
11B GLY* 1.4 79.8 - - - +
13B ILE* 1.4 62.2 + - + +
15B TRP* 3.5 7.4 + - + +
16B ARG* 2.9 49.8 + - - +
226B ALA* 5.4 0.5 - - - +
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Residues in contact with ILE 13 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
11B GLY 3.4 0.4 - - - -
12B PRO* 1.4 75.6 - - + +
14B CYS* 1.3 59.2 - - - +
16B ARG* 3.4 27.1 - - - +
17B LYS* 3.0 29.7 + - + +
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Residues in contact with CYS 14 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
10B LYS* 3.7 32.1 - - + -
11B GLY* 3.2 21.2 + - - +
13B ILE* 1.3 79.1 - - - +
15B TRP* 1.3 56.5 + - - +
17B LYS* 3.3 8.1 + - - +
18B ARG* 3.0 53.0 + - - +
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Residues in contact with TRP 15 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
10B LYS* 3.8 19.0 - - + +
11B GLY 3.1 24.2 + - - +
12B PRO* 3.9 6.5 - - + +
14B CYS* 1.3 72.8 - - - +
16B ARG* 1.3 59.7 + - - +
18B ARG* 3.3 42.0 + - - +
19B VAL* 3.1 31.7 + - - +
178B LEU* 3.4 40.8 - - + -
193B LEU* 4.4 0.7 - - + -
194B ASP* 3.8 13.5 - - + -
197B ASP* 4.1 1.3 - - - -
222B LYS* 3.4 57.6 - - + +
223B ILE* 3.6 27.8 - - + -
226B ALA* 3.7 17.9 - - + -
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Residues in contact with ARG 16 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
12B PRO* 2.9 36.2 + - - +
13B ILE* 3.4 33.1 - - - +
14B CYS 3.3 0.2 - - - -
15B TRP* 1.3 73.4 - - - +
17B LYS* 1.4 64.2 + - - +
19B VAL* 3.3 5.3 + - - +
20B LYS* 3.1 22.2 + - - +
226B ALA* 4.1 7.6 - - - +
229B SER* 3.5 35.2 + - - +
230B MET* 3.6 38.2 - - + +
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Residues in contact with LYS 17 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
13B ILE* 3.0 19.1 + - + +
14B CYS* 3.3 8.0 + - - +
16B ARG* 1.4 74.0 - - - +
18B ARG* 1.3 53.3 + - + +
20B LYS* 3.2 11.5 + - + +
21B SER* 2.8 42.0 + - - +
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Residues in contact with ARG 18 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
10B LYS* 3.7 19.7 - - - +
14B CYS* 3.0 36.6 + - - +
15B TRP* 3.3 44.0 - - + +
16B ARG 3.2 0.2 - - - -
17B LYS* 1.3 73.4 - - + +
19B VAL* 1.3 56.1 + - - +
21B SER* 3.2 7.0 + - - +
22B GLU* 2.8 39.2 + - - +
178B LEU* 3.8 14.6 - - + -
193B LEU* 3.8 29.3 + - + +
197B ASP* 2.8 43.8 + - - -
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Residues in contact with VAL 19 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
15B TRP 3.1 17.2 + - - +
16B ARG* 3.3 6.5 + - - +
18B ARG* 1.3 73.2 - - - +
20B LYS* 1.3 54.1 + - - +
23B TYR* 2.8 37.4 + - - +
174B LEU* 3.7 14.4 - - + +
178B LEU* 3.7 26.7 - - + -
226B ALA* 3.9 20.9 - - + +
227B ILE* 3.9 11.2 - - + +
230B MET* 4.0 15.7 - - + -
231B PHE* 3.7 29.8 - - + -
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Residues in contact with LYS 20 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
16B ARG 3.1 12.9 + - - +
17B LYS* 3.2 13.4 + - + +
19B VAL* 1.3 76.6 - - - +
21B SER* 1.3 57.5 + - - +
23B TYR* 3.7 4.2 - - - +
24B MET* 3.0 60.4 + - + +
230B MET* 5.0 11.4 - - - +
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Residues in contact with SER 21 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
17B LYS* 2.8 29.5 + - - +
18B ARG* 3.2 14.7 + - - +
20B LYS* 1.3 75.4 - - - +
22B GLU* 1.4 63.3 + - - +
24B MET* 3.5 6.4 + - - +
25B ARG* 3.1 27.2 + - - +
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Residues in contact with GLU 22 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
18B ARG 2.8 22.8 + - - +
21B SER* 1.4 75.1 + - - +
23B TYR* 1.4 58.3 + - - +
25B ARG* 2.8 40.8 + - - +
26B LEU* 3.1 33.1 + - - +
174B LEU* 3.9 16.6 - - + -
177B ALA* 3.9 11.5 - - + +
178B LEU* 4.3 5.4 - - + -
180B GLN* 3.6 17.0 - - - +
193B LEU* 3.8 28.3 - - + +
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Residues in contact with TYR 23 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
19B VAL 2.8 24.3 + - - +
20B LYS* 3.7 4.9 - - + +
22B GLU* 1.4 70.7 - - - +
24B MET* 1.3 73.3 + - - +
25B ARG 3.2 0.3 + - - -
26B LEU* 3.2 4.8 + - - +
27B ARG* 2.8 60.0 + - + +
166B ILE* 3.7 35.1 + - + -
170B ILE* 5.1 20.6 - - + +
174B LEU* 3.6 14.0 - - + +
231B PHE* 3.5 39.1 - + + -
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Residues in contact with MET 24 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
20B LYS* 3.0 46.8 + - + +
21B SER* 3.8 5.8 - - - +
23B TYR* 1.3 92.9 - - - +
25B ARG* 1.3 59.4 + - - +
27B ARG* 3.4 41.5 + - - +
28B GLN* 3.3 24.8 + - - +
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Residues in contact with ARG 25 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
21B SER 3.1 14.1 + - - +
22B GLU* 2.8 52.1 + - - +
23B TYR 3.1 0.2 - - - -
24B MET* 1.3 76.9 - - - +
26B LEU* 1.3 89.1 - - - +
28B GLN* 3.4 8.6 + - - +
29B LEU* 2.9 48.0 + - + +
177B ALA* 4.3 9.7 - - - +
180B GLN* 4.9 6.9 + - - +
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Residues in contact with LEU 26 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
22B GLU 3.1 16.4 + - - +
23B TYR* 3.8 2.7 - - - +
25B ARG* 1.3 107.5 - - - +
27B ARG* 1.3 59.0 + - - +
29B LEU* 3.4 15.9 + - + +
30B LYS* 3.0 35.0 + - - +
170B ILE* 3.7 17.3 - - + -
173B GLU* 3.7 29.6 - - + +
174B LEU* 3.7 35.2 - - + +
177B ALA* 4.2 10.1 - - + -
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Residues in contact with ARG 27 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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23B TYR* 2.8 47.1 + - + +
24B MET* 3.4 44.3 + - - +
26B LEU* 1.3 76.2 - - - +
28B GLN* 1.3 71.7 + - - +
30B LYS* 3.5 3.1 + - - +
31B ARG* 3.0 58.7 + - + +
170B ILE* 4.7 15.1 - - + +
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Residues in contact with GLN 28 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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24B MET 3.3 18.9 + - - +
25B ARG* 3.7 7.5 - - - +
27B ARG* 1.3 85.5 - - - +
29B LEU* 1.3 68.1 + - - +
30B LYS 3.4 0.2 - - - -
31B ARG* 3.4 26.2 - - - +
32B PHE* 3.1 65.0 + - + -
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Residues in contact with LEU 29 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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25B ARG* 2.9 34.1 + - + +
26B LEU* 3.6 25.1 - - + +
27B ARG 3.4 0.2 - - - -
28B GLN* 1.3 84.1 - - - +
30B LYS* 1.3 66.3 + - + +
32B PHE* 3.5 12.0 + - + +
33B ARG* 2.9 41.4 + - + +
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Residues in contact with LYS 30 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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26B LEU 3.0 20.2 + - - +
27B ARG* 4.0 4.7 - - - +
29B LEU* 1.3 81.1 + - + +
31B ARG* 1.3 59.9 - - - +
33B ARG* 3.1 44.5 - - + +
34B ARG* 3.0 33.9 + - - +
169B GLU* 3.4 22.2 - - - +
170B ILE* 5.2 14.8 - - + -
173B GLU* 3.4 36.3 - - - +
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Residues in contact with ARG 31 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
27B ARG* 3.0 43.9 + - + +
28B GLN* 3.4 33.2 - - - +
30B LYS* 1.3 76.6 - - - +
32B PHE* 1.3 81.0 + - - +
34B ARG* 3.5 12.7 - - + +
35B ALA* 3.2 28.2 + - - +
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Residues in contact with PHE 32 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
28B GLN* 3.1 57.8 + - + +
29B LEU* 3.6 13.0 - - + +
30B LYS 3.3 0.2 - - - -
31B ARG* 1.3 104.1 - - - +
33B ARG* 1.3 64.5 + - + +
35B ALA* 3.3 8.9 + - + +
36B ASP* 3.3 29.7 + - - +
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Residues in contact with ARG 33 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
29B LEU* 2.9 26.7 + - + +
30B LYS* 3.1 35.6 - - + +
32B PHE* 1.3 75.0 - - + +
34B ARG* 1.3 61.7 + - - +
36B ASP* 3.5 10.6 + - - +
37B GLU* 3.2 50.6 + - - +
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Residues in contact with ARG 34 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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30B LYS 3.0 22.3 + - - +
31B ARG* 3.5 13.2 - - - +
33B ARG* 1.3 73.7 - - - +
35B ALA* 1.4 58.8 + - - +
37B GLU* 3.2 15.9 + - - +
38B VAL* 2.8 48.4 + - + +
322F MET* 3.4 26.6 - - + +
337F THR* 3.8 11.3 - - - +
338F ILE 3.1 27.1 + - - +
339F LEU 5.2 0.6 + - - -
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Residues in contact with ALA 35 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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31B ARG 3.2 15.7 + - - +
32B PHE* 3.3 15.3 - - + +
34B ARG* 1.4 74.7 - - - +
36B ASP* 1.4 65.9 + - - +
38B VAL* 3.5 7.5 + - - +
39B LYS* 3.2 35.6 + - + +
381F ASP* 5.2 1.9 - - - +
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Residues in contact with ASP 36 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
32B PHE* 3.3 18.1 + - - +
33B ARG* 3.8 11.2 - - - +
35B ALA* 1.4 76.4 - - - +
37B GLU* 1.4 52.6 + - + +
39B LYS* 3.3 13.9 + - - +
40B SER* 2.8 35.7 + - - -
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Residues in contact with GLU 37 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
33B ARG* 3.2 48.6 + - - +
34B ARG* 3.2 17.4 + - - +
36B ASP* 1.4 77.9 - - - +
38B VAL* 1.4 55.7 + - - +
40B SER* 3.6 7.6 + - - -
41B MET* 3.0 31.4 + - - +
322F MET* 4.1 33.6 - - + +
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Residues in contact with VAL 38 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
34B ARG* 2.8 34.4 + - + +
35B ALA* 3.8 8.1 - - - +
36B ASP 3.3 0.2 - - - -
37B GLU* 1.4 67.9 - - - +
39B LYS* 1.4 56.9 + - - +
41B MET* 3.1 7.9 + - - +
42B PHE* 2.8 65.6 + - + -
322F MET* 3.9 17.9 - - + -
339F LEU* 3.8 29.6 - - + +
380F GLU 4.3 0.2 - - - +
381F ASP* 4.2 16.4 - - - +
382F PRO* 5.3 0.7 - - + -
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Residues in contact with LYS 39 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
35B ALA* 3.2 26.7 + - + +
36B ASP* 3.7 11.4 - - - +
38B VAL* 1.4 70.6 - - - +
40B SER* 1.3 63.7 + - - +
42B PHE* 4.1 1.0 - - - +
43B ASN* 2.8 32.6 + - - -
380F GLU* 3.7 48.7 + - + +
381F ASP* 4.1 18.8 + - - +
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Residues in contact with SER 40 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
36B ASP 2.8 17.6 + - - -
37B GLU* 3.7 9.2 - - - -
38B VAL 3.2 0.2 - - - -
39B LYS* 1.3 77.0 - - - +
41B MET* 1.4 51.3 + - - +
43B ASN* 3.4 5.5 + - - +
44B SER* 2.9 36.7 + - - -
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Residues in contact with MET 41 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
37B GLU 3.0 21.1 + - - +
38B VAL* 3.3 9.2 - - - +
40B SER* 1.4 71.5 - - - +
42B PHE* 1.3 55.0 + - - +
44B SER* 3.3 9.7 + - - -
45B ASN* 2.8 38.2 + - - +
304F LEU* 4.1 12.3 - - + -
318F LYS* 4.2 17.0 - - + -
322F MET* 3.1 38.1 - - + +
323F GLU* 4.9 4.3 - - - -
339F LEU* 3.7 24.0 - - + -
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Residues in contact with PHE 42 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
38B VAL* 2.8 43.5 + - + +
39B LYS 4.1 4.0 - - - +
41B MET* 1.3 71.9 - - - +
43B ASN* 1.4 55.2 + - - +
45B ASN* 3.4 9.7 + - - +
46B ARG* 2.8 35.6 + - - +
301F LEU* 4.5 11.4 - - + -
304F LEU* 3.9 15.0 - - + -
316F CYS* 3.8 31.0 - - + -
339F LEU* 4.1 14.4 - - + -
342F PHE* 5.8 4.0 - + - -
377F LEU 6.0 2.2 - - - -
379F VAL 5.0 5.6 - - - +
380F GLU* 3.2 30.3 - - - +
382F PRO* 3.8 25.8 - - + -
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Residues in contact with ASN 43 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
39B LYS* 2.8 25.8 + - - +
40B SER* 3.7 5.4 - - - +
42B PHE* 1.4 73.7 - - - +
44B SER* 1.3 66.3 + - - +
46B ARG* 3.3 9.3 + - - +
47B GLN* 3.2 30.0 + - - +
380F GLU* 3.4 32.9 + - - +
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Residues in contact with SER 44 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
40B SER* 2.9 20.7 + - - -
41B MET* 3.6 9.7 - - - -
43B ASN* 1.3 74.1 - - - +
45B ASN* 1.4 61.7 + - - +
47B GLN* 3.1 22.1 + - - +
48B LYS* 3.4 22.8 + - - +
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Residues in contact with ASN 45 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
41B MET* 2.8 25.5 + - + +
42B PHE* 3.4 9.6 + - - +
44B SER* 1.4 71.8 + - - +
46B ARG* 1.4 53.5 + - - +
48B LYS* 2.9 34.1 + - - +
49B ILE* 3.0 27.2 + - - +
301F LEU* 3.2 22.1 + - - +
302F GLY* 3.6 2.3 - - - -
303F ASP* 3.1 31.5 + - - +
304F LEU* 3.4 28.9 - - + +
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Residues in contact with ARG 46 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
42B PHE 2.8 21.1 + - - +
43B ASN* 3.4 10.5 - - - +
45B ASN* 1.4 72.1 - - - +
47B GLN* 1.4 59.1 + - - +
49B ILE* 3.5 31.4 - - - +
50B GLN* 3.0 50.8 + - - +
301F LEU* 4.6 3.2 - - - +
359F TRP 3.1 18.6 + - - -
360F GLN 2.7 31.1 + - - -
361F LYS* 3.6 8.3 - - - +
377F LEU* 3.3 30.9 + - - +
378F GLU* 4.2 22.1 - - - +
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Residues in contact with GLN 47 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
43B ASN* 3.2 19.9 + - - +
44B SER* 3.1 14.2 + - - +
46B ARG* 1.4 75.0 - - - +
48B LYS* 1.3 61.1 + - + +
50B GLN* 3.1 26.0 + - - +
51B GLU* 2.9 52.9 + - - +
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Residues in contact with LYS 48 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
44B SER* 3.5 23.0 + - - +
45B ASN* 2.9 19.0 + - - +
47B GLN* 1.3 73.5 - - + +
49B ILE* 1.4 65.5 + - + +
51B GLU* 3.2 12.8 + - - +
52B ARG* 2.9 64.1 + - - +
302F GLY* 5.6 1.6 - - - -
303F ASP* 3.3 29.6 + - - +
325F ASP* 5.4 6.2 + - - -
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Residues in contact with ILE 49 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
45B ASN* 3.0 32.5 + - - +
46B ARG* 3.5 43.5 - - - +
48B LYS* 1.4 74.0 - - - +
50B GLN* 1.4 53.0 + - + +
52B ARG* 3.8 0.9 - - - +
53B THR* 2.8 44.8 + - + +
232F LEU* 3.9 7.8 - - - +
301F LEU* 3.6 31.4 - - + -
302F GLY* 3.6 23.8 - - - +
359F TRP 3.9 10.8 - - - +
360F GLN* 3.9 15.7 - - + +
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Residues in contact with GLN 50 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
46B ARG* 3.0 35.3 + - - +
47B GLN* 3.1 32.0 + - - +
49B ILE* 1.4 75.3 - - + +
51B GLU* 1.3 61.5 + - - +
53B THR* 3.3 8.0 + - - +
54B GLU* 3.2 24.9 + - - +
359F TRP* 5.6 0.8 - - + -
361F LYS* 4.8 12.0 - - - +
378F GLU* 4.1 17.8 + - - -
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Residues in contact with GLU 51 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
47B GLN* 2.9 50.3 + - - +
48B LYS* 3.6 13.3 - - - +
50B GLN* 1.3 73.7 - - - +
52B ARG* 1.4 64.4 + - + +
54B GLU* 3.5 5.9 + - - +
55B ILE* 3.3 31.0 + - + +
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Residues in contact with ARG 52 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
48B LYS* 2.9 52.9 + - - +
51B GLU* 1.4 76.2 - - + +
53B THR* 1.4 62.9 + - - +
54B GLU 3.2 1.8 - - - -
55B ILE* 3.3 20.9 + - + +
56B LEU* 3.3 20.1 + - - +
231F ASP* 5.8 0.8 + - - -
232F LEU* 3.7 28.9 - - + -
233F LEU* 3.7 37.7 - - + +
236F LYS* 5.1 2.4 - - - +
302F GLY 4.7 6.1 + - - -
303F ASP* 3.0 33.3 + - - -
327F ASP* 5.8 2.0 + - - -
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Residues in contact with THR 53 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
49B ILE* 2.8 39.6 + - + +
50B GLN* 3.3 13.7 + - - +
52B ARG* 1.4 71.3 - - - +
54B GLU* 1.4 55.6 + - - +
56B LEU* 3.5 2.1 + - - -
57B ASN* 2.9 25.5 + - - +
232F LEU* 3.8 20.0 - - + -
358F PHE* 3.3 43.5 - - + +
359F TRP* 3.6 31.9 + - - -
360F GLN* 4.8 0.7 - - + -
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Residues in contact with GLU 54 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
50B GLN 3.2 17.4 + - - +
51B GLU* 3.6 7.0 - - - +
52B ARG 3.2 0.4 - - - -
53B THR* 1.4 74.8 - - - +
55B ILE* 1.4 53.6 + - - +
57B ASN* 3.7 14.7 - - - +
58B GLN* 2.8 66.6 + - + +
61B LYS* 5.6 0.5 + - - -
359F TRP* 4.5 13.0 - - + -
----------------------------------------------------------
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Residues in contact with ILE 55 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
51B GLU* 3.3 24.0 + - + +
52B ARG* 3.3 19.2 + - + +
54B GLU* 1.4 74.4 - - + +
56B LEU* 1.4 57.5 + - - +
58B GLN* 3.4 6.8 + - - +
59B GLU* 3.1 35.4 + - + +
187F ARG* 4.0 25.6 - - - +
233F LEU* 4.2 21.8 - - + -
----------------------------------------------------------
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Residues in contact with LEU 56 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
52B ARG 3.3 10.9 + - - +
53B THR* 3.7 7.4 - - - +
55B ILE* 1.4 75.0 - - - +
57B ASN* 1.4 58.9 + - - +
59B GLU* 3.4 10.6 + - - +
60B TRP* 3.0 27.5 + - - +
63B ARG* 4.9 1.9 + - - -
186F PRO* 3.7 17.9 - - + +
187F ARG* 3.7 34.1 - - + +
232F LEU* 3.3 48.9 - - + +
233F LEU* 5.1 3.4 - - + -
358F PHE* 3.9 20.0 - - + -
406F ARG* 4.2 0.7 + - - -
----------------------------------------------------------
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Residues in contact with ASN 57 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
53B THR 2.9 18.4 + - - +
54B GLU* 3.3 15.2 + - - +
56B LEU* 1.4 72.3 - - - +
58B GLN* 1.4 60.2 + - - +
60B TRP* 3.4 22.2 + - - +
61B LYS* 3.1 43.9 + - - +
358F PHE* 4.0 2.4 - - + -
359F TRP* 3.5 33.7 - - + -
406F ARG* 3.2 28.2 - - - +
----------------------------------------------------------
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Residues in contact with GLN 58 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
54B GLU* 2.8 41.9 + - + +
55B ILE* 3.7 6.7 - - - +
56B LEU 3.3 0.2 - - - -
57B ASN* 1.4 77.7 - - - +
59B GLU* 1.3 60.2 - - + +
61B LYS* 3.2 38.5 + - - +
62B GLN* 3.1 40.0 + - - +
----------------------------------------------------------
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Residues in contact with GLU 59 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
55B ILE* 3.1 23.2 + - + +
56B LEU* 3.4 14.4 + - - +
58B GLN* 1.3 75.1 - - + +
60B TRP* 1.3 60.4 + - - +
62B GLN* 3.6 16.6 + - - +
63B ARG* 3.2 31.3 + - - +
186F PRO 4.8 0.7 - - - +
187F ARG* 3.3 56.8 + - - +
----------------------------------------------------------
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Residues in contact with TRP 60 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
56B LEU 3.0 16.9 + - - +
57B ASN* 3.4 28.7 - - - +
58B GLN 3.2 0.4 - - - -
59B GLU* 1.3 73.9 - - - +
61B LYS* 1.3 91.6 + - + +
62B GLN 3.2 0.4 - - - -
63B ARG* 3.1 47.2 + - + +
89F TRP 3.2 16.8 + - - -
90F HIS* 3.6 12.2 + - - -
91F SER 3.3 24.4 + - - -
92F LYS* 4.4 1.9 - - - +
93F GLU* 4.0 39.3 - - + -
406F ARG* 3.4 41.5 - - - +
----------------------------------------------------------
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Residues in contact with LYS 61 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
54B GLU* 5.6 0.6 + - - -
57B ASN* 3.1 25.6 + - - +
58B GLN* 3.2 39.4 + - - +
60B TRP* 1.3 93.6 - - + +
62B GLN* 1.4 65.9 + - - +
63B ARG 3.3 8.3 + - - +
64B ARG* 4.2 16.6 + - - -
93F GLU* 4.4 16.6 - - - +
----------------------------------------------------------
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Residues in contact with GLN 62 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
273A GLN* 5.3 6.8 + - - -
276A GLN* 6.0 0.5 + - - -
58B GLN* 3.1 36.9 + - - +
59B GLU* 3.8 11.7 - - - +
60B TRP 3.2 1.0 - - - -
61B LYS* 1.4 83.5 - - - +
63B ARG* 1.3 61.3 + - + +
64B ARG* 4.3 3.6 + - - -
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il