Contacts of the helix formed by residues 335 - 406 (chain Z) in PDB entry 5IJO
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with SER 335 (chain Z).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
334Z GLU* 1.3 80.7 - - - +
336Z LEU* 1.4 47.9 + - - +
338Z ASN* 3.3 17.9 - - - +
339Z LYS* 3.8 5.0 + - - +
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Residues in contact with LEU 336 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
334Z GLU* 3.2 1.4 - - - +
335Z SER* 1.4 73.0 - - - +
337Z ILE* 1.3 57.9 + - - +
338Z ASN 3.0 2.2 - - - -
339Z LYS* 2.8 33.1 + - - +
340Z TRP* 3.1 5.5 + - - +
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Residues in contact with ILE 337 (chain Z).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
133X GLU* 6.2 4.3 - - + -
334Z GLU* 3.8 13.5 + - + +
335Z SER 3.8 0.6 - - - -
336Z LEU* 1.3 78.1 - - - +
338Z ASN* 1.3 62.5 + - - +
340Z TRP* 2.8 24.0 + - + +
341Z SER* 3.5 5.9 + - - -
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Residues in contact with ASN 338 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
334Z GLU 3.7 10.0 + - - +
335Z SER* 3.3 15.7 - - - +
337Z ILE* 1.3 79.3 - - - +
339Z LYS* 1.3 67.3 + - - +
340Z TRP 3.0 0.9 + - - -
341Z SER* 3.5 2.1 + - - -
342Z LEU* 3.2 22.5 + - - +
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Residues in contact with LYS 339 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
335Z SER 4.4 3.1 - - - +
336Z LEU* 2.8 18.9 + - - +
338Z ASN* 1.3 85.1 - - - +
340Z TRP* 1.4 61.6 + - - +
342Z LEU* 4.4 2.6 - - - +
343Z GLU* 3.2 23.2 + - - +
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Residues in contact with TRP 340 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
137X ILE* 5.2 14.6 - - + -
336Z LEU 3.1 6.1 + - - +
337Z ILE* 2.8 21.5 + - + +
339Z LYS* 1.4 80.8 - - - +
341Z SER* 1.4 48.7 + - - +
343Z GLU* 3.2 4.9 + - - +
344Z LEU* 2.8 33.6 + - - +
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Residues in contact with SER 341 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
337Z ILE 3.5 5.1 + - - -
338Z ASN* 3.5 4.8 + - - -
340Z TRP* 1.4 69.0 - - - +
342Z LEU* 1.4 64.4 + - - +
343Z GLU 3.1 1.3 - - - -
344Z LEU* 3.4 9.4 - - - -
345Z GLU* 2.6 33.5 + - - +
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Residues in contact with LEU 342 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
338Z ASN 3.2 14.8 + - - +
339Z LYS* 4.6 2.5 - - - +
341Z SER* 1.4 77.8 - - - +
343Z GLU* 1.3 58.0 + - - +
345Z GLU* 4.2 2.6 - - - +
346Z ASP* 2.8 32.4 + - - +
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Residues in contact with GLU 343 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
339Z LYS 3.2 20.8 + - - +
340Z TRP* 3.4 4.7 - - - +
341Z SER 3.1 0.2 - - - -
342Z LEU* 1.3 76.3 - - - +
344Z LEU* 1.3 58.1 + - - +
346Z ASP* 3.6 5.3 - - - +
347Z GLN* 2.9 32.4 + - - +
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Residues in contact with LEU 344 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
137X ILE* 6.4 2.0 - - + -
140X LYS* 5.9 7.0 - - + -
340Z TRP 2.8 16.9 + - - +
341Z SER* 3.4 13.5 - - - +
343Z GLU* 1.3 79.6 - - - +
345Z GLU* 1.4 56.5 + - - +
347Z GLN* 3.8 3.6 - - - +
348Z GLU* 2.9 30.2 + - - +
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Residues in contact with GLU 345 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
341Z SER* 2.6 21.3 + - - +
342Z LEU* 4.2 2.7 - - - +
344Z LEU* 1.4 72.4 - - - +
346Z ASP* 1.4 51.5 + - - +
348Z GLU* 3.3 8.4 - - - +
349Z ARG* 2.7 34.1 + - - +
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Residues in contact with ASP 346 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
342Z LEU 2.8 20.9 + - - +
343Z GLU* 3.6 6.7 - - - +
345Z GLU* 1.4 74.4 - - - +
347Z GLN* 1.4 61.9 + - - +
349Z ARG* 3.2 21.3 - - - +
350Z HIS* 3.3 7.3 + - - +
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Residues in contact with GLN 347 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
343Z GLU 2.9 18.2 + - - +
344Z LEU* 3.8 3.4 - - - +
346Z ASP* 1.4 73.5 - - - +
348Z GLU* 1.3 55.4 + - - +
350Z HIS* 3.2 8.7 + - - +
351Z PHE* 2.7 35.0 + - - +
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Residues in contact with GLU 348 (chain Z).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
149X GLY 4.8 13.0 - - - +
150X THR* 5.0 10.8 - - - +
344Z LEU 2.9 18.5 + - - +
345Z GLU* 3.3 11.2 - - - +
347Z GLN* 1.3 72.9 - - - +
349Z ARG* 1.4 68.0 + - - +
350Z HIS 3.2 0.5 + - - -
351Z PHE* 3.8 6.3 - - - +
352Z LEU* 3.2 25.1 + - - +
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Residues in contact with ARG 349 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
345Z GLU 2.7 14.5 + - - +
346Z ASP* 3.2 13.5 - - - +
348Z GLU* 1.4 79.5 - - - +
350Z HIS* 1.4 57.7 + - - +
352Z LEU* 3.9 2.9 + - - +
353Z GLN* 3.5 15.1 + - - +
----------------------------------------------------------
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Residues in contact with HIS 350 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
346Z ASP 3.3 8.5 + - - +
347Z GLN* 3.2 13.2 + - - +
349Z ARG* 1.4 76.4 - - - +
351Z PHE* 1.3 66.4 + - - +
352Z LEU 3.2 2.0 - - - -
353Z GLN* 2.9 19.7 + - - +
354Z GLN* 2.9 14.1 + - - +
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Residues in contact with PHE 351 (chain Z).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
151X GLY* 6.0 6.5 - - - -
329X GLY 6.6 0.2 - - - -
347Z GLN 2.7 19.5 + - - +
348Z GLU* 3.2 8.7 + - - +
350Z HIS* 1.3 72.6 - - - +
352Z LEU* 1.3 51.3 + - - +
354Z GLN* 3.2 7.9 + - - +
355Z ALA* 2.8 36.0 + - - +
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Residues in contact with LEU 352 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
152X LYS 5.8 4.0 - - - +
348Z GLU 3.2 12.9 + - - +
349Z ARG* 4.0 3.1 - - - +
351Z PHE* 1.3 76.4 - - + +
353Z GLN* 1.4 64.4 + - - +
355Z ALA* 3.6 7.1 + - + +
356Z THR* 3.2 22.0 + - - -
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Residues in contact with GLN 353 (chain Z).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
349Z ARG 3.5 10.8 + - - +
350Z HIS* 2.9 16.0 + - - +
352Z LEU* 1.4 75.5 - - - +
354Z GLN* 1.4 61.3 + - - +
356Z THR* 3.2 13.0 + - - -
357Z GLN* 3.2 9.7 + - - +
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Residues in contact with GLN 354 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
350Z HIS 2.9 8.1 + - - +
351Z PHE* 3.5 10.1 - - - +
353Z GLN* 1.4 74.1 - - - +
355Z ALA* 1.3 57.3 + - - +
356Z THR 3.0 1.3 - - - -
357Z GLN* 2.6 31.0 + - + +
358Z VAL* 2.9 11.3 + - - +
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Residues in contact with ALA 355 (chain Z).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
153X GLY* 5.7 10.1 - - - -
333X LEU* 5.4 11.4 - - + -
351Z PHE 2.8 20.3 + - - +
352Z LEU* 3.9 8.3 - - + +
354Z GLN* 1.3 70.7 - - - +
356Z THR* 1.3 59.6 + - - +
358Z VAL* 3.0 8.4 + - - +
359Z ASN* 2.7 27.4 + - - +
----------------------------------------------------------
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Residues in contact with THR 356 (chain Z).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
352Z LEU 3.2 13.1 + - - -
353Z GLN* 3.4 6.5 - - - -
354Z GLN 3.0 0.6 - - - -
355Z ALA* 1.3 67.0 - - - +
357Z GLN* 1.3 56.3 + - - +
359Z ASN* 3.1 10.2 + - - +
360Z ALA* 2.8 28.1 + - - +
----------------------------------------------------------
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Residues in contact with GLN 357 (chain Z).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
353Z GLN 3.2 6.4 + - - +
354Z GLN* 2.6 22.2 + - + +
356Z THR* 1.3 69.9 - - - +
358Z VAL* 1.3 71.8 + - - +
360Z ALA* 3.2 6.3 + - - +
361Z TRP* 2.7 24.5 + - - +
----------------------------------------------------------
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Residues in contact with VAL 358 (chain Z).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
333X LEU* 5.5 7.9 - - + +
336X ARG* 4.8 18.4 - - + -
337X LEU* 5.8 4.0 - - + +
354Z GLN 2.9 7.7 + - - +
355Z ALA* 3.7 7.2 - - - +
357Z GLN* 1.3 86.9 - - - +
359Z ASN* 1.3 62.1 + - - +
361Z TRP* 3.2 6.3 + - + +
362Z ASP* 2.8 26.0 + - - +
----------------------------------------------------------
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Residues in contact with ASN 359 (chain Z).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
155X PHE* 5.8 10.5 - - + -
355Z ALA 2.7 13.3 + - - +
356Z THR* 3.4 15.9 - - - +
357Z GLN 3.0 0.4 - - - -
358Z VAL* 1.3 79.9 - - - +
360Z ALA* 1.3 52.5 + - - +
362Z ASP* 3.2 6.4 + - - +
363Z ARG* 2.7 33.5 + - - +
----------------------------------------------------------
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Residues in contact with ALA 360 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
356Z THR 2.8 15.9 + - - +
357Z GLN* 3.7 6.5 - - - +
359Z ASN* 1.3 75.6 - - - +
361Z TRP* 1.3 59.0 + - - +
363Z ARG* 2.7 25.7 - - + +
364Z THR* 2.8 11.6 + - - -
----------------------------------------------------------
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Residues in contact with TRP 361 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
340X GLN* 6.1 5.8 - - + -
277Y SER* 5.8 4.3 - - - -
280Y MET* 5.0 17.3 - - + +
357Z GLN 2.7 19.5 + - - +
358Z VAL* 3.6 8.3 - - + +
360Z ALA* 1.3 67.2 - - - +
362Z ASP* 1.4 57.4 + - - +
363Z ARG 2.7 3.6 - - - -
364Z THR* 2.6 27.5 + - - +
365Z LEU* 2.9 10.8 + - - +
----------------------------------------------------------
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Residues in contact with ASP 362 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
156X ASN 5.8 3.8 - - - +
358Z VAL 2.8 15.8 + - - +
359Z ASN* 3.5 6.5 - - - +
361Z TRP* 1.4 73.9 - - - +
363Z ARG* 1.3 68.4 + - - +
365Z LEU* 2.9 23.4 + - - +
366Z ILE* 3.4 7.6 + - - +
----------------------------------------------------------
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Residues in contact with ARG 363 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
359Z ASN 2.7 16.0 + - - +
360Z ALA* 2.7 24.0 - - - +
362Z ASP* 1.3 82.3 - - - +
364Z THR* 1.3 51.0 + - - +
366Z ILE* 3.7 2.4 + - - +
367Z GLU* 3.5 18.7 + - - +
----------------------------------------------------------
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Residues in contact with THR 364 (chain Z).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
280Y MET* 6.0 6.1 - - - -
360Z ALA 2.8 9.5 + - - -
361Z TRP* 2.6 16.3 + - - -
363Z ARG* 1.3 74.6 - - - +
365Z LEU* 1.4 62.4 + - - +
367Z GLU* 3.3 7.9 + - - +
368Z ASN* 2.9 23.4 + - - +
----------------------------------------------------------
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Residues in contact with LEU 365 (chain Z).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
343X MET* 5.9 7.4 - - + -
361Z TRP 2.9 8.8 + - - +
362Z ASP* 2.9 17.4 + - - +
364Z THR* 1.4 77.0 - - - +
366Z ILE* 1.3 49.2 + - - +
368Z ASN* 3.1 7.5 + - - +
369Z GLY* 2.7 30.5 + - - -
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Residues in contact with ILE 366 (chain Z).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
321X LYS* 5.9 6.7 - - + -
362Z ASP 3.4 6.5 + - - +
363Z ARG 4.5 4.3 - - - +
365Z LEU* 1.3 62.1 - - - +
367Z GLU* 1.3 69.7 + - - +
369Z GLY* 2.9 11.9 + - - +
370Z GLU* 3.2 14.9 + - - +
----------------------------------------------------------
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Residues in contact with GLU 367 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
363Z ARG 3.5 11.9 + - - +
364Z THR* 3.3 11.4 + - - +
365Z LEU 3.1 0.8 - - - -
366Z ILE* 1.3 83.6 - - - +
368Z ASN* 1.3 58.7 + - - +
370Z GLU* 4.0 9.6 + - - +
371Z LYS* 4.3 4.9 + - - +
----------------------------------------------------------
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Residues in contact with ASN 368 (chain Z).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
283Y VAL* 5.3 10.1 - - + -
284Y GLN* 5.1 17.0 - - + -
287Y ILE* 5.1 12.1 - - + +
364Z THR 2.9 13.3 + - - +
365Z LEU* 3.6 7.9 - - - +
367Z GLU* 1.3 75.8 - - - +
369Z GLY* 1.4 66.4 + - - +
370Z GLU 2.9 1.7 + - - -
371Z LYS* 3.1 9.4 + - - +
372Z ILE* 3.0 17.7 + - - +
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Residues in contact with GLY 369 (chain Z).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
365Z LEU 2.7 19.4 + - - -
366Z ILE* 2.9 6.7 + - - -
368Z ASN* 1.4 73.0 - - - +
370Z GLU* 1.4 50.8 + - - +
372Z ILE* 2.8 32.3 + - - +
373Z THR* 3.2 6.1 + - - -
----------------------------------------------------------
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Residues in contact with GLU 370 (chain Z).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
366Z ILE 3.2 12.5 + - - +
367Z GLU* 4.2 5.8 - - - +
368Z ASN 2.9 1.0 + - - -
369Z GLY* 1.4 68.9 - - - +
371Z LYS* 1.3 58.1 + - - +
372Z ILE 2.9 0.9 - - - -
373Z THR* 2.6 29.4 + - - +
374Z SER* 2.9 13.0 + - - -
----------------------------------------------------------
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Residues in contact with LYS 371 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
287Y ILE* 5.2 12.3 - - + +
291Y LYS* 6.2 4.3 - - + -
367Z GLU 4.3 5.1 + - - +
368Z ASN* 3.1 11.1 + - - +
370Z GLU* 1.3 76.3 - - - +
372Z ILE* 1.3 63.9 + - - +
374Z SER* 3.4 9.8 + - - +
375Z LEU* 2.9 22.7 + - - +
----------------------------------------------------------
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Residues in contact with ILE 372 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
350X ARG* 6.2 4.7 - - + -
351X LEU* 6.5 2.2 - - + -
287Y ILE* 5.3 7.9 - - + +
368Z ASN 3.0 7.6 + - - +
369Z GLY* 2.8 22.1 + - - +
370Z GLU 2.9 1.0 - - - -
371Z LYS* 1.3 78.0 - - - +
373Z THR* 1.4 48.2 + - - +
375Z LEU* 2.8 25.9 - - - +
376Z HIS* 2.9 15.5 + - - +
----------------------------------------------------------
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Residues in contact with THR 373 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
369Z GLY 3.2 4.5 + - - -
370Z GLU* 2.6 19.7 + - - -
372Z ILE* 1.4 67.9 - - - +
374Z SER* 1.3 64.1 + - - -
375Z LEU 2.8 4.5 - - - -
376Z HIS* 2.9 7.8 + - - +
377Z ARG* 2.8 23.6 + - - +
----------------------------------------------------------
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Residues in contact with SER 374 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
370Z GLU 2.9 9.3 + - - -
371Z LYS* 3.9 11.0 - - - -
373Z THR* 1.3 57.9 - - - +
375Z LEU* 1.4 52.8 + - - +
377Z ARG* 3.3 7.0 - - - +
378Z GLU* 2.8 36.9 + - - +
----------------------------------------------------------
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Residues in contact with LEU 375 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
354X ILE* 5.2 13.1 - - + +
290Y LEU* 6.1 5.4 - - + -
291Y LYS* 5.9 7.2 - - + -
371Z LYS 2.9 13.8 + - - +
372Z ILE* 2.8 20.6 - - - +
374Z SER* 1.4 73.9 - - - +
376Z HIS* 1.3 62.1 + - - -
377Z ARG 3.0 1.3 - - - -
378Z GLU* 3.4 2.2 + - - +
379Z VAL* 3.0 25.9 + - - +
----------------------------------------------------------
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Residues in contact with HIS 376 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
354X ILE* 5.6 4.5 - - - -
372Z ILE 2.9 13.8 + - - +
373Z THR* 2.9 9.1 + - - +
375Z LEU* 1.3 74.2 - - - +
377Z ARG* 1.3 65.3 + - - +
379Z VAL* 3.2 5.3 + - - +
380Z GLU* 3.2 23.0 + - - +
----------------------------------------------------------
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Residues in contact with ARG 377 (chain Z).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
373Z THR 2.8 11.7 + - - +
374Z SER* 3.3 11.2 - - - +
376Z HIS* 1.3 78.8 - - - +
378Z GLU* 1.3 61.3 - - - +
379Z VAL 3.1 1.0 + - - -
380Z GLU* 4.3 1.9 - - - +
381Z LYS* 3.2 19.1 + - - +
----------------------------------------------------------
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Residues in contact with GLU 378 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
294Y LEU* 6.2 4.3 - - + -
374Z SER 2.8 14.1 + - - +
375Z LEU* 4.6 1.6 - - - +
377Z ARG* 1.3 88.7 - - + +
379Z VAL* 1.4 53.5 + - - +
381Z LYS* 3.0 11.4 - - + +
382Z VAL* 2.9 26.2 + - - +
----------------------------------------------------------
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Residues in contact with VAL 379 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
354X ILE* 5.1 17.0 - - + +
357X ASP* 5.5 9.3 - - + +
358X ILE* 6.2 2.9 - - + +
294Y LEU* 6.1 7.5 - - + +
375Z LEU 3.0 19.0 + - - +
376Z HIS* 3.6 5.6 - - - +
377Z ARG 3.0 2.6 - - - -
378Z GLU* 1.4 70.7 - - - +
380Z GLU* 1.4 65.5 - - - +
381Z LYS 3.1 1.1 - - - -
382Z VAL* 3.0 20.4 + - - +
383Z LYS* 3.0 10.7 + - - +
----------------------------------------------------------
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Residues in contact with GLU 380 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
376Z HIS 3.2 12.6 + - - +
377Z ARG 4.4 2.0 - - - +
379Z VAL* 1.4 77.7 - - - +
381Z LYS* 1.4 50.0 + - - +
383Z LYS* 2.7 11.8 + - - +
384Z LEU* 2.7 33.4 + - - +
----------------------------------------------------------
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Residues in contact with LYS 381 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
377Z ARG 3.2 13.5 + - - +
378Z GLU* 3.0 21.1 - - + +
379Z VAL 3.1 0.2 - - - -
380Z GLU* 1.4 74.0 - - - +
382Z VAL* 1.4 56.8 + - - +
384Z LEU* 3.1 12.4 - - - +
385Z ASP* 3.1 17.3 + - - +
----------------------------------------------------------
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Residues in contact with VAL 382 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
294Y LEU 6.1 0.4 - - - +
297Y ALA* 5.4 12.6 - - + -
298Y ALA* 5.8 7.4 - - + -
378Z GLU 2.9 13.9 + - - +
379Z VAL* 3.1 14.6 - - - +
381Z LYS* 1.4 71.0 - - - +
383Z LYS* 1.4 55.8 + - - +
385Z ASP* 2.7 27.7 - - - +
386Z GLN* 2.8 10.2 + - - +
----------------------------------------------------------
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Residues in contact with LYS 383 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
357X ASP* 6.4 2.2 - - + -
379Z VAL 3.0 9.3 + - - +
380Z GLU* 2.7 18.6 + - - +
382Z VAL* 1.4 71.0 - - - +
384Z LEU* 1.3 70.6 + - - +
385Z ASP 2.8 0.4 - - - -
386Z GLN* 3.8 5.3 - - - +
387Z LYS* 3.2 17.7 + - - +
----------------------------------------------------------
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Residues in contact with LEU 384 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
380Z GLU 2.7 10.8 + - - +
381Z LYS* 3.1 16.8 - - - +
383Z LYS* 1.3 81.0 - - - +
385Z ASP* 1.4 56.4 + - - +
387Z LYS* 3.7 0.5 - - - -
388Z ARG* 3.0 28.8 + - - +
----------------------------------------------------------
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Residues in contact with ASP 385 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
301Y ILE* 4.7 17.0 - - + -
381Z LYS 3.1 4.0 + - - +
382Z VAL* 2.7 26.7 + - - +
383Z LYS 2.8 0.8 - - - -
384Z LEU* 1.4 75.4 - - - +
386Z GLN* 1.3 67.9 - - - +
387Z LYS 3.0 1.3 - - - -
388Z ARG* 3.2 4.5 + - - +
389Z LEU* 3.1 21.7 + - - +
----------------------------------------------------------
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Residues in contact with GLN 386 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
361X LEU* 4.9 19.3 - - + +
364X ASN* 5.8 7.0 - - + -
365X GLN* 6.5 0.2 - - + -
301Y ILE* 6.0 4.5 - - + -
382Z VAL 2.8 9.0 + - - +
383Z LYS* 3.6 4.4 + - - +
385Z ASP* 1.3 86.0 - - - +
387Z LYS* 1.3 68.2 - - + +
389Z LEU* 3.1 5.5 + - - +
390Z ASP* 2.9 24.2 + - + +
----------------------------------------------------------
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Residues in contact with LYS 387 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
383Z LYS 3.2 15.0 + - - +
384Z LEU 3.7 2.0 - - - -
385Z ASP 3.0 0.6 - - - -
386Z GLN* 1.3 78.6 - - + +
388Z ARG* 1.3 73.8 - - - +
390Z ASP* 3.7 12.1 - - + -
391Z GLN* 3.1 18.7 + - - +
----------------------------------------------------------
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Residues in contact with ARG 388 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
384Z LEU 3.0 15.8 + - - +
385Z ASP* 3.9 3.6 - - - +
386Z GLN 2.9 0.4 - - - -
387Z LYS* 1.3 88.9 - - - +
389Z LEU* 1.4 61.3 + - - +
390Z ASP 2.9 1.7 + - - -
391Z GLN* 3.4 3.0 + - - +
392Z GLU* 3.1 18.8 + - - +
----------------------------------------------------------
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Residues in contact with LEU 389 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
304Y ASN* 5.6 13.2 - - + +
305Y THR* 6.1 2.5 - - - +
308Y ILE* 5.9 5.2 - - + -
385Z ASP 3.1 15.4 + - - +
386Z GLN* 4.0 4.7 - - - +
388Z ARG* 1.4 73.6 - - - +
390Z ASP* 1.4 55.5 + - - +
392Z GLU* 3.0 26.4 - - + +
393Z LEU* 3.0 15.2 + - - +
----------------------------------------------------------
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Residues in contact with ASP 390 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
386Z GLN* 2.9 17.1 + - + +
387Z LYS* 3.5 15.0 - - + +
388Z ARG 2.9 0.4 - - - -
389Z LEU* 1.4 73.4 - - - +
391Z GLN* 1.3 69.9 + - - +
392Z GLU 3.1 1.0 + - - -
393Z LEU* 3.6 12.1 + - - +
394Z ASP* 3.6 7.1 + - - +
----------------------------------------------------------
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Residues in contact with GLN 391 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
387Z LYS 3.1 13.0 + - - +
388Z ARG 4.3 2.0 - - - +
390Z ASP* 1.3 83.9 - - - +
392Z GLU* 1.5 45.3 + - - +
393Z LEU 3.3 0.4 - - - -
394Z ASP* 2.8 32.7 + - + +
395Z PHE* 3.1 9.0 + - - +
----------------------------------------------------------
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Residues in contact with GLU 392 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
308Y ILE* 5.1 14.1 - - + -
388Z ARG 3.1 9.7 + - - +
389Z LEU* 3.0 24.8 + - + +
390Z ASP 3.1 1.0 - - - -
391Z GLN* 1.5 65.3 - - - +
393Z LEU* 1.3 58.6 - - - +
394Z ASP 3.1 1.3 - - - -
395Z PHE* 3.1 5.4 + - - +
396Z ILE* 2.8 31.1 + - - +
----------------------------------------------------------
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Residues in contact with LEU 393 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
371X LYS* 5.0 18.1 - - + +
372X ILE* 6.6 0.2 - - - -
308Y ILE* 6.5 0.4 - - - -
389Z LEU 3.0 11.4 + - - +
390Z ASP* 3.9 8.1 - - - +
391Z GLN 3.3 0.4 - - - -
392Z GLU* 1.3 79.8 - - + +
394Z ASP* 1.3 58.0 + - - +
395Z PHE 3.1 0.2 - - - -
396Z ILE* 4.5 5.1 - - - +
397Z LEU* 2.9 24.8 + - - +
----------------------------------------------------------
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Residues in contact with ASP 394 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
390Z ASP 3.6 4.5 + - - +
391Z GLN* 2.8 19.3 + - + +
393Z LEU* 1.3 76.5 - - - +
395Z PHE* 1.3 69.8 - - + +
397Z LEU* 3.1 7.1 - - - +
398Z SER* 2.8 27.0 + - - -
----------------------------------------------------------
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Residues in contact with PHE 395 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
391Z GLN 3.1 9.1 + - - +
392Z GLU* 3.1 7.8 + - - +
393Z LEU 3.1 0.2 - - - -
394Z ASP* 1.3 89.2 - - + +
396Z ILE* 1.4 53.7 + - - +
398Z SER* 2.7 26.5 + - - -
399Z GLN* 3.0 10.7 + - - +
----------------------------------------------------------
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Residues in contact with ILE 396 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
375X TYR* 6.1 6.1 - - + -
308Y ILE* 6.5 0.7 - - + -
311Y LEU* 5.1 20.6 - - + +
312Y LYS* 5.8 2.9 - - - +
315Y THR* 5.3 7.9 - - - -
392Z GLU 2.8 17.2 + - - +
393Z LEU* 4.6 4.7 - - - -
395Z PHE* 1.4 71.8 - - - +
397Z LEU* 1.3 62.3 + - - +
399Z GLN* 3.3 17.9 + - - +
400Z GLN* 3.4 10.6 + - - +
----------------------------------------------------------
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Residues in contact with LEU 397 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
375X TYR* 6.1 5.2 - - - -
393Z LEU 2.9 22.4 + - - +
394Z ASP* 3.1 11.4 - - - +
396Z ILE* 1.3 79.8 - - - +
398Z SER* 1.4 54.3 + - - +
400Z GLN* 3.1 27.5 + - - +
401Z LYS* 3.3 6.1 + - - +
----------------------------------------------------------
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Residues in contact with SER 398 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
394Z ASP 2.8 11.4 + - - -
395Z PHE* 2.7 19.1 + - - -
397Z LEU* 1.4 66.6 - - - +
399Z GLN* 1.3 64.1 + - - -
400Z GLN 3.0 1.6 - - - -
401Z LYS* 3.0 18.0 + - - +
402Z GLU* 3.1 15.2 + - - +
----------------------------------------------------------
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Residues in contact with GLN 399 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
315Y THR* 4.7 16.4 - - - -
319Y LEU* 6.4 2.0 - - + -
395Z PHE 3.0 10.0 + - - +
396Z ILE* 3.5 14.6 - - - +
397Z LEU 3.2 0.2 - - - -
398Z SER* 1.3 76.5 - - - +
400Z GLN* 1.3 51.6 + - - +
402Z GLU* 4.3 3.0 - - - +
403Z LEU* 2.8 40.4 + - + +
----------------------------------------------------------
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Residues in contact with GLN 400 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
375X TYR* 6.1 2.9 - - - +
378X LYS* 5.3 12.8 - - + -
396Z ILE 3.4 6.0 + - - +
397Z LEU* 3.1 17.0 + - - +
398Z SER 3.0 0.6 - - - -
399Z GLN* 1.3 77.2 - - - +
401Z LYS* 1.4 59.7 + - - +
403Z LEU* 4.1 4.3 - - - -
404Z GLU* 3.5 17.3 + - - +
----------------------------------------------------------
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Residues in contact with LYS 401 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
397Z LEU 3.3 7.7 + - - +
398Z SER* 3.0 10.7 + - - +
400Z GLN* 1.4 72.9 - - - +
402Z GLU* 1.4 62.4 + - - +
403Z LEU 3.4 0.2 - - - -
404Z GLU* 3.4 6.0 + - - +
405Z ASP* 3.2 21.3 + - - +
----------------------------------------------------------
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Residues in contact with GLU 402 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
398Z SER 3.1 13.2 + - - +
399Z GLN* 4.3 2.9 - - - +
401Z LYS* 1.4 70.3 - - - +
403Z LEU* 1.3 67.8 + - - +
404Z GLU 2.9 2.7 + - - -
405Z ASP* 4.3 3.5 - - - +
406Z LEU* 3.3 24.8 + - - +
----------------------------------------------------------
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Residues in contact with LEU 403 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
319Y LEU* 5.1 18.6 - - + +
322Y ALA* 5.1 10.4 - - + +
399Z GLN* 2.8 23.4 + - + +
400Z GLN* 4.7 2.9 - - - -
402Z GLU* 1.3 78.4 - - + +
404Z GLU* 1.3 58.7 + - - +
406Z LEU* 4.0 3.6 - - - +
407Z LEU* 3.5 17.3 + - - +
----------------------------------------------------------
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Residues in contact with GLU 404 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
400Z GLN 3.5 15.2 + - - +
401Z LYS* 3.4 11.3 + - - +
402Z GLU 2.9 1.0 - - - -
403Z LEU* 1.3 78.4 - - - +
405Z ASP* 1.4 65.1 + - - +
406Z LEU 2.8 1.8 - - - -
407Z LEU* 2.8 14.6 + - - +
408Z SER* 3.6 2.6 + - - -
----------------------------------------------------------
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Residues in contact with ASP 405 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
401Z LYS 3.2 14.9 + - - +
402Z GLU* 4.3 4.9 - - - +
404Z GLU* 1.4 69.9 - - - +
406Z LEU* 1.3 63.8 - - + +
408Z SER* 2.6 35.9 + - - +
409Z PRO* 2.8 1.7 - - + -
----------------------------------------------------------
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Residues in contact with LEU 406 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
402Z GLU 3.3 15.0 + - - +
403Z LEU* 4.0 4.5 - - - +
404Z GLU 2.8 0.6 - - - -
405Z ASP* 1.3 89.2 - - + +
407Z LEU* 1.3 65.4 + - - -
409Z PRO 3.1 12.6 - - - -
410Z LEU* 4.1 7.3 - - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il