Contacts of the helix formed by residues 1593 - 1620 (chain C) in PDB entry 5JCZ
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with LEU1593 (chain C).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1515C VAL* 4.0 10.8 - - + -
1527C VAL* 4.0 10.3 - - + -
1531C LEU* 4.0 29.2 - - + -
1566C LEU* 3.8 21.5 - - + -
1588C LEU* 3.7 25.3 - - + +
1591C PHE* 3.7 27.0 + - + +
1592C ASP* 1.3 78.5 + - - +
1594C ALA* 1.3 63.8 + - - +
1595C GLU 3.2 3.4 - - - -
1596C TYR* 3.1 21.4 + - + -
1597C ARG* 2.9 38.3 + - + +
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Residues in contact with ALA1594 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1572C GLU* 4.7 1.8 - - - +
1592C ASP* 3.2 24.9 + - - +
1593C LEU* 1.3 77.2 - - - +
1595C GLU* 1.3 64.0 + - + +
1597C ARG* 3.3 29.7 + - - +
1598C GLN* 3.2 20.4 + - - +
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Residues in contact with GLU1595 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1592C ASP 5.1 0.8 + - - -
1593C LEU 3.2 0.4 - - - -
1594C ALA* 1.3 76.3 - - + +
1596C TYR* 1.3 72.7 + - + +
1598C GLN* 3.3 9.0 + - - +
1599C VAL* 3.2 25.8 + - - +
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Residues in contact with TYR1596 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1527C VAL* 5.7 1.6 - - + -
1528C ARG* 3.5 31.4 - - + +
1531C LEU* 3.7 47.6 - - + -
1532C THR* 4.8 10.8 - - - -
1535C ILE* 5.0 9.6 - - + +
1566C LEU* 5.8 2.0 - - + -
1592C ASP 5.1 2.0 - - - -
1593C LEU* 3.1 30.1 + - + +
1595C GLU* 1.3 82.2 - - + +
1597C ARG* 1.3 61.2 + - + +
1599C VAL* 3.3 11.1 + - + +
1600C LEU* 3.0 37.2 + - + +
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Residues in contact with ARG1597 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1563C LEU* 3.7 19.5 - - + +
1566C LEU* 3.9 37.8 + - + -
1567C LYS* 3.9 23.2 - - - +
1570C SER* 3.8 17.5 - - - -
1572C GLU* 3.0 35.1 + - - -
1575C PHE* 3.9 14.1 - - - -
1592C ASP* 4.4 2.6 + - - -
1593C LEU* 2.9 24.5 + - + +
1594C ALA* 3.4 36.6 + - - +
1595C GLU 3.2 0.2 - - - -
1596C TYR* 1.3 78.8 - - - +
1598C GLN* 1.3 55.9 + - - +
1600C LEU* 3.5 3.3 + - - -
1601C SER* 3.0 28.1 + - - -
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Residues in contact with GLN1598 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1594C ALA 3.2 12.3 + - - +
1595C GLU* 3.5 12.1 - - - +
1596C TYR 3.2 0.4 - - - -
1597C ARG* 1.3 74.9 - - - +
1599C VAL* 1.3 65.6 + - + +
1601C SER* 3.3 11.5 + - - -
1602C ASP* 3.0 54.0 + - - +
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Residues in contact with VAL1599 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1535C ILE* 3.7 32.5 - - + -
1539C LYS* 5.7 4.5 - - - +
1595C GLU* 3.2 15.7 + - + +
1596C TYR* 3.5 13.0 - - + +
1598C GLN* 1.3 78.5 - - + +
1600C LEU* 1.3 56.4 + - - +
1602C ASP* 3.3 10.2 + - - +
1603C LEU* 2.9 26.1 + - + +
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Residues in contact with LEU1600 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1531C LEU* 5.6 2.0 - - + -
1534C THR* 5.7 0.7 - - + -
1535C ILE* 3.9 28.9 - - + -
1538C ILE* 5.3 5.4 - - + -
1559C THR* 4.0 23.7 - - + +
1562C PHE* 3.6 26.2 - - + -
1563C LEU* 4.4 15.7 - - + +
1566C LEU* 3.5 32.3 - - + -
1596C TYR* 3.0 21.5 + - + +
1597C ARG* 3.8 5.6 - - - +
1599C VAL* 1.3 75.1 - - - +
1601C SER* 1.3 60.4 + - - +
1603C LEU* 3.2 12.3 + - + +
1604C ALA* 2.9 28.9 + - - +
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Residues in contact with SER1601 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1563C LEU* 4.1 17.7 - - - +
1597C ARG 3.0 18.8 + - - -
1598C GLN* 3.3 17.8 + - - -
1600C LEU* 1.3 77.2 - - - +
1602C ASP* 1.3 62.9 + - - +
1604C ALA* 3.4 7.0 + - - +
1605C ILE* 3.2 29.2 + - - +
1827C PHE* 5.1 5.4 - - - +
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Residues in contact with ASP1602 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1598C GLN* 3.0 44.4 + - - +
1599C VAL* 3.6 10.2 - - - +
1601C SER* 1.3 75.0 + - - +
1603C LEU* 1.3 65.5 + - - +
1605C ILE* 3.3 19.0 + - - +
1606C GLN* 3.2 26.1 + - + +
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Residues in contact with LEU1603 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1535C ILE* 4.5 17.5 - - + +
1538C ILE* 4.1 27.6 - - + -
1539C LYS* 3.8 33.0 - - + -
1542C LEU* 5.4 1.8 - - + -
1559C THR* 4.4 5.2 - - + -
1599C VAL* 2.9 14.5 + - + +
1600C LEU* 3.4 27.1 - - + +
1602C ASP* 1.3 75.6 - - - +
1604C ALA* 1.3 59.9 + - - +
1606C GLN* 3.1 13.8 + - + +
1607C ILE* 2.8 48.9 + - + +
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Residues in contact with ALA1604 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1556C LEU* 3.6 6.4 - - + +
1559C THR* 4.3 13.7 - - + +
1560C CYS* 4.4 9.6 - - - +
1563C LEU* 5.6 4.3 - - + -
1600C LEU 2.9 13.8 + - - +
1601C SER* 3.5 12.8 - - - +
1603C LEU* 1.3 77.0 - - - +
1605C ILE* 1.3 57.1 + - - +
1607C ILE* 3.3 7.1 + - - -
1608C TYR* 2.9 29.5 + - - +
1827C PHE* 3.5 26.9 - - + -
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Residues in contact with ILE1605 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1601C SER* 3.2 19.9 + - - +
1602C ASP* 3.4 21.1 - - - +
1603C LEU 3.2 0.2 - - - -
1604C ALA* 1.3 76.7 - - - +
1606C GLN* 1.3 63.7 + - - +
1608C TYR* 3.3 4.3 + - - +
1609C GLN* 3.0 48.3 + - + +
1825C VAL* 5.1 9.2 - - + -
1827C PHE* 3.8 23.1 - - + -
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Residues in contact with GLN1606 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1602C ASP* 3.2 12.9 + - + +
1603C LEU* 3.1 16.7 + - + +
1605C ILE* 1.3 82.8 - - - +
1607C ILE* 1.3 58.5 + - + +
1609C GLN* 3.2 33.3 + - - +
1610C GLN* 3.0 28.2 + - - +
1613C ARG* 4.8 5.4 + - - -
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Residues in contact with ILE1607 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1538C ILE* 4.1 3.8 - - + -
1542C LEU* 3.6 29.8 - - + -
1552C VAL* 3.6 20.6 - - + +
1555C TRP 3.9 4.9 - - - +
1556C LEU* 3.6 28.0 - - + +
1559C THR* 3.5 30.3 - - + +
1603C LEU* 2.8 39.8 + - + +
1604C ALA* 3.7 4.9 - - - +
1606C GLN* 1.3 73.0 - - + +
1608C TYR* 1.3 60.8 + - - +
1610C GLN* 3.2 9.7 + - - +
1611C LEU* 2.9 23.7 + - - +
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Residues in contact with TYR1608 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1556C LEU* 4.0 25.1 - - + +
1604C ALA 2.9 17.4 + - - +
1605C ILE* 3.3 6.5 + - - +
1607C ILE* 1.3 76.3 - - - +
1609C GLN* 1.3 68.4 + - + +
1611C LEU* 3.1 5.9 + - + +
1612C VAL* 3.0 42.4 + - + +
1682C LEU* 4.5 12.3 - - + -
1685C GLN* 3.5 28.3 + - + +
1686C VAL* 3.6 25.5 + - + -
1689C GLN* 4.4 6.2 + - - +
1822C ILE* 4.5 12.6 - - + -
1823C PHE* 4.5 5.4 + - - +
1825C VAL* 3.8 42.9 - - + +
1827C PHE* 4.1 10.1 - - + -
----------------------------------------------------------
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Residues in contact with GLN1609 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1605C ILE* 3.0 31.3 + - + +
1606C GLN* 3.2 39.2 + - - +
1607C ILE 3.3 0.2 - - - -
1608C TYR* 1.3 85.1 - - + +
1610C GLN* 1.3 60.7 + - - +
1612C VAL* 3.5 6.8 + - - +
1613C ARG* 3.1 43.1 + - - +
1822C ILE* 4.7 18.8 - - + +
1825C VAL* 6.2 0.7 - - + -
----------------------------------------------------------
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Residues in contact with GLN1610 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1542C LEU* 3.0 48.1 + - - +
1546C GLY* 3.1 29.3 + - - +
1552C VAL* 3.8 15.8 - - + +
1606C GLN 3.0 13.0 + - - +
1607C ILE* 3.5 10.2 - - - +
1608C TYR 3.2 0.2 - - - -
1609C GLN* 1.3 74.4 - - - +
1611C LEU* 1.3 65.0 + - - +
1613C ARG* 3.3 29.6 + - + +
1614C VAL* 3.0 30.3 + - + +
----------------------------------------------------------
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Residues in contact with LEU1611 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1549C PHE* 3.5 36.7 - - + +
1552C VAL* 3.7 13.2 - - + +
1553C SER* 3.7 28.0 - - - +
1556C LEU* 4.0 20.6 - - + -
1607C ILE 2.9 13.1 + - - +
1608C TYR* 3.3 11.2 - - + +
1610C GLN* 1.3 76.6 - - - +
1612C VAL* 1.3 62.8 + - + +
1614C VAL* 3.3 5.5 + - + +
1615C LEU* 3.0 25.3 + - + +
1673C MET* 4.5 2.9 - - - -
1678C MET* 4.3 9.9 - - + -
1686C VAL* 3.9 29.6 - - + -
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Residues in contact with VAL1612 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1608C TYR* 3.0 43.0 + - + +
1609C GLN 3.7 6.7 - - - +
1610C GLN 3.3 0.2 - - - -
1611C LEU* 1.3 73.7 - - + +
1613C ARG* 1.3 61.5 + - - +
1615C LEU* 3.3 15.5 - - + +
1616C GLU* 2.9 30.9 + - + +
1686C VAL* 5.6 2.5 - - + -
1689C GLN* 3.7 33.0 - - + +
1693C ILE* 5.0 3.4 - - + -
1822C ILE* 3.9 29.4 - - + -
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Residues in contact with ARG1613 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1606C GLN* 4.8 4.6 + - - -
1609C GLN* 3.1 38.2 + - - +
1610C GLN* 3.5 39.0 + - + +
1611C LEU 3.3 0.2 - - - -
1612C VAL* 1.3 77.1 - - - +
1614C VAL* 1.3 57.3 + - + +
1616C GLU* 3.4 7.4 + - - +
1617C ASN* 3.0 30.5 + - - +
1822C ILE* 5.1 10.3 - - + +
----------------------------------------------------------
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Residues in contact with VAL1614 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1546C GLY 3.3 26.7 - - - +
1547C ASP* 3.7 28.0 - - - +
1549C PHE* 3.9 29.4 - - + +
1552C VAL* 4.4 7.4 - - + -
1610C GLN* 3.0 24.4 + - + +
1611C LEU* 3.6 5.6 - - - +
1613C ARG* 1.3 78.6 - - + +
1615C LEU* 1.3 63.3 + - - +
1617C ASN* 3.4 7.4 + - - +
1618C ILE* 3.2 29.3 + - + +
----------------------------------------------------------
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Residues in contact with LEU1615 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1549C PHE* 4.1 12.6 - - + -
1611C LEU* 3.0 21.7 + - + +
1612C VAL* 3.3 25.1 - - + +
1614C VAL* 1.3 74.4 - - - +
1616C GLU* 1.3 61.1 + - - +
1618C ILE* 3.2 3.1 + - - +
1619C LEU* 2.8 36.7 + - + +
1669C PHE* 3.8 28.0 - - + -
1686C VAL* 3.8 29.6 - - + +
1689C GLN* 5.0 1.3 - - + -
1690C MET* 3.6 25.1 - - + +
1693C ILE* 3.7 23.1 - - + -
----------------------------------------------------------
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Residues in contact with GLU1616 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1612C VAL* 2.9 21.8 + - + +
1613C ARG* 3.8 7.7 - - - +
1615C LEU* 1.3 81.6 - - - +
1617C ASN* 1.3 63.4 + - - +
1619C LEU* 4.4 2.7 - - - +
1620C GLN* 2.9 52.4 + - - +
1693C ILE* 3.7 31.4 - - + +
1697C ILE* 5.1 2.9 - - - +
1819C ALA* 4.9 5.6 - - - +
1820C LYS* 2.6 45.3 + - + +
----------------------------------------------------------
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Residues in contact with ASN1617 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1613C ARG 3.0 18.1 + - - +
1614C VAL* 3.6 7.6 - - - +
1616C GLU* 1.3 83.7 + - - +
1618C ILE* 1.3 60.8 + - - +
1620C GLN* 5.1 1.5 - - - +
1621C PRO* 3.3 21.8 - - - +
----------------------------------------------------------
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Residues in contact with ILE1618 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1547C ASP 5.4 3.1 - - - +
1549C PHE* 4.8 4.7 - - + -
1614C VAL* 3.2 27.4 - - + +
1615C LEU 3.2 6.6 + - - +
1616C GLU 3.1 0.2 - - - -
1617C ASN* 1.3 84.1 - - - +
1619C LEU* 1.3 63.3 + - - +
1621C PRO* 3.4 9.0 - - - +
1622C MET* 3.5 15.5 - - - +
1665C GLN* 3.6 35.4 - - + +
1669C PHE* 3.8 22.7 - - + -
----------------------------------------------------------
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Residues in contact with LEU1619 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1615C LEU* 2.8 25.6 + - + +
1616C GLU* 4.2 2.9 - - - +
1618C ILE* 1.3 78.0 - - - +
1620C GLN* 1.3 66.6 + - - +
1622C MET* 2.9 26.5 + - + +
1623C ILE* 3.3 15.9 - - + +
1662C ILE* 4.5 11.9 - - + -
1665C GLN* 4.1 16.8 - - + -
1666C LEU* 3.9 25.4 - - + -
1669C PHE* 3.9 9.4 - - + -
1690C MET* 3.9 42.0 - - + +
1693C ILE* 4.7 10.1 - - + -
1694C ILE* 4.8 7.2 - - + -
----------------------------------------------------------
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Residues in contact with GLN1620 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1616C GLU* 2.9 38.9 + - + +
1617C ASN* 5.0 1.2 - - - +
1619C LEU* 1.3 77.3 - - - +
1621C PRO* 1.3 81.1 - - + +
1622C MET 3.1 1.2 + - - -
1623C ILE* 3.5 12.6 + - - +
1624C VAL* 4.8 3.9 + - - +
1693C ILE* 5.0 0.6 - - - +
1697C ILE* 3.7 31.8 - - + +
1820C LYS* 4.6 7.2 - - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il