Contacts of the helix formed by residues 688 - 766 (chain N) in PDB entry 5KHU
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with PRO 688 (chain N).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
687N MET* 3.8 29.2 - - - -
689N VAL* 3.8 28.9 - - - -
----------------------------------------------------------
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Residues in contact with VAL 689 (chain N).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
688N PRO* 3.8 29.6 - - - -
690N ALA* 3.8 26.7 - - - +
----------------------------------------------------------
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Residues in contact with ALA 690 (chain N).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
689N VAL* 3.8 26.7 - - - +
691N LEU* 3.8 29.2 - - - +
----------------------------------------------------------
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Residues in contact with LEU 691 (chain N).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
690N ALA* 3.8 29.2 - - - +
692N LEU* 3.8 25.8 - - - +
----------------------------------------------------------
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Residues in contact with LEU 692 (chain N).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
691N LEU* 3.8 25.6 - - - +
693N ARG* 3.8 28.7 - - - +
----------------------------------------------------------
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Residues in contact with ARG 693 (chain N).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
692N LEU* 3.8 28.9 - - - +
694N ARG* 3.8 24.9 - - - +
696N MET* 4.4 16.8 - - - +
----------------------------------------------------------
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Residues in contact with ARG 694 (chain N).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
693N ARG* 3.8 24.9 - - - +
695N ARG* 3.8 29.4 - - - +
697N SER* 4.6 13.2 - - - +
----------------------------------------------------------
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Residues in contact with ARG 695 (chain N).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
694N ARG* 3.8 28.7 - - - +
696N MET* 3.8 26.0 - - - +
698N VAL* 4.6 16.2 - - - +
----------------------------------------------------------
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Residues in contact with MET 696 (chain N).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
693N ARG* 4.4 16.4 - - - +
695N ARG* 3.8 28.9 - - - +
697N SER* 3.8 24.5 - - - +
----------------------------------------------------------
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Residues in contact with SER 697 (chain N).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
694N ARG* 4.6 15.9 - - - +
696N MET* 3.8 29.4 - - - +
698N VAL* 3.8 25.1 - - - +
----------------------------------------------------------
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Residues in contact with VAL 698 (chain N).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
695N ARG* 4.6 15.5 - - - +
697N SER* 3.8 26.0 - - - +
699N TRP* 3.8 28.5 - - - +
----------------------------------------------------------
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Residues in contact with TRP 699 (chain N).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
698N VAL* 3.8 27.8 - - - +
700N LEU* 3.8 28.9 - - - +
----------------------------------------------------------
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Residues in contact with LEU 700 (chain N).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
699N TRP* 3.8 28.7 - - - +
701N GLN* 3.8 27.4 - - - +
703N GLY* 4.6 15.0 - - - +
----------------------------------------------------------
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Residues in contact with GLN 701 (chain N).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
700N LEU* 3.8 24.0 - - - +
702N GLN* 3.8 29.2 - - - +
----------------------------------------------------------
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Residues in contact with GLN 702 (chain N).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
701N GLN* 3.8 26.0 - - - +
703N GLY* 3.8 28.9 - - - +
----------------------------------------------------------
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Residues in contact with GLY 703 (chain N).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
700N LEU* 4.6 17.0 - - - +
702N GLN* 3.8 29.4 - - - +
----------------------------------------------------------
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Residues in contact with LEU 751 (chain N).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
752N LEU* 3.8 29.6 - - - +
----------------------------------------------------------
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Residues in contact with LEU 752 (chain N).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
751N LEU* 3.8 27.6 - - - +
753N LEU* 3.8 28.7 - - - +
----------------------------------------------------------
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Residues in contact with LEU 753 (chain N).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
752N LEU* 3.8 26.0 - - - +
754N PHE* 3.8 28.5 - - - +
----------------------------------------------------------
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Residues in contact with PHE 754 (chain N).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
753N LEU* 3.8 25.1 - - - +
755N TRP* 3.8 29.6 - - - +
----------------------------------------------------------
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Residues in contact with TRP 755 (chain N).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
754N PHE* 3.8 26.7 - - - +
756N THR* 3.8 28.9 - - - +
----------------------------------------------------------
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Residues in contact with THR 756 (chain N).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
755N TRP* 3.8 28.9 - - - +
757N TYR* 3.8 25.4 - - - +
----------------------------------------------------------
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Residues in contact with TYR 757 (chain N).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
756N THR* 3.8 29.4 - - - +
758N ILE* 3.8 28.0 - - - +
----------------------------------------------------------
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Residues in contact with ILE 758 (chain N).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
757N TYR* 3.8 26.5 - - - +
759N GLN* 3.8 28.3 - - - +
----------------------------------------------------------
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Residues in contact with GLN 759 (chain N).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
758N ILE* 3.8 25.8 - - - +
760N ALA* 3.8 28.7 - - - +
----------------------------------------------------------
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Residues in contact with ALA 760 (chain N).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
759N GLN* 3.8 29.2 - - - +
761N MET* 3.8 25.8 - - - +
----------------------------------------------------------
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Residues in contact with MET 761 (chain N).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
760N ALA* 3.8 29.2 - - - +
762N LEU* 3.8 25.6 - - - +
----------------------------------------------------------
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Residues in contact with LEU 762 (chain N).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
761N MET* 3.8 29.2 - - - +
763N THR* 3.8 25.4 - - - +
----------------------------------------------------------
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Residues in contact with THR 763 (chain N).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
762N LEU* 3.8 24.5 - - - +
764N ASN* 3.8 29.2 - - - +
----------------------------------------------------------
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Residues in contact with ASN 764 (chain N).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
763N THR* 3.8 28.0 - - - +
765N LEU* 3.8 29.8 - - - +
----------------------------------------------------------
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Residues in contact with LEU 765 (chain N).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
764N ASN* 3.8 29.4 - - - +
766N GLU* 3.8 27.8 - - - +
169Q ARG* 4.1 20.2 - - - +
----------------------------------------------------------
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Residues in contact with GLU 766 (chain N).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
765N LEU* 3.8 24.7 - - - +
767N SER* 3.8 29.2 - - - +
----------------------------------------------------------
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Residues in contact with SER 767 (chain N).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
766N GLU* 3.8 28.7 - - - +
768N LEU* 3.8 28.9 - - - +
816N ARG* 4.7 18.4 - - - +
----------------------------------------------------------
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Residues in contact with LEU 768 (chain N).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
767N SER* 3.8 28.7 - - - +
769N SER* 3.8 29.2 - - - +
----------------------------------------------------------
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Residues in contact with SER 769 (chain N).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
768N LEU* 3.8 24.2 - - - +
770N LEU* 3.8 28.7 - - - +
814N VAL* 3.6 31.9 - - - +
----------------------------------------------------------
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Residues in contact with LEU 770 (chain N).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
769N SER* 3.8 28.9 - - - +
771N ASP* 3.8 26.2 - - - +
----------------------------------------------------------
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Residues in contact with ASP 771 (chain N).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
770N LEU* 3.8 27.1 - - - +
772N ARG* 3.8 29.2 - - - +
774N TYR* 4.4 16.4 - - - +
----------------------------------------------------------
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Residues in contact with ARG 772 (chain N).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
771N ASP* 3.8 29.2 - - - +
773N ILE* 3.8 26.2 - - - +
775N ASN* 4.7 14.6 - - - +
----------------------------------------------------------
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Residues in contact with ILE 773 (chain N).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
772N ARG* 3.8 24.2 - - - +
774N TYR* 3.8 28.9 - - - +
776N MET* 4.4 17.5 - - - +
----------------------------------------------------------
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Residues in contact with TYR 774 (chain N).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
771N ASP* 4.4 18.2 - - - +
773N ILE* 3.8 28.9 - - - +
775N ASN* 3.8 25.6 - - - +
----------------------------------------------------------
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Residues in contact with ASN 775 (chain N).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
772N ARG* 4.7 12.6 - - - +
774N TYR* 3.8 26.2 - - - +
776N MET* 3.8 29.2 - - - +
----------------------------------------------------------
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Residues in contact with MET 776 (chain N).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
773N ILE* 4.4 17.3 - - - +
775N ASN* 3.8 25.1 - - - +
777N LEU* 3.8 29.2 - - - +
----------------------------------------------------------
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Residues in contact with LEU 777 (chain N).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
776N MET* 3.8 28.9 - - - +
778N ARG* 3.8 24.9 - - - +
----------------------------------------------------------
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Residues in contact with ARG 778 (chain N).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
777N LEU* 3.8 26.7 - - - +
779N MET* 3.8 28.9 - - - +
----------------------------------------------------------
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Residues in contact with MET 779 (chain N).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
778N ARG* 3.8 24.5 - - - +
780N PHE* 3.8 29.8 - - - +
----------------------------------------------------------
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Residues in contact with PHE 780 (chain N).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
779N MET* 3.8 29.8 - - - +
781N VAL* 3.8 27.4 - - - +
----------------------------------------------------------
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Residues in contact with VAL 781 (chain N).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
780N PHE* 3.8 29.6 - - - +
782N VAL* 3.8 24.5 - - - +
----------------------------------------------------------
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Residues in contact with VAL 782 (chain N).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
781N VAL* 3.8 29.6 - - - +
783N THR* 3.8 26.5 - - - +
----------------------------------------------------------
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Residues in contact with THR 783 (chain N).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
782N VAL* 3.8 24.2 - - - +
784N GLY* 3.0 36.6 - - - +
----------------------------------------------------------
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Residues in contact with GLY 784 (chain N).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
783N THR* 3.0 36.6 - - - +
785N PRO* 3.8 28.5 - - - -
----------------------------------------------------------
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Residues in contact with PRO 785 (chain N).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
784N GLY* 3.8 26.2 - - - -
786N ALA* 3.8 29.2 - - - -
----------------------------------------------------------
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Residues in contact with ALA 786 (chain N).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
785N PRO* 3.8 29.2 - - - -
787N LEU* 3.8 24.9 - - - +
----------------------------------------------------------
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Residues in contact with LEU 787 (chain N).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
786N ALA* 3.8 26.2 - - - +
788N ALA* 3.8 29.4 - - - +
----------------------------------------------------------
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Residues in contact with ALA 788 (chain N).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
787N LEU* 3.8 28.9 - - - +
789N GLU* 3.8 24.9 - - - +
----------------------------------------------------------
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Residues in contact with GLU 789 (chain N).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
788N ALA* 3.8 29.2 - - - +
790N ILE* 3.8 25.1 - - - +
----------------------------------------------------------
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Residues in contact with ILE 790 (chain N).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
789N GLU* 3.8 28.0 - - - +
791N ASP* 3.8 29.2 - - - +
----------------------------------------------------------
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Residues in contact with ASP 791 (chain N).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
790N ILE* 3.8 29.2 - - - +
792N LEU* 3.8 29.4 - - - +
----------------------------------------------------------
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Residues in contact with LEU 792 (chain N).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
791N ASP* 3.8 26.9 - - - +
793N GLN* 3.8 29.2 - - - +
795N LEU* 4.6 13.7 - - - +
----------------------------------------------------------
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Residues in contact with GLN 793 (chain N).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
792N LEU* 3.8 29.2 - - - +
794N GLU* 3.8 26.0 - - - +
796N GLN* 4.6 16.2 - - - +
----------------------------------------------------------
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Residues in contact with GLU 794 (chain N).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
793N GLN* 3.8 24.7 - - - +
795N LEU* 3.8 28.9 - - - +
----------------------------------------------------------
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Residues in contact with LEU 795 (chain N).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
792N LEU* 4.6 15.0 - - - +
794N GLU* 3.8 29.2 - - - +
796N GLN* 3.8 27.1 - - - +
----------------------------------------------------------
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Residues in contact with GLN 796 (chain N).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
793N GLN* 4.6 15.9 - - - +
795N LEU* 3.8 26.5 - - - +
797N GLY* 3.8 29.4 - - - +
----------------------------------------------------------
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Residues in contact with GLY 797 (chain N).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
796N GLN* 3.8 28.7 - - - +
798N TYR* 3.8 26.9 - - - +
800N GLN* 4.5 17.0 - - - +
----------------------------------------------------------
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Residues in contact with TYR 798 (chain N).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
797N GLY* 3.8 26.0 - - - +
799N LEU* 3.8 29.6 - - - +
801N LYS* 4.6 13.0 - - - +
----------------------------------------------------------
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Residues in contact with LEU 799 (chain N).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
798N TYR* 3.8 29.4 - - - +
800N GLN* 3.8 25.8 - - - +
802N LYS* 4.5 17.3 - - - +
----------------------------------------------------------
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Residues in contact with GLN 800 (chain N).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
797N GLY* 4.5 16.2 - - - +
799N LEU* 3.8 29.4 - - - +
801N LYS* 3.8 23.8 - - - +
803N VAL* 4.6 16.2 - - - +
----------------------------------------------------------
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Residues in contact with LYS 801 (chain N).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
798N TYR* 4.6 15.9 - - - +
800N GLN* 3.8 29.4 - - - +
802N LYS* 3.8 25.4 - - - +
----------------------------------------------------------
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Residues in contact with LYS 802 (chain N).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
799N LEU* 4.5 14.6 - - - +
801N LYS* 3.8 28.9 - - - +
803N VAL* 3.8 26.7 - - - +
805N ASP* 4.6 15.9 - - - +
----------------------------------------------------------
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Residues in contact with VAL 803 (chain N).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
800N GLN* 4.6 15.3 - - - +
802N LYS* 3.8 25.6 - - - +
804N ARG* 3.8 29.4 - - - +
808N LEU* 4.0 23.6 - - - +
----------------------------------------------------------
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Residues in contact with ARG 804 (chain N).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
803N VAL* 3.8 26.0 - - - +
805N ASP* 3.8 29.4 - - - +
----------------------------------------------------------
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Residues in contact with ASP 805 (chain N).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
802N LYS* 4.6 16.6 - - - +
804N ARG* 3.8 29.2 - - - +
806N GLN* 3.8 23.6 - - - +
----------------------------------------------------------
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Residues in contact with GLN 806 (chain N).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
805N ASP* 3.8 23.8 - - - +
807N GLN* 3.8 29.2 - - - +
----------------------------------------------------------
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Residues in contact with GLN 807 (chain N).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
806N GLN* 3.8 29.2 - - - +
808N LEU* 3.8 24.5 - - - +
----------------------------------------------------------
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Residues in contact with LEU 808 (chain N).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
803N VAL* 4.0 20.6 - - - +
807N GLN* 3.8 29.2 - - - +
809N VAL* 3.8 29.4 - - - +
----------------------------------------------------------
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Residues in contact with VAL 809 (chain N).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
808N LEU* 3.8 28.5 - - - +
810N TYR* 3.8 28.7 - - - +
----------------------------------------------------------
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Residues in contact with TYR 810 (chain N).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
809N VAL* 3.8 28.7 - - - +
811N GLU* 3.8 29.8 - - - +
815N TYR* 4.5 18.2 - - - +
----------------------------------------------------------
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Residues in contact with GLU 811 (chain N).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
810N TYR* 3.8 28.9 - - - +
812N ALA* 3.8 28.9 - - - +
----------------------------------------------------------
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Residues in contact with ALA 812 (chain N).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
811N GLU* 3.8 26.0 - - - +
813N GLY* 3.8 29.2 - - - +
----------------------------------------------------------
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Residues in contact with GLY 813 (chain N).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
812N ALA* 3.8 29.4 - - - +
814N VAL* 3.8 25.8 - - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il