Contacts of the helix formed by residues 13 - 42 (chain D) in PDB entry 5JKL


Residue contacts within the protein are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332). A short description of the analytical approach is given at the end of the page.
For CSU analysis of other PDB entry

Note:
Non-standard 3 letter residue codes indicate a heterogroup. To identify and analyse, use LPC software

Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB   - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC   - hydrophobic-hydrophilic contact (destabilizing contact)
+/-  - indicates presence/absence of a specific contacts
*    - indicates residues forming contacts  by their side chain
       (including CA atoms)
Residues in contact with HIS 13 (chain D).
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
      9D  ARG*     3.7     2.7    +      -       -      -
     11D  ASN      4.0     2.4    +      -       -      -
     12D  TYR*     1.3    77.8    -      -       -      +
     14D  GLN*     1.3    73.4    +      -       +      +
     15D  ASP*     3.0    47.7    +      -       -      +
     16D  SER*     3.0    27.8    +      -       -      +
     17D  GLU*     3.1     9.9    +      -       -      +
    124D  LYS*     3.7    42.5    +      -       +      +
    126D  ASP*     4.8     1.0    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLN 14 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
      9D  ARG*     3.7    13.6    -      -       -      +
     12D  TYR      3.6     2.6    +      -       -      -
     13D  HIS*     1.3    81.9    +      -       +      +
     15D  ASP*     1.3    66.4    +      -       -      +
     17D  GLU*     3.3     9.6    +      -       -      +
     18D  LYS*     2.5    53.8    +      -       +      +
----------------------------------------------------------
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Residues in contact with ASP 15 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     13D  HIS*     3.0    29.4    +      -       -      +
     14D  GLN*     1.3    81.4    +      -       -      +
     16D  SER*     1.3    57.5    +      -       -      +
     18D  LYS*     3.5    11.1    +      -       -      +
     19D  ALA*     2.9    28.6    +      -       -      +
     22D  ARG*     4.8     2.4    +      -       -      -
    120D  LEU*     3.6    22.8    -      -       +      +
    124D  LYS*     3.7    13.4    +      -       -      -
----------------------------------------------------------
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Residues in contact with SER 16 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     12D  TYR*     4.1    12.1    -      -       -      -
     13D  HIS*     3.0    24.6    +      -       -      +
     15D  ASP*     1.3    76.5    -      -       -      +
     17D  GLU*     1.3    59.2    +      -       -      +
     19D  ALA*     3.2     3.3    +      -       -      +
     20D  ILE*     2.9    34.3    +      -       -      +
    117D  LEU*     4.7     1.0    -      -       -      +
    120D  LEU*     4.1    14.0    -      -       -      +
    121D  ALA*     4.8     2.8    -      -       -      -
    124D  LYS*     4.3    13.5    -      -       -      +
    126D  ASP*     4.7     3.3    +      -       -      -
    129D  LEU*     3.9    25.8    -      -       -      +
----------------------------------------------------------
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Residues in contact with GLU 17 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
      9D  ARG*     2.8    25.7    +      -       -      -
     12D  TYR*     3.7    21.2    -      -       +      -
     13D  HIS      3.1     8.4    +      -       -      +
     14D  GLN*     3.5    15.7    -      -       -      +
     16D  SER*     1.3    73.7    -      -       -      +
     18D  LYS*     1.3    66.5    +      -       +      +
     20D  ILE      3.4     0.9    +      -       -      -
     21D  ASN*     3.2    11.9    +      -       -      +
     73D  GLN*     3.0    36.4    +      -       -      +
     78D  GLY*     3.5    11.2    -      -       -      -
     79D  ARG*     2.8    31.9    +      -       -      +
     81D  PHE*     5.4     1.7    -      -       -      -
----------------------------------------------------------
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Residues in contact with LYS 18 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     14D  GLN*     2.5    52.7    +      -       +      +
     15D  ASP*     3.8     8.5    -      -       -      +
     17D  GLU*     1.3    78.9    -      -       +      +
     19D  ALA*     1.3    64.1    +      -       -      +
     21D  ASN*     3.2    12.4    +      -       -      +
     22D  ARG*     3.1    38.3    +      -       -      +
----------------------------------------------------------
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Residues in contact with ALA 19 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     15D  ASP      2.9    19.6    +      -       -      +
     16D  SER      3.2     3.1    +      -       -      +
     18D  LYS*     1.3    72.5    -      -       -      +
     20D  ILE*     1.3    60.4    +      -       -      +
     22D  ARG*     3.2    29.4    +      -       -      +
     23D  GLN*     2.9    27.9    +      -       -      +
    117D  LEU*     3.5    26.4    -      -       +      +
    120D  LEU*     3.8    11.4    -      -       +      -
----------------------------------------------------------
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Residues in contact with ILE 20 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     12D  TYR*     3.5    16.4    -      -       +      +
     16D  SER      2.9    20.8    +      -       -      +
     17D  GLU      3.7     4.7    -      -       -      +
     18D  LYS      3.2     0.2    -      -       -      -
     19D  ALA*     1.3    75.2    -      -       -      +
     21D  ASN*     1.3    58.6    +      -       -      +
     23D  GLN*     3.1     4.0    +      -       -      +
     24D  ILE*     2.9    33.4    +      -       +      +
     69D  LEU*     3.8    39.9    -      -       +      +
     72D  LEU*     4.3     7.6    -      -       +      -
     73D  GLN*     3.7    17.3    -      -       +      +
    117D  LEU*     3.8    28.3    -      -       +      -
    129D  LEU*     4.0    24.0    -      -       +      -
    132D  PHE*     5.2     0.4    -      -       +      -
----------------------------------------------------------
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Residues in contact with ASN 21 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     17D  GLU*     3.2    13.3    +      -       -      +
     18D  LYS*     3.2    11.7    +      -       -      +
     20D  ILE*     1.3    75.2    -      -       -      +
     22D  ARG*     1.3    62.8    +      -       +      +
     24D  ILE*     3.4    16.2    +      -       -      +
     25D  ARG*     3.2    20.4    +      -       -      +
     73D  GLN*     3.0    19.9    +      -       -      +
     79D  ARG      3.0    21.6    +      -       -      -
     80D  ILE*     3.5     6.6    -      -       -      +
     81D  PHE*     3.4    46.0    +      -       +      +
----------------------------------------------------------
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Residues in contact with ARG 22 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     15D  ASP      4.8     2.0    +      -       -      -
     18D  LYS*     3.1    30.6    +      -       -      +
     19D  ALA*     3.2    33.0    +      -       -      +
     21D  ASN*     1.3    75.4    -      -       +      +
     23D  GLN*     1.3    62.8    +      -       -      +
     25D  ARG*     3.2    11.3    +      -       -      +
     26D  LEU*     3.1    20.4    +      -       -      +
    113D  SER*     5.8     0.2    -      -       -      -
    120D  LEU*     5.1     4.0    -      -       -      +
----------------------------------------------------------
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Residues in contact with GLN 23 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     19D  ALA      2.9    15.4    +      -       -      +
     20D  ILE*     3.1     5.8    +      -       -      +
     22D  ARG*     1.3    74.7    -      -       -      +
     24D  ILE*     1.3    65.6    +      -       -      +
     26D  LEU*     3.1    12.9    +      -       -      +
     27D  GLU*     2.9    51.8    +      -       -      +
     69D  LEU*     3.6    22.4    -      -       +      -
    110D  VAL*     3.8    11.1    +      -       -      +
    113D  SER*     2.5    36.3    +      -       -      +
    114D  LEU*     3.6    29.0    -      -       +      +
    117D  LEU*     4.3    16.2    -      -       +      +
----------------------------------------------------------
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Residues in contact with ILE 24 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     20D  ILE*     2.9    30.0    +      -       +      +
     21D  ASN*     3.6    25.8    -      -       -      +
     22D  ARG      3.4     0.2    -      -       -      -
     23D  GLN*     1.3    75.3    -      -       -      +
     25D  ARG*     1.3    62.3    +      -       -      +
     27D  GLU*     3.3     4.8    +      -       -      +
     28D  LEU*     3.0    33.1    +      -       +      +
     66D  ALA*     4.2     5.1    -      -       +      +
     69D  LEU*     3.5    26.2    -      -       +      +
     70D  MET*     3.7    41.7    -      -       +      +
     73D  GLN*     4.8     0.7    -      -       +      -
     80D  ILE*     4.7     7.9    -      -       +      -
     82D  LEU*     4.1    22.0    -      -       +      -
----------------------------------------------------------
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Residues in contact with ARG 25 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     32C  TYR*     5.8     0.7    -      -       -      +
     21D  ASN      3.2    10.1    +      -       -      +
     22D  ARG*     3.2    13.2    +      -       -      +
     24D  ILE*     1.3    78.6    -      -       -      +
     26D  LEU*     1.3    58.7    +      -       -      +
     28D  LEU*     3.3     3.9    +      -       -      +
     29D  TYR*     2.9    28.9    +      -       +      +
     83D  GLN*     3.5    37.8    +      -       +      +
     84D  ASP*     2.9    28.8    +      -       -      +
     85D  ILE*     3.9    20.8    -      -       +      +
     86D  GLN*     3.4    24.0    -      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 26 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     22D  ARG      3.1    12.5    +      -       -      +
     23D  GLN*     3.1    17.9    +      -       -      +
     25D  ARG*     1.3    77.1    -      -       -      +
     27D  GLU*     1.3    58.8    +      -       -      +
     29D  TYR*     3.3    15.9    +      -       +      +
     30D  ALA*     2.9    26.7    +      -       -      +
    106D  LEU*     5.3     0.4    -      -       +      -
    109D  LYS*     3.9    31.4    -      -       +      +
    110D  VAL*     4.0    26.2    -      -       +      -
    113D  SER*     3.5    35.0    -      -       -      +
----------------------------------------------------------
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Residues in contact with GLU 27 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     23D  GLN*     2.9    42.9    +      -       -      +
     24D  ILE      3.7     3.6    -      -       -      +
     26D  LEU*     1.3    77.4    -      -       -      +
     28D  LEU*     1.3    56.6    +      -       -      +
     30D  ALA*     3.3     5.1    +      -       -      +
     31D  SER*     2.9    27.2    +      -       -      -
     62D  GLU*     2.8    17.5    -      -       -      +
     65D  HIS*     3.3    12.5    -      -       +      +
     66D  ALA*     3.9    18.2    -      -       +      +
     69D  LEU*     3.7    18.2    -      -       +      -
    110D  VAL*     3.5    12.0    -      -       -      +
    114D  LEU*     4.5     0.3    -      -       -      +
    137D  TYR*     4.1    15.1    -      -       -      -
    201D   FE      2.0    33.2    -      -       -      -
----------------------------------------------------------
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Residues in contact with LEU 28 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     32C  TYR*     3.6    38.4    -      -       +      +
     35C  LEU*     4.2    18.6    -      -       +      -
     24D  ILE*     3.0    34.0    +      -       +      +
     25D  ARG*     3.7     6.5    -      -       -      +
     27D  GLU*     1.3    72.3    -      -       -      +
     29D  TYR*     1.3    66.7    +      -       -      +
     31D  SER*     3.3     8.6    +      -       -      -
     32D  TYR*     3.0    21.1    +      -       -      +
     63D  ARG*     5.1    11.7    -      -       +      +
     66D  ALA*     3.5    22.0    -      -       +      -
     67D  GLU*     6.4     0.2    -      -       +      -
     82D  LEU*     4.6     2.2    -      -       +      -
     85D  ILE*     3.7    19.3    -      -       +      +
----------------------------------------------------------
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Residues in contact with TYR 29 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     25D  ARG*     2.9    18.1    +      -       +      +
     26D  LEU*     3.5    22.4    -      -       +      +
     27D  GLU      3.3     0.2    -      -       -      -
     28D  LEU*     1.3    76.7    -      -       -      +
     30D  ALA*     1.3    59.9    +      -       -      +
     32D  TYR*     3.0     5.1    +      -       +      +
     33D  VAL*     2.9    52.3    +      -       +      +
     85D  ILE*     3.9    10.9    -      -       +      +
     86D  GLN*     3.3    39.0    -      -       +      +
     87D  LYS      3.8    12.0    +      -       -      -
     88D  PRO*     4.3     0.2    -      -       +      -
     89D  ASP*     4.0    26.9    +      -       -      -
    106D  LEU*     4.1    15.3    -      -       +      -
    109D  LYS*     4.6    12.3    -      -       -      -
----------------------------------------------------------
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Residues in contact with ALA 30 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     26D  LEU      2.9    16.9    +      -       -      +
     27D  GLU*     3.3     6.3    +      -       -      +
     29D  TYR*     1.3    76.6    -      -       -      +
     31D  SER*     1.3    63.3    +      -       -      +
     33D  VAL*     3.3     2.1    +      -       -      +
     34D  TYR*     3.1    28.1    +      -       -      -
     62D  GLU*     3.9    24.0    -      -       +      +
    106D  LEU*     4.0    32.3    -      -       +      -
    107D  GLU*     6.4     0.9    -      -       -      -
    110D  VAL*     4.5     9.2    -      -       +      -
----------------------------------------------------------
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Residues in contact with SER 31 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     63C  ARG*     3.1    24.0    +      -       -      -
     27D  GLU      2.9    14.4    +      -       -      -
     28D  LEU*     3.5    13.7    -      -       -      -
     29D  TYR      3.2     0.2    -      -       -      -
     30D  ALA*     1.3    77.2    -      -       -      +
     32D  TYR*     1.4    58.6    +      -       -      +
     35D  LEU*     3.0    14.6    +      -       -      +
     59D  SER*     2.7    47.7    +      -       -      +
     62D  GLU*     3.6    14.2    -      -       -      +
     63D  ARG*     3.9    12.0    +      -       -      +
----------------------------------------------------------
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Residues in contact with TYR 32 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     25C  ARG*     5.5     0.7    -      -       -      +
     28C  LEU*     3.7    24.9    -      -       +      +
     63C  ARG*     5.1     2.9    -      -       -      +
     82C  LEU*     3.4    27.3    -      -       +      +
     83C  GLN      2.6    39.1    +      -       -      -
     85C  ILE*     3.4    25.1    -      -       +      +
     28D  LEU      3.0    11.3    +      -       -      +
     29D  TYR*     3.0    10.4    +      -       -      +
     31D  SER*     1.4    72.7    -      -       -      +
     33D  VAL*     1.3    67.0    +      -       -      +
     35D  LEU*     3.2    15.8    +      -       +      +
     36D  SER*     3.0    23.0    +      -       -      -
     85D  ILE*     4.0    12.6    -      -       +      -
     86D  GLN      3.5    20.2    -      -       -      +
     87D  LYS*     3.9    13.0    -      -       -      -
     88D  PRO*     3.8     7.6    -      -       +      -
----------------------------------------------------------
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Residues in contact with VAL 33 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     29D  TYR*     2.9    54.8    +      -       +      +
     30D  ALA      3.7     6.1    -      -       -      +
     32D  TYR*     1.3    76.2    -      -       -      +
     34D  TYR*     1.3    57.8    +      -       -      +
     36D  SER*     3.2     5.7    +      -       -      -
     37D  MET*     2.9    49.0    +      -       +      +
     88D  PRO*     3.8    15.9    -      -       +      -
     89D  ASP      5.5     0.2    -      -       -      +
     93D  TRP*     3.9    13.4    -      -       +      -
    106D  LEU*     3.8    23.8    -      -       +      -
----------------------------------------------------------
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Residues in contact with TYR 34 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     30D  ALA      3.1    21.6    +      -       -      +
     33D  VAL*     1.3    72.2    -      -       -      +
     35D  LEU*     1.3    59.9    +      -       -      +
     37D  MET*     4.1     8.1    -      -       -      -
     38D  SER*     2.9    30.1    +      -       -      -
     54D  TYR*     5.8     0.2    -      +       -      -
     55D  PHE*     3.5    49.3    -      +       -      +
     58D  GLN*     3.6    27.4    +      -       +      +
     59D  SER*     3.5    10.1    -      -       -      +
     62D  GLU*     3.8    21.5    -      -       +      -
    103D  ALA*     3.8    22.7    +      -       +      +
    106D  LEU*     4.1    16.8    -      -       +      -
    107D  GLU*     2.6    41.5    +      -       -      +
    148D  LEU*     4.0     5.1    -      -       +      +
----------------------------------------------------------
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Residues in contact with LEU 35 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     28C  LEU*     4.3    14.6    -      -       +      -
     63C  ARG*     4.0    22.0    -      -       -      +
     67C  GLU*     4.0    14.8    -      -       +      +
     70C  MET*     3.8    21.4    -      -       +      +
     82C  LEU*     5.2     0.2    -      -       +      -
     31D  SER      3.0    15.3    +      -       -      +
     32D  TYR*     3.2    28.9    +      -       +      +
     34D  TYR*     1.3    75.1    -      -       -      +
     36D  SER*     1.3    62.1    +      -       -      +
     38D  SER*     3.3     6.2    +      -       -      -
     39D  TYR*     3.2    49.3    +      -       +      +
     56D  LEU*     3.9    14.6    -      -       +      -
     59D  SER*     3.6     8.6    +      -       -      +
----------------------------------------------------------
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Residues in contact with SER 36 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     70C  MET*     5.0     2.2    -      -       -      -
     82C  LEU*     3.6    24.9    -      -       -      +
     32D  TYR      3.0    13.0    +      -       -      -
     33D  VAL      3.4     9.0    -      -       -      -
     35D  LEU*     1.3    73.5    -      -       -      +
     37D  MET*     1.3    67.7    +      -       -      +
     39D  TYR*     3.4     1.9    +      -       -      +
     40D  TYR*     3.1    21.1    +      -       -      +
     88D  PRO*     3.9    11.9    -      -       -      -
     90D  LYS      3.7     9.2    +      -       -      -
     91D  ASP*     4.3     6.6    +      -       -      +
     93D  TRP*     2.9    18.8    +      -       -      -
----------------------------------------------------------
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Residues in contact with MET 37 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     33D  VAL*     2.9    27.0    +      -       +      +
     34D  TYR*     3.7    19.7    -      -       -      +
     35D  LEU      3.3     0.2    -      -       -      -
     36D  SER*     1.3    77.0    -      -       -      +
     38D  SER*     1.4    62.9    +      -       -      +
     40D  TYR*     3.1     9.8    +      -       -      +
     41D  PHE*     3.0    25.1    +      -       +      -
     55D  PHE*     3.9    33.7    -      -       +      -
     93D  TRP*     3.6    53.8    -      -       +      -
     99D  ALA*     3.5    28.3    -      -       +      +
    102D  LYS*     3.8     9.6    -      -       +      -
    103D  ALA*     3.9     9.4    -      -       -      +
----------------------------------------------------------
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Residues in contact with SER 38 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     34D  TYR      2.9    17.9    +      -       -      -
     35D  LEU*     3.4     7.6    -      -       -      -
     37D  MET*     1.4    75.8    -      -       -      +
     39D  TYR*     1.3    67.3    +      -       -      +
     41D  PHE      3.1    15.1    +      -       -      -
     42D  ASP*     3.3     2.0    +      -       -      +
     52D  ALA*     2.7    46.0    +      -       -      +
     55D  PHE*     3.7     8.4    -      -       -      +
     56D  LEU*     3.4    26.7    -      -       -      +
----------------------------------------------------------
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Residues in contact with TYR 39 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     67C  GLU*     3.4    30.8    +      -       +      +
     70C  MET*     3.6    37.5    -      -       +      -
     71C  LYS*     3.7    25.4    -      -       +      +
     74C  ASN*     2.9    23.9    +      -       -      +
     80C  ILE*     3.6    21.3    -      -       +      +
     35D  LEU*     3.2    29.8    +      -       +      +
     36D  SER      3.4     2.4    +      -       -      +
     38D  SER*     1.3    82.2    -      -       -      +
     40D  TYR*     1.3    65.6    +      -       -      +
     42D  ASP*     3.4    26.8    +      -       +      -
     43D  ARG*     3.5     3.5    +      -       -      +
     56D  LEU*     4.1    22.1    -      -       +      +
----------------------------------------------------------
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Residues in contact with TYR 40 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     36D  SER      3.1    12.5    +      -       -      +
     37D  MET      3.1     8.7    +      -       -      +
     39D  TYR*     1.3    77.6    -      -       -      +
     41D  PHE*     1.3    92.6    +      +       -      +
     43D  ARG*     3.1    46.7    +      -       -      +
     46D  VAL*     3.4    32.7    -      -       +      +
     91D  ASP      4.2     4.9    -      -       -      +
     92D  ASP*     3.4    29.3    +      -       -      -
     93D  TRP*     3.6    26.5    -      -       +      -
     94D  GLU*     3.1    38.8    +      -       -      -
     95D  SER*     4.1     3.8    -      -       -      -
----------------------------------------------------------
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Residues in contact with PHE 41 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     37D  MET*     3.0    24.4    +      -       +      -
     38D  SER      3.1     4.4    +      -       -      +
     40D  TYR*     1.3    96.5    -      +       -      +
     42D  ASP*     1.3    55.6    +      -       -      +
     43D  ARG      3.4     0.4    -      -       -      -
     46D  VAL*     3.6    16.2    -      -       +      -
     47D  ALA*     3.3     8.6    +      -       -      -
     48D  LEU*     3.0    55.3    +      -       +      +
     49D  LYS*     5.0     0.3    -      -       -      -
     51D  PHE*     3.6    16.4    -      +       +      -
     52D  ALA*     3.6    12.1    -      -       -      +
     55D  PHE*     3.6    22.9    -      +       -      -
     93D  TRP*     5.0     0.2    -      -       +      -
     95D  SER      3.6    19.3    -      -       -      -
     96D  GLY*     3.6    25.1    -      -       -      -
     99D  ALA*     3.6    23.6    -      -       +      -
----------------------------------------------------------
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Residues in contact with ASP 42 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     71C  LYS*     4.1    18.2    +      -       -      +
     74C  ASN*     3.0    38.5    +      -       -      +
     38D  SER      3.3    10.0    +      -       -      +
     39D  TYR*     3.7    24.7    -      -       +      +
     40D  TYR      3.1     0.6    -      -       -      -
     41D  PHE*     1.3    75.3    -      -       -      +
     43D  ARG*     1.3    65.0    +      -       -      +
     44D  ASP*     3.6     1.4    +      -       -      -
     47D  ALA*     5.2     1.1    -      -       -      +
     49D  LYS*     6.2     0.4    -      -       -      +
     52D  ALA*     4.1     8.6    -      -       +      +
----------------------------------------------------------
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A short description of the analytical approach
The contact analysis used in this page is based upon the approach developed in: Sobolev V., Wade R.C., Vriend G. and Edelman M. PROTEINS (1996) 25, 120-129. Contact legitimacy depends on the hydrophobic-hydrophilic properties of the contacting atoms. In order to define it, for each inter-atomic contact, eight atom classes have been introduced:


   I  Hydrophilic      - N and O that can donate and accept hydrogen bonds
                         (e.g., oxygen of hydroxyl group of Ser. or Thr)
  II  Acceptor         - N or O that can only accept a hydrogen bond
 III  Donor            - N that can only donate a hydrogen bond
  IV  Hydrophobic      - Cl, Br, I and all C atoms that are not in
                         aromatic rings and do not have a covalent bond to
                         a N or O atom
   V  Aromatic         - C in aromatic rings irrespective of any other 
                         bonds formed by the atom
  VI  Neutral          - C atoms that have a covalent bond to at least one
                         atom of class I or two or more atoms from class II
                         or III; atoms; S, F, P, and metal atoms in all cases
 VII  Neutral-donor    - C atoms that have a covalent bond with only one
                         atom of class III
VIII  Neutral-acceptor - C atoms that have a covalent bond with only 
                         one atom of class II
For each pair of contacts the state of legitimacy is shown below:

Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
  Atomic class           I  II  III   IV   V   VI  VII  VIII
------------------------------------------------------------
   I  (Hydrophilic)      +   +    +    -   +   +    +    +
  II  (Acceptor)         +   -    +    -   +   +    +    -
 III  (Donor)            +   +    -    -   +   +    -    +
  IV  (Hydrophobic)      -   -    -    +   +   +    +    +
   V  (Aromatic)         +   +    +    +   +   +    +    +
  VI  (Neutral)          +   +    +    +   +   +    +    +
 VII  (Neutral-donor)    +   +    -    +   +   +    -    +
VIII  (Neutral-acceptor) +   -    +    +   +   +    +    -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically assigned based on the atomic coordinates. However, in three cases (see below) the automatic assignment is currently ambiguous. In these cases, the user is advised to manually analyse the full list of contacts using LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are 
   considered "aromatic" (Class V) if the ring is approximately
   planar, and "hydrophobic" (Class IV) or "neutral" (Classes
   VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
   "hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
   "carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).

Please E-mail any questions and/or suggestions concerning this page to Vladimir.Sobolev@weizmann.ac.il