Contacts of the helix formed by residues 1593 - 1628 (chain B) in PDB entry 5JCZ
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with LEU1593 (chain B).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1515B VAL* 4.1 15.5 - - + -
1527B VAL* 3.8 15.9 - - + -
1531B LEU* 3.7 33.0 - - + -
1566B LEU* 4.2 15.7 - - + -
1588B LEU* 3.8 29.4 - - + -
1591B PHE* 3.7 14.2 + - + +
1592B ASP* 1.3 77.1 + - - +
1594B ALA* 1.3 62.9 + - - +
1595B GLU 3.2 3.1 - - - -
1596B TYR* 3.1 24.2 + - + -
1597B ARG* 3.0 37.4 + - + +
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Residues in contact with ALA1594 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1572B GLU* 4.8 1.1 - - - +
1592B ASP* 3.2 22.5 + - - +
1593B LEU* 1.3 75.3 - - - +
1595B GLU* 1.3 62.2 + - - +
1597B ARG* 3.3 30.2 + - - +
1598B GLN* 3.3 19.6 + - - +
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Residues in contact with GLU1595 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1592B ASP 4.9 1.9 + - - +
1593B LEU 3.2 0.6 - - - -
1594B ALA* 1.3 79.0 - - - +
1596B TYR* 1.3 71.6 - - + +
1598B GLN* 3.4 9.5 + - - +
1599B VAL* 3.3 23.8 + - - +
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Residues in contact with TYR1596 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1527B VAL* 5.6 0.7 - - + -
1528B ARG* 3.2 33.7 + - + +
1531B LEU* 3.7 40.2 - - + -
1532B THR* 4.9 11.0 + - - -
1535B ILE* 4.8 13.2 - - + +
1566B LEU* 5.6 3.6 - - + -
1592B ASP 5.3 1.3 - - - -
1593B LEU* 3.1 38.4 + - + +
1595B GLU* 1.3 83.6 - - + +
1597B ARG* 1.3 65.1 + - - +
1599B VAL* 3.3 11.5 + - + +
1600B LEU* 3.2 28.3 + - + +
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Residues in contact with ARG1597 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1563B LEU* 3.6 18.9 - - + +
1566B LEU* 4.0 29.9 + - + -
1567B LYS* 3.8 30.5 - - - +
1570B SER* 3.8 16.9 - - - -
1572B GLU* 3.0 35.1 + - - -
1575B PHE* 4.2 11.8 - - - -
1592B ASP* 4.5 2.6 + - - -
1593B LEU* 3.0 24.0 + - + +
1594B ALA* 3.6 37.3 - - - +
1595B GLU 3.3 0.4 - - - -
1596B TYR* 1.3 75.8 - - - +
1598B GLN* 1.3 59.1 + - - +
1600B LEU* 3.5 2.4 + - - -
1601B SER* 3.0 28.1 + - - -
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Residues in contact with GLN1598 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1594B ALA 3.3 8.7 + - - +
1595B GLU* 3.6 12.3 - - - +
1596B TYR 3.2 0.6 - - - -
1597B ARG* 1.3 78.2 - - - +
1599B VAL* 1.3 65.0 + - + +
1601B SER* 3.4 11.2 + - - -
1602B ASP* 3.1 61.7 + - - +
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Residues in contact with VAL1599 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1535B ILE* 3.7 35.0 - - + -
1539B LYS* 5.7 5.2 - - - +
1595B GLU 3.3 16.2 - - - +
1596B TYR* 3.5 14.1 - - + +
1597B ARG 3.3 0.2 - - - -
1598B GLN* 1.3 78.2 - - + +
1600B LEU* 1.3 57.3 + - - +
1602B ASP* 3.4 7.5 + - - +
1603B LEU* 2.9 26.0 + - + +
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Residues in contact with LEU1600 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1531B LEU* 5.8 1.3 - - + -
1534B THR* 5.7 0.2 - - + -
1535B ILE* 3.9 28.3 - - + -
1538B ILE* 5.1 6.1 - - + -
1559B THR* 4.1 17.8 - - + +
1562B PHE* 3.5 39.3 - - + -
1563B LEU* 4.2 17.9 - - + -
1566B LEU* 3.6 17.7 - - + -
1596B TYR* 3.2 16.1 + - + +
1597B ARG 3.9 4.0 - - - +
1598B GLN 3.3 0.2 - - - -
1599B VAL* 1.3 76.6 - - - +
1601B SER* 1.3 55.8 + - - +
1603B LEU* 3.3 20.0 - - + +
1604B ALA* 2.7 35.4 + - - +
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Residues in contact with SER1601 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1563B LEU* 4.1 17.8 - - - +
1567B LYS* 6.2 0.7 - - - -
1597B ARG 3.0 19.2 + - - -
1598B GLN* 3.5 18.1 + - - -
1599B VAL 3.3 0.2 - - - -
1600B LEU* 1.3 76.5 - - - +
1602B ASP* 1.3 62.4 + - - +
1604B ALA* 3.3 7.4 + - - +
1605B ILE* 3.2 28.5 + - - +
1827B PHE* 4.8 7.9 - - - +
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Residues in contact with ASP1602 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1598B GLN* 3.1 44.0 + - - +
1599B VAL* 3.8 5.7 - - - +
1601B SER* 1.3 73.9 + - - +
1603B LEU* 1.3 66.1 + - - +
1605B ILE* 3.3 21.4 + - + +
1606B GLN* 3.3 26.0 + - - +
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Residues in contact with LEU1603 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1535B ILE* 4.1 19.5 - - + +
1538B ILE* 4.3 22.4 - - + -
1539B LYS* 3.9 31.6 - - + -
1542B LEU* 5.3 1.8 - - + -
1559B THR* 4.2 8.7 - - + -
1599B VAL* 2.9 15.4 + - + +
1600B LEU* 3.1 30.5 + - + +
1602B ASP* 1.3 78.8 - - - +
1604B ALA* 1.3 62.2 + - - +
1606B GLN* 3.1 12.9 + - + +
1607B ILE* 3.1 40.2 + - + +
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Residues in contact with ALA1604 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1556B LEU* 3.6 5.8 - - + +
1559B THR* 4.5 7.4 - - + -
1560B CYS* 4.4 13.0 - - - +
1563B LEU* 5.5 4.7 - - + -
1600B LEU 2.7 19.7 + - - +
1601B SER* 3.5 9.6 - - - +
1603B LEU* 1.3 74.2 - - - +
1605B ILE* 1.3 61.7 + - - +
1607B ILE* 3.3 11.5 + - - -
1608B TYR 3.1 18.5 + - - -
1827B PHE* 3.4 30.9 - - + -
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Residues in contact with ILE1605 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1601B SER* 3.2 19.3 + - - +
1602B ASP* 3.4 25.4 - - - +
1603B LEU 3.2 0.4 - - - -
1604B ALA* 1.3 77.6 - - - +
1606B GLN* 1.3 62.8 + - - +
1608B TYR* 3.4 4.4 + - - +
1609B GLN* 3.0 47.8 + - - +
1825B VAL* 4.8 10.3 - - + +
1827B PHE* 3.7 23.3 - - + -
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Residues in contact with GLN1606 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1602B ASP 3.5 14.7 + - - +
1603B LEU* 3.1 16.4 + - + +
1605B ILE* 1.3 81.0 - - - +
1607B ILE* 1.3 63.5 + - + +
1609B GLN* 3.4 22.2 + - - +
1610B GLN* 3.1 23.3 + - - +
1613B ARG* 4.6 12.3 + - - -
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Residues in contact with ILE1607 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1538B ILE* 4.3 1.8 - - + -
1542B LEU* 3.6 31.6 - - + -
1552B VAL* 3.6 20.9 - - + +
1555B TRP 3.9 5.4 - - - +
1556B LEU* 3.6 27.1 - - + +
1559B THR* 3.6 32.1 - - + +
1603B LEU* 3.1 29.3 + - + +
1604B ALA* 3.7 7.9 - - - +
1605B ILE 3.3 0.2 - - - -
1606B GLN* 1.3 75.2 - - - +
1608B TYR* 1.3 60.0 + - - +
1610B GLN* 3.1 10.4 + - - +
1611B LEU* 2.9 24.4 + - - +
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Residues in contact with TYR1608 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1556B LEU* 3.9 22.4 - - + +
1604B ALA 3.1 16.3 + - - +
1605B ILE 3.7 3.6 - - - +
1606B GLN 3.4 0.2 - - - -
1607B ILE* 1.3 75.6 - - - +
1609B GLN* 1.3 69.7 + - - +
1611B LEU* 3.1 8.3 + - + +
1612B VAL* 3.1 45.2 + - + +
1682B LEU* 4.4 11.0 - - + -
1685B GLN* 3.4 29.6 + - + +
1686B VAL* 3.5 27.2 + - + -
1689B GLN* 4.3 5.7 + - - +
1822B ILE* 4.5 5.2 - - + -
1823B PHE* 4.4 12.5 + - - +
1825B VAL* 3.5 42.7 - - + +
1827B PHE* 4.2 9.2 - - + -
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Residues in contact with GLN1609 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1605B ILE* 3.0 35.4 + - - +
1606B GLN* 3.5 26.1 + - - +
1607B ILE 3.2 0.2 - - - -
1608B TYR* 1.3 82.6 - - - +
1610B GLN* 1.3 62.1 + - - +
1612B VAL* 3.4 6.6 + - - +
1613B ARG* 3.2 46.6 + - - +
1822B ILE* 4.3 28.7 - - + +
1824B PRO* 6.2 0.2 - - - +
1825B VAL* 5.2 2.4 - - - +
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Residues in contact with GLN1610 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1542B LEU* 2.9 49.2 + - - +
1546B GLY* 3.1 30.4 + - - +
1552B VAL* 3.9 15.2 - - + +
1606B GLN 3.1 14.2 + - - +
1607B ILE* 3.1 10.1 + - - +
1609B GLN* 1.3 75.6 - - - +
1611B LEU* 1.3 64.0 + - - +
1613B ARG* 3.3 24.4 + - - +
1614B VAL* 3.1 29.5 + - + +
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Residues in contact with LEU1611 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1549B PHE* 3.5 33.0 - - + -
1552B VAL* 3.7 23.7 - - + +
1553B SER* 3.8 17.0 - - - +
1556B LEU* 3.9 21.1 - - + -
1607B ILE 2.9 13.1 + - - +
1608B TYR* 3.1 12.5 + - + +
1610B GLN* 1.3 76.6 - - - +
1612B VAL* 1.3 62.4 + - + +
1614B VAL* 3.3 5.7 + - + +
1615B LEU* 3.1 23.0 + - + +
1673B MET* 4.5 6.1 - - - -
1678B MET* 4.3 10.8 - - + -
1686B VAL* 3.9 30.5 - - + -
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Residues in contact with VAL1612 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1608B TYR* 3.1 43.6 + - + +
1609B GLN 3.7 7.2 - - - +
1611B LEU* 1.3 78.4 - - + +
1613B ARG* 1.3 58.0 + - - +
1615B LEU* 3.2 10.3 - - + +
1616B GLU* 2.9 30.4 + - + +
1686B VAL* 5.6 4.9 - - + -
1689B GLN* 3.6 35.2 - - + +
1693B ILE* 4.9 5.2 - - + -
1822B ILE* 4.0 26.9 - - + -
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Residues in contact with ARG1613 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1606B GLN* 4.6 11.5 + - - -
1609B GLN* 3.2 39.6 + - - +
1610B GLN* 3.3 36.1 - - + +
1612B VAL* 1.3 76.8 - - - +
1614B VAL* 1.3 64.0 + - + +
1616B GLU* 3.7 8.2 - - - +
1617B ASN* 3.1 23.7 + - - +
1822B ILE* 5.0 10.6 - - + +
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Residues in contact with VAL1614 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1546B GLY 3.5 25.4 - - - +
1547B ASP* 4.0 21.3 - - + +
1549B PHE* 4.0 35.4 - - + +
1552B VAL* 4.6 6.3 - - + -
1610B GLN* 3.1 19.1 + - + +
1611B LEU* 3.7 8.1 - - - +
1613B ARG* 1.3 78.1 - - + +
1615B LEU* 1.3 61.3 + - - +
1617B ASN* 3.4 12.0 + - - +
1618B ILE* 3.3 25.2 + - + +
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Residues in contact with LEU1615 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1549B PHE* 4.4 10.5 - - + -
1611B LEU* 3.1 16.4 + - + +
1612B VAL* 3.2 23.3 - - + +
1614B VAL* 1.3 75.3 - - - +
1616B GLU* 1.3 60.6 + - + +
1618B ILE* 3.2 2.4 + - - +
1619B LEU* 3.0 32.7 + - - +
1669B PHE* 3.8 34.4 - - + -
1686B VAL* 5.1 7.6 - - + -
1689B GLN* 5.9 1.3 - - + -
1690B MET* 4.3 21.1 - - + -
1693B ILE* 5.3 3.6 - - + -
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Residues in contact with GLU1616 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1612B VAL* 2.9 21.6 + - + +
1613B ARG* 3.7 8.2 - - - +
1615B LEU* 1.3 77.7 - - - +
1617B ASN* 1.3 65.2 + - - +
1619B LEU* 4.6 2.0 - - - +
1620B GLN* 3.1 48.1 + - - +
1693B ILE* 3.6 38.6 - - + +
1697B ILE* 5.0 1.7 - - - +
1819B ALA* 4.6 7.5 - - - +
1820B LYS* 2.7 41.5 + - + +
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Residues in contact with ASN1617 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1613B ARG 3.1 17.5 + - - +
1614B VAL* 3.6 8.1 - - - +
1615B LEU 3.2 0.2 - - - -
1616B GLU* 1.3 83.1 + - - +
1618B ILE* 1.3 63.4 + - - +
1620B GLN* 4.8 2.0 - - - +
1621B PRO* 3.4 18.7 - - - +
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Residues in contact with ILE1618 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1547B ASP 6.1 0.2 - - - +
1549B PHE* 5.1 4.9 - - + -
1614B VAL* 3.3 28.0 - - + +
1615B LEU 3.2 5.8 + - - +
1616B GLU 3.2 0.2 - - - -
1617B ASN* 1.3 83.0 - - - +
1619B LEU* 1.3 64.0 + - - +
1621B PRO* 3.3 10.6 - - - +
1622B MET* 3.4 22.8 - - + +
1665B GLN* 3.7 30.7 - - + +
1669B PHE* 3.8 22.7 - - + -
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Residues in contact with LEU1619 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1615B LEU 3.0 17.8 + - - +
1616B GLU* 4.3 2.9 - - - +
1618B ILE* 1.3 76.4 - - - +
1620B GLN* 1.3 56.2 + - - +
1622B MET* 2.8 35.0 + - + +
1623B ILE* 3.3 20.3 - - + +
1662B ILE* 4.4 16.8 - - + -
1665B GLN* 4.1 19.3 - - + -
1666B LEU* 4.0 25.8 - - + -
1669B PHE* 4.0 7.2 - - + -
1690B MET* 3.9 44.9 - - + +
1693B ILE* 4.9 7.6 - - + -
1694B ILE* 4.6 6.7 - - + -
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Residues in contact with GLN1620 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1616B GLU* 3.1 34.4 + - + +
1617B ASN* 4.8 2.0 - - - +
1619B LEU* 1.3 75.7 - - - +
1621B PRO* 1.3 78.5 - - + +
1622B MET 3.2 1.0 + - - -
1623B ILE* 3.6 21.3 + - - +
1624B VAL* 4.7 6.4 + - - +
1693B ILE* 5.2 0.8 - - - +
1697B ILE* 3.6 27.2 - - + +
1820B LYS* 5.0 5.8 - - - +
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Residues in contact with PRO1621 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1617B ASN 3.4 15.5 - - - +
1618B ILE 3.3 17.9 - - - +
1620B GLN* 1.3 105.4 - - + +
1622B MET* 1.3 58.6 + - + +
1623B ILE 3.5 0.2 - - - -
1624B VAL* 5.0 2.4 + - - +
1625B SER* 4.8 6.9 + - - -
1657B TYR* 3.5 26.7 - - + +
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Residues in contact with MET1622 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1618B ILE* 3.4 32.3 - - + +
1619B LEU* 2.8 14.5 + - + +
1621B PRO* 1.3 78.6 - - - +
1623B ILE* 1.3 59.4 + - - +
1624B VAL 3.6 0.2 - - - -
1625B SER 3.7 1.9 + - - -
1626B GLY* 3.0 28.4 + - - -
1657B TYR* 3.5 53.1 - - + +
1661B SER* 4.4 9.6 - - - +
1662B ILE* 3.7 16.7 - - + +
1665B GLN* 3.8 39.7 - - + +
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Residues in contact with ILE1623 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1619B LEU* 3.3 21.5 - - + +
1620B GLN* 3.6 6.9 + - - +
1621B PRO 3.5 1.0 - - - -
1622B MET* 1.3 75.3 - - - +
1624B VAL* 1.3 61.7 + - - +
1627B MET* 2.8 41.9 + - + +
1662B ILE* 4.0 9.2 - - + -
1693B ILE* 3.5 32.1 - - + +
1694B ILE* 3.6 28.3 - - + +
1697B ILE* 3.6 30.7 - - + -
1698B THR* 3.3 26.2 - - - +
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Residues in contact with VAL1624 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1620B GLN* 4.7 7.7 + - - +
1621B PRO 5.0 1.9 + - - +
1622B MET 3.6 0.2 - - - -
1623B ILE* 1.3 75.8 - - - +
1625B SER* 1.3 63.4 + - - +
1627B MET* 5.3 0.2 - - - -
1628B LEU* 3.2 26.9 + - + +
1629B GLU* 3.3 19.1 + - - +
1697B ILE* 4.0 12.8 - - + +
1701B ASN* 3.4 37.7 - - - +
1705B ARG* 3.7 25.8 - - - +
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Residues in contact with SER1625 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1621B PRO 4.8 6.6 + - - -
1622B MET 3.7 7.3 + - - -
1623B ILE 3.3 0.4 - - - -
1624B VAL* 1.3 80.4 - - - +
1626B GLY* 1.3 59.9 + - - +
1629B GLU* 3.6 20.2 + - - +
1630B HIS* 3.0 32.9 + - - +
1656B THR* 2.8 26.0 + - - +
1657B TYR* 2.8 26.5 + - - -
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Residues in contact with GLY1626 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1622B MET 3.0 16.7 + - - -
1625B SER* 1.3 79.5 - - - +
1627B MET* 1.3 61.6 + - - +
1630B HIS* 4.5 8.6 + - - +
1657B TYR 3.5 3.1 + - - -
1658B THR* 3.6 26.7 - - - -
1659B LEU* 3.7 17.3 + - - +
1662B ILE* 4.1 3.8 - - - -
1720B ASN* 3.9 8.8 + - - -
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Residues in contact with MET1627 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1623B ILE* 2.8 27.9 + - + +
1626B GLY* 1.3 74.1 - - - +
1628B LEU* 1.3 66.6 + - + +
1630B HIS 5.5 0.4 - - - -
1659B LEU* 4.1 17.5 - - - -
1662B ILE* 3.9 13.7 - - + -
1694B ILE* 4.1 13.2 - - + -
1698B THR* 3.6 25.1 - - + +
1716B GLN* 4.7 1.6 - - - +
1717B ILE* 4.3 10.6 - - + +
1720B ASN* 2.8 47.6 + - + +
1721B VAL* 4.3 6.3 - - + -
1724B LEU* 4.1 19.7 - - + -
1745B LEU* 4.2 25.1 - - + -
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Residues in contact with LEU1628 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1624B VAL* 3.2 18.1 + - + +
1626B GLY 3.5 0.4 - - - -
1627B MET* 1.3 87.1 - - + +
1629B GLU* 1.3 66.9 + - + +
1630B HIS 3.4 7.4 + - - +
1698B THR* 3.8 27.8 - - + +
1701B ASN* 3.6 32.8 - - + +
1702B LEU* 4.7 8.1 - - + +
1705B ARG* 4.9 1.1 - - - +
1708B MET* 4.0 28.0 - - + -
1713B LYS* 3.2 27.0 - - + -
1716B GLN* 4.8 4.4 - - - +
1717B ILE* 3.6 32.5 - - + -
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il