Contacts of the helix formed by residues 95 - 124 (chain G) in PDB entry 5JKL


Residue contacts within the protein are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332). A short description of the analytical approach is given at the end of the page.
For CSU analysis of other PDB entry

Note:
Non-standard 3 letter residue codes indicate a heterogroup. To identify and analyse, use LPC software

Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB   - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC   - hydrophobic-hydrophilic contact (destabilizing contact)
+/-  - indicates presence/absence of a specific contacts
*    - indicates residues forming contacts  by their side chain
       (including CA atoms)
Residues in contact with SER 95 (chain G).
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     40G  TYR*     3.8     3.9    +      -       -      -
     41G  PHE*     3.5    13.2    -      -       -      -
     93G  TRP      2.8     9.4    +      -       -      +
     94G  GLU*     1.3    79.7    +      -       -      +
     96G  GLY*     1.3    64.5    +      -       -      +
     97G  LEU*     3.6     1.7    +      -       -      +
     98G  ASN*     3.0    24.8    +      -       -      +
     99G  ALA      3.0    17.8    +      -       -      -
    161G  PRO*     3.7    24.2    -      -       -      +
    167G  GLU*     3.6    14.4    -      -       -      -
----------------------------------------------------------
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Residues in contact with GLY 96 (chain G). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     41G  PHE*     3.7    13.8    -      -       -      -
     51G  PHE*     3.5    26.7    -      -       -      -
     95G  SER*     1.3    71.6    -      -       -      +
     97G  LEU*     1.4    62.2    +      -       -      +
     99G  ALA*     3.3     3.5    +      -       -      +
    100G  MET*     3.0    27.9    +      -       -      +
    155G  LEU*     4.1     2.0    -      -       -      -
    167G  GLU*     2.8    23.4    +      -       -      -
----------------------------------------------------------
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Residues in contact with LEU 97 (chain G). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     95G  SER*     3.3     4.0    -      -       -      +
     96G  GLY*     1.4    73.3    -      -       -      +
     98G  ASN*     1.4    64.4    +      -       -      +
    100G  MET*     3.2     2.1    +      -       -      +
    101G  GLU*     2.9    44.7    +      -       -      +
    152G  VAL*     3.9    34.3    -      -       +      +
    155G  LEU*     3.9    17.6    -      -       +      +
    156G  ARG*     4.1    15.0    -      -       +      -
    160G  ALA*     3.6    18.6    -      -       +      +
    161G  PRO*     3.6    28.9    -      -       +      -
    167G  GLU*     2.9    16.2    +      -       -      +
----------------------------------------------------------
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Residues in contact with ASN 98 (chain G). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     90G  GLU*     5.8     3.2    -      -       -      +
     93G  TRP*     3.0    33.7    +      -       -      +
     94G  GLU*     3.7    26.1    -      -       +      +
     95G  SER*     3.0    17.1    +      -       -      +
     97G  LEU*     1.4    77.9    -      -       -      +
     99G  ALA*     1.3    57.2    +      -       -      +
    101G  GLU*     3.2    16.4    +      -       -      +
    102G  GLU*     2.8    52.9    +      -       -      +
----------------------------------------------------------
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Residues in contact with ALA 99 (chain G). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     37G  MET*     3.7    12.4    -      -       -      +
     41G  PHE*     3.6    27.6    -      -       +      -
     55G  PHE*     4.0    12.3    -      -       +      -
     93G  TRP*     3.9    16.3    +      -       +      -
     95G  SER      3.0    18.2    +      -       -      +
     96G  GLY      3.8     2.0    -      -       -      +
     98G  ASN*     1.3    77.3    -      -       -      +
    100G  MET*     1.3    58.0    +      -       -      +
    102G  GLU*     3.3     5.1    +      -       -      -
    103G  ALA*     2.9    29.1    +      -       -      +
----------------------------------------------------------
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Residues in contact with MET 100 (chain G). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     51G  PHE*     3.8    21.3    -      -       +      -
     54G  TYR*     3.9    24.7    -      -       +      -
     55G  PHE*     3.8    12.8    -      -       +      -
     96G  GLY      3.0    21.0    +      -       -      +
     97G  LEU      3.6     4.3    -      -       -      +
     99G  ALA*     1.3    75.6    -      -       -      +
    101G  GLU*     1.3    58.3    +      -       -      +
    103G  ALA*     3.3     4.5    +      -       -      +
    104G  LEU*     2.9    28.8    +      -       -      +
    148G  LEU*     3.7    27.6    -      -       +      +
    151G  HIS*     3.9    25.6    -      -       +      -
    152G  VAL*     3.8    19.2    -      -       +      +
    155G  LEU*     3.9    15.7    -      -       +      -
    170G  PHE*     4.4     2.2    -      -       +      -
    175G  LEU*     4.0    11.2    -      -       +      -
----------------------------------------------------------
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Residues in contact with GLU 101 (chain G). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     97G  LEU*     2.9    35.4    +      -       +      +
     98G  ASN*     3.2    17.8    +      -       -      +
    100G  MET*     1.3    77.5    -      -       -      +
    102G  GLU*     1.3    58.4    +      -       +      +
    104G  LEU*     3.4     8.1    +      -       +      +
    105G  GLU*     3.1    26.9    +      -       -      +
    152G  VAL*     3.9    21.3    -      -       +      -
    156G  ARG*     2.9    34.6    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLU 102 (chain G). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     37G  MET*     3.8    16.2    -      -       +      -
     89G  ASP*     4.2    14.9    -      -       -      +
     90G  GLU*     5.6     2.0    -      -       -      +
     93G  TRP*     3.8    22.8    -      -       +      -
     98G  ASN*     2.8    39.6    +      -       -      +
     99G  ALA      3.7     3.8    -      -       -      +
    101G  GLU*     1.3    74.6    -      -       -      +
    103G  ALA*     1.3    59.2    +      -       -      +
    105G  GLU*     3.3    19.9    +      -       -      +
    106G  LEU*     2.8    29.8    +      -       -      +
----------------------------------------------------------
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Residues in contact with ALA 103 (chain G). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     34G  TYR*     3.9    25.6    -      -       +      +
     37G  MET*     4.0     7.1    -      -       -      +
     55G  PHE*     4.2     7.0    -      -       +      -
     99G  ALA      2.9    16.6    +      -       -      +
    100G  MET      3.6     4.7    -      -       -      +
    101G  GLU      3.3     0.2    -      -       -      -
    102G  GLU*     1.3    75.2    -      -       -      +
    104G  LEU*     1.3    57.0    +      -       -      +
    106G  LEU*     3.2     7.2    +      -       -      +
    107G  GLU*     2.8    33.8    +      -       -      +
    148G  LEU*     3.7    19.7    -      -       +      -
----------------------------------------------------------
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Residues in contact with LEU 104 (chain G). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    100G  MET      2.9    13.6    +      -       -      +
    101G  GLU*     3.5    13.5    -      -       +      +
    103G  ALA*     1.3    76.5    -      -       -      +
    105G  GLU*     1.3    62.4    +      -       -      +
    107G  GLU*     3.2     2.4    +      -       -      +
    108G  LYS*     3.0    40.1    +      -       +      +
    145G  ILE*     3.8    41.1    -      -       +      +
    148G  LEU*     3.8    13.4    -      -       +      +
    149G  GLY*     4.3    13.5    -      -       -      +
    152G  VAL*     4.6    19.1    -      -       +      -
    156G  ARG*     6.1     1.3    -      -       -      +
----------------------------------------------------------
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Residues in contact with GLU 105 (chain G). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     14A  GLN*     4.3    17.8    +      -       -      +
     89G  ASP*     5.6     0.9    -      -       -      +
    101G  GLU      3.1    11.9    +      -       -      +
    102G  GLU*     3.6    23.2    -      -       -      +
    104G  LEU*     1.3    81.0    -      -       -      +
    106G  LEU*     1.3    62.3    +      -       -      +
    108G  LYS*     3.3     7.1    +      -       -      +
    109G  ASN*     2.9    43.3    +      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 106 (chain G). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     26G  LEU*     5.4     1.3    -      -       +      -
     29G  TYR*     3.9    31.0    -      -       +      +
     30G  ALA*     4.0    22.4    -      -       +      -
     33G  VAL*     4.0    26.2    -      -       +      -
     34G  TYR*     4.2    23.3    -      -       +      +
    102G  GLU      2.8    13.3    +      -       -      +
    103G  ALA*     3.4     8.1    -      -       -      +
    105G  GLU*     1.3    77.5    -      -       -      +
    107G  GLU*     1.3    65.1    +      -       -      +
    109G  ASN*     3.1    12.9    +      -       +      +
    110G  VAL*     3.0    36.9    +      -       +      +
----------------------------------------------------------
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Residues in contact with GLU 107 (chain G). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     30G  ALA*     5.2     0.2    -      -       -      +
     34G  TYR*     2.6    43.8    +      -       +      +
     58G  GLN*     5.6     0.5    -      -       -      +
     62G  GLU*     3.2    16.2    -      -       -      +
    103G  ALA      2.8    17.5    +      -       -      +
    104G  LEU      3.2     2.0    +      -       -      +
    106G  LEU*     1.3    80.6    -      -       -      +
    108G  LYS*     1.3    58.1    +      -       -      +
    110G  VAL*     4.5     6.0    -      -       -      +
    111G  ASN*     2.9    25.3    +      -       -      +
    141G  GLN*     2.7    44.5    +      -       -      +
    144G  ALA*     4.3    14.2    -      -       +      +
    145G  ILE*     3.8    21.9    -      -       +      +
    148G  LEU*     3.6    13.5    -      -       +      -
----------------------------------------------------------
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Residues in contact with LYS 108 (chain G). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    104G  LEU*     3.0    35.2    +      -       +      +
    105G  GLU*     3.8     6.3    -      -       -      +
    107G  GLU*     1.3    76.6    -      -       -      +
    109G  ASN*     1.3    61.2    +      -       -      +
    111G  ASN*     3.6     3.5    -      -       -      +
    112G  GLN*     2.9    27.7    +      -       -      +
    145G  ILE*     3.9    31.4    -      -       +      -
----------------------------------------------------------
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Residues in contact with ASN 109 (chain G). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     14A  GLN*     4.7    11.5    -      -       -      +
     26G  LEU*     4.7     5.5    -      -       +      +
    105G  GLU*     2.9    41.1    +      -       -      +
    106G  LEU*     3.1    14.9    +      -       +      +
    108G  LYS*     1.3    80.2    -      -       -      +
    110G  VAL*     1.3    60.9    +      -       +      +
    112G  GLN*     3.2     8.6    +      -       -      +
    113G  SER*     3.1    20.8    +      -       -      -
----------------------------------------------------------
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Residues in contact with VAL 110 (chain G). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     23G  GLN*     3.8     8.1    -      -       -      +
     26G  LEU*     4.0    25.4    -      -       +      +
     27G  GLU*     3.6    27.4    -      -       -      +
     30G  ALA*     4.6    11.4    -      -       +      -
     62G  GLU*     6.3     0.2    -      -       -      -
    106G  LEU*     3.0    37.2    +      -       +      +
    107G  GLU*     3.8     8.7    -      -       -      +
    109G  ASN*     1.3    70.9    -      -       +      +
    111G  ASN*     1.3    65.5    +      -       -      +
    113G  SER*     3.1     4.3    +      -       -      -
    114G  LEU*     3.0    23.9    +      -       +      +
    141G  GLN*     3.8    20.6    -      -       -      +
    201G   FE      4.5     2.5    -      -       -      -
----------------------------------------------------------
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Residues in contact with ASN 111 (chain G). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    107G  GLU      2.9    19.8    +      -       -      +
    108G  LYS*     3.6     5.6    -      -       -      +
    109G  ASN      3.2     0.2    -      -       -      -
    110G  VAL*     1.3    73.9    -      -       -      +
    112G  GLN*     1.3    66.2    +      -       -      +
    114G  LEU*     3.1     3.2    +      -       -      +
    115G  LEU*     2.8    48.4    +      -       -      +
    138G  LEU*     4.3    13.3    -      -       -      +
    141G  GLN*     3.5    28.7    -      -       +      +
    142G  VAL*     4.9    10.4    -      -       -      +
    145G  ILE*     3.9    19.7    -      -       +      +
----------------------------------------------------------
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Residues in contact with GLN 112 (chain G). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    108G  LYS      2.9    15.0    +      -       -      +
    109G  ASN*     3.2    11.0    +      -       -      +
    111G  ASN*     1.3    75.8    -      -       -      +
    113G  SER*     1.3    58.1    +      -       -      +
    115G  LEU*     3.3    16.1    +      -       -      +
    116G  GLU*     2.9    65.7    +      -       -      +
----------------------------------------------------------
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Residues in contact with SER 113 (chain G). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     22G  ARG*     5.9     0.7    -      -       -      +
     23G  GLN*     2.7    22.3    +      -       -      -
     26G  LEU*     3.5    28.8    -      -       -      +
    109G  ASN      3.1     9.6    +      -       -      -
    110G  VAL      3.5     3.4    -      -       -      -
    111G  ASN      3.1     0.2    -      -       -      -
    112G  GLN*     1.3    78.0    -      -       -      +
    114G  LEU*     1.3    56.3    +      -       -      +
    116G  GLU*     3.3    12.2    +      -       -      +
    117G  LEU*     2.9    28.2    +      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 114 (chain G). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     23G  GLN*     3.5    30.3    -      -       +      +
     27G  GLU*     4.6     0.2    -      -       -      +
     69G  LEU*     5.7     1.1    -      -       +      -
    110G  VAL*     3.0    21.6    +      -       +      +
    111G  ASN*     3.1     6.0    +      -       -      +
    113G  SER*     1.3    75.5    -      -       -      +
    115G  LEU*     1.3    59.2    +      -       -      +
    117G  LEU*     3.2    15.6    +      -       +      +
    118G  HIS*     2.8    29.3    +      -       -      +
    133G  ILE*     4.2     8.6    -      -       +      +
    137G  TYR*     3.8    41.1    -      -       +      +
    138G  LEU*     3.9    15.0    -      -       +      -
    141G  GLN*     3.4    36.8    -      -       +      +
----------------------------------------------------------
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Residues in contact with LEU 115 (chain G). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    111G  ASN*     2.8    42.1    +      -       -      +
    112G  GLN*     3.7    19.5    -      -       -      +
    114G  LEU*     1.3    78.3    -      -       -      +
    116G  GLU*     1.3    56.0    +      -       -      +
    118G  HIS*     3.5     7.4    +      -       +      +
    119G  LYS*     3.0    27.2    +      -       -      +
    138G  LEU*     4.2    26.5    -      -       +      -
----------------------------------------------------------
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Residues in contact with GLU 116 (chain G). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    112G  GLN*     2.9    52.1    +      -       -      +
    113G  SER*     3.7     9.5    -      -       -      +
    115G  LEU*     1.3    75.2    -      -       -      +
    117G  LEU*     1.3    59.6    +      -       -      +
    119G  LYS*     3.3    14.5    +      -       +      +
    120G  LEU*     3.0    28.6    +      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 117 (chain G). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     16G  SER      4.7     1.3    -      -       -      +
     19G  ALA*     3.3    41.7    -      -       +      +
     20G  ILE*     4.0    25.1    -      -       +      +
     23G  GLN*     4.4    24.9    -      -       +      +
     69G  LEU*     5.3     2.0    -      -       +      -
    113G  SER      2.9    14.5    +      -       -      +
    114G  LEU*     3.4    15.3    -      -       +      +
    116G  GLU*     1.3    77.8    -      -       -      +
    118G  HIS*     1.3    57.4    +      -       -      +
    120G  LEU*     3.2     9.3    +      -       +      +
    121G  ALA*     2.9    28.2    +      -       -      +
    129G  LEU*     5.4     5.6    -      -       +      +
    133G  ILE*     3.6    24.9    -      -       +      -
----------------------------------------------------------
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Residues in contact with HIS 118 (chain G). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    114G  LEU      2.8    19.3    +      -       -      +
    115G  LEU*     3.8    10.3    -      -       +      +
    116G  GLU      3.3     0.2    -      -       -      -
    117G  LEU*     1.3    72.9    -      -       -      +
    119G  LYS*     1.4    60.1    +      -       -      +
    121G  ALA*     3.2     3.1    +      -       -      +
    122G  THR*     2.9    51.0    +      -       -      -
    130G  CYS*     3.6    31.5    +      -       -      +
    133G  ILE*     3.8    21.2    -      -       +      +
    134G  GLU*     2.6    36.0    +      -       +      +
    138G  LEU*     4.4     9.6    -      -       +      -
----------------------------------------------------------
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Residues in contact with LYS 119 (chain G). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    115G  LEU      3.0    18.1    +      -       -      +
    116G  GLU*     3.7    12.3    -      -       +      +
    117G  LEU      3.3     0.4    -      -       -      -
    118G  HIS*     1.4    77.5    +      -       -      +
    120G  LEU*     1.3    60.0    +      -       -      +
    122G  THR*     3.3     8.5    +      -       +      -
    123G  ASP*     3.0    53.4    +      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 120 (chain G). Click here for Legend to table.
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                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     15G  ASP*     3.6    39.7    -      -       +      +
     16G  SER*     3.9    10.1    -      -       -      +
     19G  ALA*     3.7    19.1    -      -       +      -
     22G  ARG*     5.4     2.9    -      -       -      +
    116G  GLU      3.0    14.2    +      -       -      +
    117G  LEU*     3.5     9.9    -      -       +      +
    119G  LYS*     1.3    76.4    -      -       -      +
    121G  ALA*     1.3    60.0    +      -       -      +
    123G  ASP*     3.1     9.8    +      -       +      +
    124G  LYS*     2.9    58.0    +      -       +      +
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Residues in contact with ALA 121 (chain G). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     16G  SER*     4.7     1.8    -      -       -      -
    117G  LEU      2.9    17.0    +      -       -      +
    118G  HIS*     3.6     7.2    -      -       -      +
    120G  LEU*     1.3    76.4    -      -       -      +
    122G  THR*     1.3    60.4    +      -       -      +
    124G  LYS*     3.5     4.2    +      -       -      +
    125G  ASN      3.2     3.8    +      -       -      -
    126G  ASP*     2.9    32.8    +      -       -      +
    129G  LEU*     3.8    36.3    -      -       +      -
    130G  CYS*     3.8    18.2    -      -       -      +
    133G  ILE*     4.6     0.2    -      -       +      -
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Residues in contact with THR 122 (chain G). Click here for Legend to table.
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                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    118G  HIS*     2.9    43.7    +      -       -      -
    119G  LYS*     3.5     9.8    -      -       +      +
    120G  LEU      3.2     0.2    -      -       -      -
    121G  ALA*     1.3    77.2    -      -       -      +
    123G  ASP*     1.3    64.7    +      -       -      +
    125G  ASN*     3.0    26.4    +      -       -      +
    130G  CYS*     3.5     8.6    -      -       -      -
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Residues in contact with ASP 123 (chain G). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    119G  LYS*     3.0    47.0    +      -       -      +
    120G  LEU*     3.6    10.4    -      -       +      +
    122G  THR*     1.3    81.8    -      -       -      +
    124G  LYS*     1.3    68.0    +      -       +      +
    125G  ASN*     3.3    11.8    +      -       -      -
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Residues in contact with LYS 124 (chain G). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     11G  ASN*     4.4     7.8    -      -       -      +
     13G  HIS*     3.5    58.8    +      -       +      +
     15G  ASP*     3.8    13.7    +      -       +      -
     16G  SER*     4.2     8.5    -      -       -      +
    120G  LEU*     2.9    36.6    +      -       +      +
    121G  ALA*     4.1     3.4    -      -       -      +
    122G  THR      3.2     0.2    -      -       -      -
    123G  ASP*     1.3    83.2    -      -       -      +
    125G  ASN*     1.3    73.1    +      -       -      +
    126G  ASP*     3.3     6.9    +      -       +      +
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A short description of the analytical approach
The contact analysis used in this page is based upon the approach developed in: Sobolev V., Wade R.C., Vriend G. and Edelman M. PROTEINS (1996) 25, 120-129. Contact legitimacy depends on the hydrophobic-hydrophilic properties of the contacting atoms. In order to define it, for each inter-atomic contact, eight atom classes have been introduced:


   I  Hydrophilic      - N and O that can donate and accept hydrogen bonds
                         (e.g., oxygen of hydroxyl group of Ser. or Thr)
  II  Acceptor         - N or O that can only accept a hydrogen bond
 III  Donor            - N that can only donate a hydrogen bond
  IV  Hydrophobic      - Cl, Br, I and all C atoms that are not in
                         aromatic rings and do not have a covalent bond to
                         a N or O atom
   V  Aromatic         - C in aromatic rings irrespective of any other 
                         bonds formed by the atom
  VI  Neutral          - C atoms that have a covalent bond to at least one
                         atom of class I or two or more atoms from class II
                         or III; atoms; S, F, P, and metal atoms in all cases
 VII  Neutral-donor    - C atoms that have a covalent bond with only one
                         atom of class III
VIII  Neutral-acceptor - C atoms that have a covalent bond with only 
                         one atom of class II
For each pair of contacts the state of legitimacy is shown below:

Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
  Atomic class           I  II  III   IV   V   VI  VII  VIII
------------------------------------------------------------
   I  (Hydrophilic)      +   +    +    -   +   +    +    +
  II  (Acceptor)         +   -    +    -   +   +    +    -
 III  (Donor)            +   +    -    -   +   +    -    +
  IV  (Hydrophobic)      -   -    -    +   +   +    +    +
   V  (Aromatic)         +   +    +    +   +   +    +    +
  VI  (Neutral)          +   +    +    +   +   +    +    +
 VII  (Neutral-donor)    +   +    -    +   +   +    -    +
VIII  (Neutral-acceptor) +   -    +    +   +   +    +    -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically assigned based on the atomic coordinates. However, in three cases (see below) the automatic assignment is currently ambiguous. In these cases, the user is advised to manually analyse the full list of contacts using LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are 
   considered "aromatic" (Class V) if the ring is approximately
   planar, and "hydrophobic" (Class IV) or "neutral" (Classes
   VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
   "hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
   "carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).

Please E-mail any questions and/or suggestions concerning this page to Vladimir.Sobolev@weizmann.ac.il