Contacts of the helix formed by residues 244 - 282 (chain C) in PDB entry 5L26
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ASN 244 (chain C).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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369B LEU* 2.7 52.1 + - - +
372B ILE* 5.2 2.4 - - - +
373B ALA* 4.7 1.6 - - - +
117C TYR* 3.2 15.7 - - - -
242C PRO* 3.9 2.8 - - - +
243C THR* 1.3 87.5 - - + +
245C VAL* 1.3 67.7 + - + +
246C ILE* 3.8 13.9 - - - +
247C ASP* 3.1 26.8 + - - +
248C ALA* 3.1 12.6 + - - +
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Residues in contact with VAL 245 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
369B LEU* 6.5 0.4 - - + -
114C VAL* 4.2 27.8 - - + +
117C TYR* 3.6 30.9 - - + -
118C ILE* 5.6 2.9 - - + -
244C ASN* 1.3 77.2 - - + +
246C ILE* 1.3 77.8 + - + +
248C ALA* 3.3 2.9 + - - +
249C ALA* 3.0 28.0 + - + +
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Residues in contact with ILE 246 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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270B PHE* 3.6 29.4 - - + -
329B VAL 3.3 26.2 - - - +
330B ILE* 4.4 18.4 - - + +
369B LEU* 4.3 9.2 - - + -
370B GLY* 3.6 21.8 - - - +
244C ASN* 3.2 19.2 - - - +
245C VAL* 1.3 92.2 - - + +
247C ASP* 1.3 58.2 + - - +
249C ALA* 3.5 4.0 + - + -
250C ALA* 3.0 29.2 + - + +
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Residues in contact with ASP 247 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
370B GLY* 4.9 4.4 - - - +
373B ALA* 3.6 27.1 - - + -
242C PRO* 4.4 4.5 - - + -
243C THR 4.0 7.0 - - - +
244C ASN* 3.1 30.1 + - - +
246C ILE* 1.3 81.1 - - - +
248C ALA* 1.3 54.6 + - - +
250C ALA* 3.5 5.0 + - - +
251C SER* 2.6 39.3 + - - +
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Residues in contact with ALA 248 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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113C ALA* 3.4 33.0 - - + +
114C VAL* 4.9 1.3 - - - +
117C TYR* 4.1 15.7 - - + -
242C PRO* 4.0 22.8 - - + +
244C ASN 3.1 12.5 + - - +
245C VAL 3.3 8.0 + - - +
247C ASP* 1.3 74.2 - - - +
249C ALA* 1.3 59.2 + - - +
251C SER* 3.9 3.6 - - - -
252C GLY 3.0 23.9 + - - -
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Residues in contact with ALA 249 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
269B ALA* 4.3 0.9 - - - +
270B PHE* 3.8 16.8 - - + -
273B LEU* 3.7 30.1 - - + -
110C SER* 3.2 23.1 - - - -
114C VAL* 3.8 7.6 - - + +
245C VAL* 3.0 17.1 + - + +
246C ILE* 3.9 2.5 - - + +
248C ALA* 1.3 76.0 - - - +
250C ALA* 1.3 63.5 + - - +
253C ALA* 3.1 18.9 + - - +
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Residues in contact with ALA 250 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
266B SER* 3.9 15.6 + - - +
270B PHE* 3.7 18.3 - - + -
246C ILE* 3.0 19.5 + - + +
247C ASP* 3.9 5.2 - - - +
249C ALA* 1.3 75.3 - - - +
251C SER* 1.3 64.1 + - - +
253C ALA* 3.1 5.7 + - - +
254C VAL* 3.1 29.7 + - + +
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Residues in contact with SER 251 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
242C PRO* 5.8 3.6 - - - +
247C ASP* 2.6 25.4 + - - +
248C ALA* 3.9 5.8 - - - -
250C ALA* 1.3 75.7 - - - +
252C GLY* 1.3 60.6 + - - +
254C VAL* 3.4 8.0 + - - +
255C THR* 3.0 30.4 + - - -
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Residues in contact with GLY 252 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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109C SER* 3.2 30.4 - - - -
110C SER* 3.8 9.2 - - - -
113C ALA* 4.0 5.1 - - - +
248C ALA 3.0 17.4 + - - -
251C SER* 1.3 76.9 - - - +
253C ALA* 1.3 56.1 + - - +
255C THR* 3.9 5.6 - - - -
256C GLY 3.0 22.3 + - - -
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Residues in contact with ALA 253 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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265B ALA* 3.3 32.8 - - - +
266B SER* 4.0 4.0 - - - -
269B ALA* 3.7 13.9 - - + -
106C VAL* 3.3 18.4 - - + +
110C SER* 3.8 0.4 - - - -
249C ALA 3.1 13.3 + - - +
250C ALA 3.1 10.4 + - - +
252C GLY* 1.3 75.2 - - - +
254C VAL* 1.3 60.5 + - - +
256C GLY 3.3 0.3 + - - -
257C ALA* 2.8 29.8 + - - +
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Residues in contact with VAL 254 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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262B ALA* 4.0 40.2 - - + +
265B ALA* 4.6 1.6 - - - -
266B SER* 4.3 3.8 - - - +
250C ALA* 3.1 16.9 + - + +
251C SER* 3.8 8.1 - - - +
253C ALA* 1.3 73.2 - - - +
255C THR* 1.3 65.9 + - - +
257C ALA* 3.2 8.4 + - + +
258C GLN* 3.1 32.8 + - - +
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Residues in contact with THR 255 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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109C SER* 5.4 2.2 - - - -
156C GLU* 4.2 13.0 - - - +
251C SER* 3.0 18.5 + - - -
252C GLY* 3.9 6.7 - - - -
254C VAL* 1.3 79.0 - - - +
256C GLY* 1.3 56.6 + - - +
258C GLN* 3.2 20.4 + - - +
259C ILE* 3.0 50.5 + - + +
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Residues in contact with GLY 256 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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105C ILE* 3.8 8.3 - - - +
106C VAL* 3.8 7.7 - - - +
109C SER* 3.6 27.1 - - - -
252C GLY 3.0 12.4 + - - -
253C ALA 3.7 2.0 - - - -
255C THR* 1.3 76.9 - - - +
257C ALA* 1.3 57.1 + - - +
259C ILE* 3.6 8.2 - - - +
260C ALA* 2.9 30.7 + - - +
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Residues in contact with ALA 257 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
261B ILE* 4.3 17.5 - - + -
265B ALA* 3.7 21.3 - - + -
106C VAL* 3.7 12.3 - - + +
253C ALA 2.8 17.5 + - - +
254C VAL* 3.3 8.5 - - + +
256C GLY* 1.3 77.6 - - - +
258C GLN* 1.3 57.7 + - - +
260C ALA* 3.1 5.8 + - - +
261C ILE* 2.9 33.2 + - - +
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Residues in contact with GLN 258 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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261B ILE* 5.6 0.6 - - - +
254C VAL* 3.1 19.9 + - + +
255C THR* 3.2 28.9 + - - +
257C ALA* 1.3 75.5 - - - +
259C ILE* 1.3 66.9 + - + +
261C ILE* 3.5 17.2 - - + +
262C ALA* 3.1 22.3 + - - +
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Residues in contact with ILE 259 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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105C ILE* 3.9 17.9 - - + -
109C SER* 5.0 5.2 - - - +
156C GLU* 4.4 11.9 - - - +
255C THR* 3.0 44.2 + - + +
256C GLY* 3.6 7.6 - - - +
258C GLN* 1.3 78.6 - - + +
260C ALA* 1.3 60.5 + - - +
262C ALA* 3.1 7.6 + - - +
263C VAL* 2.9 40.9 + - + +
503C URI 4.8 23.6 - - + +
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Residues in contact with ALA 260 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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102C LEU* 3.6 48.4 - - + +
105C ILE* 4.1 15.9 - - + -
106C VAL* 4.4 4.9 - - + -
256C GLY 2.9 18.1 + - - +
257C ALA 3.1 5.8 + - - +
259C ILE* 1.3 76.0 - - - +
261C ILE* 1.3 57.9 + - + +
263C VAL* 4.4 0.7 - - - -
264C GLY 3.0 22.5 + - - -
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Residues in contact with ILE 261 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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254A VAL* 6.3 1.6 - - + -
257A ALA* 4.5 16.2 - - + -
258A GLN* 5.7 1.1 - - + +
261A ILE* 4.1 29.4 - - + -
261B ILE* 4.2 26.5 - - + -
102C LEU* 5.7 0.9 - - - -
257C ALA 2.9 20.0 + - - +
258C GLN* 3.5 17.0 - - + +
259C ILE 3.1 0.2 - - - -
260C ALA* 1.3 76.7 - - + +
262C ALA* 1.3 62.6 + - - +
264C GLY* 4.0 0.7 - - - -
265C ALA* 3.1 23.7 + - - +
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Residues in contact with ALA 262 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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254A VAL* 3.9 32.0 - - + +
258C GLN 3.1 10.3 + - - +
259C ILE* 3.1 10.1 + - - +
261C ILE* 1.3 80.6 - - - +
263C VAL* 1.3 58.7 + - + +
265C ALA* 4.0 2.1 - - - +
266C SER* 2.7 34.6 + - - +
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Residues in contact with VAL 263 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
102C LEU* 4.5 8.7 - - + -
105C ILE* 4.5 8.7 - - + -
188C VAL* 5.2 0.7 - - + -
259C ILE* 2.9 33.8 + - + +
260C ALA* 3.9 6.5 - - - +
262C ALA* 1.3 76.2 - - + +
264C GLY* 1.3 65.8 + - - +
266C SER* 3.1 8.3 + - - -
267C LEU* 3.0 40.6 + - + +
333C PHE* 4.1 28.3 - - + -
503C URI 4.3 28.3 - - + +
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Residues in contact with GLY 264 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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77A LEU* 3.8 20.5 - - - +
102C LEU* 4.1 20.8 - - - +
260C ALA 3.0 16.7 + - - -
261C ILE* 4.0 0.9 - - - -
263C VAL* 1.3 76.6 - - - +
265C ALA* 1.3 56.3 + - - +
267C LEU* 3.4 6.9 + - - +
268C LEU* 3.0 27.9 + - - +
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Residues in contact with ALA 265 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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77A LEU* 5.4 1.3 - - - -
106A VAL* 3.9 10.9 - - + +
253A ALA* 3.6 23.5 - - - +
254A VAL* 4.5 2.5 - - - +
257A ALA* 3.7 26.9 - - + -
261C ILE 3.1 18.4 + - - +
262C ALA 4.0 3.8 - - - +
264C GLY* 1.3 74.1 - - - +
266C SER* 1.3 65.6 + - - +
268C LEU* 3.4 6.1 + - - +
269C ALA* 3.1 18.0 + - - +
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Residues in contact with SER 266 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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250A ALA* 4.2 21.6 + - - +
253A ALA* 4.3 8.7 - - - +
254A VAL* 4.2 3.5 - - - +
262C ALA 2.7 24.5 + - - -
263C VAL* 3.1 7.6 + - - -
265C ALA* 1.3 77.0 - - - +
267C LEU* 1.3 58.6 + - - +
269C ALA* 3.5 2.0 + - - +
270C PHE* 2.8 54.3 + - - -
331C ASN* 5.3 1.3 - - - -
503C URI 6.5 1.3 - - - -
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Residues in contact with LEU 267 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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76A PHE* 4.1 21.3 - - + -
77A LEU* 5.3 1.1 - - + -
97C PHE* 3.7 35.7 - - + -
263C VAL* 3.0 28.0 + - + +
264C GLY* 3.7 7.2 - - - +
265C ALA 3.3 0.2 - - - -
266C SER* 1.3 74.8 - - - +
268C LEU* 1.3 57.4 + - - +
270C PHE* 4.4 2.2 - - - -
271C VAL* 2.8 41.1 + - + +
331C ASN* 3.5 27.8 - - - +
333C PHE* 3.6 35.0 - - + -
334C VAL* 4.2 7.9 - - + +
503C URI 6.2 0.7 - - - -
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Residues in contact with LEU 268 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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70A GLY 5.1 1.6 - - - +
73A GLY* 3.7 28.9 - - - +
74A VAL* 4.2 10.3 - - + +
76A PHE* 5.3 0.9 - - - -
77A LEU* 3.7 24.0 - - + +
78A PHE* 4.6 0.9 - - + -
103A PRO* 3.6 46.2 - - + +
106A VAL* 3.9 17.7 - - + -
107A PHE* 3.9 15.3 - - + +
264C GLY 3.0 16.8 + - - +
265C ALA* 3.7 6.1 - - - +
267C LEU* 1.3 75.1 - - - +
269C ALA* 1.3 62.7 + - - +
271C VAL* 4.9 0.2 - - - -
272C ALA* 3.2 24.9 + - - +
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Residues in contact with ALA 269 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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106A VAL* 5.2 0.2 - - + -
107A PHE* 4.6 5.2 - - - -
110A SER* 3.3 28.7 - - - +
249A ALA 4.6 2.7 - - - +
253A ALA* 3.7 15.0 - - + -
265C ALA 3.1 17.2 + - - +
266C SER 3.7 3.1 - - - +
268C LEU* 1.3 79.7 - - + +
270C PHE* 1.3 57.4 + - + +
272C ALA* 3.1 5.5 + - - +
273C LEU* 2.7 44.4 + - + +
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Residues in contact with PHE 270 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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246A ILE* 3.6 36.3 - - + -
249A ALA* 3.7 31.2 - - + -
250A ALA* 3.7 17.9 - - + -
503A 6ZL 6.0 1.6 - - + -
266C SER* 2.8 37.0 + - - +
267C LEU* 3.9 2.2 - - - +
269C ALA* 1.3 73.9 - - + +
271C VAL* 1.3 58.1 + - - +
273C LEU* 3.3 7.5 + - + +
274C ILE* 2.9 37.8 + - + +
330C ILE* 3.6 32.5 - - + -
331C ASN* 3.2 29.2 - - - -
334C VAL* 4.3 5.8 - - + -
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Residues in contact with VAL 271 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
72A ASN* 4.1 12.3 - - + +
73A GLY* 3.9 21.3 - - - +
76A PHE* 4.0 35.2 - - + -
267C LEU 2.8 24.4 + - - +
270C PHE* 1.3 71.6 - - - +
272C ALA* 1.3 61.6 - - - +
274C ILE* 3.4 10.0 + - - +
275C ALA* 3.1 21.9 + - + +
334C VAL* 4.4 20.4 - - + -
337C SER* 5.7 0.9 - - - +
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Residues in contact with ALA 272 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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69A TYR* 3.2 28.9 - - - +
70A GLY* 3.7 10.3 - - - +
73A GLY 4.2 3.4 - - - +
107A PHE* 3.5 26.6 - - + -
268C LEU 3.2 17.7 + - - +
269C ALA 3.1 1.2 + - - +
271C VAL* 1.3 77.2 - - - +
273C LEU* 1.3 60.5 + - - +
275C ALA* 3.4 4.5 + - - +
276C MET* 3.0 26.2 + - - +
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Residues in contact with LEU 273 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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107A PHE* 3.7 22.2 - - + -
110A SER* 4.5 7.9 - - - +
111A LEU* 4.1 27.4 - - + -
114A VAL* 4.3 8.3 - - + -
249A ALA* 3.7 29.6 - - + -
503A 6ZL 4.3 22.7 - - + -
269C ALA* 2.7 31.9 + - + +
270C PHE* 3.7 9.4 - - + +
272C ALA* 1.3 69.9 - - - +
274C ILE* 1.3 61.1 + - + +
276C MET* 3.2 9.6 + - - +
277C ILE* 3.0 35.3 + - - +
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Residues in contact with ILE 274 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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270C PHE 2.9 23.5 + - - +
271C VAL* 3.6 8.3 - - - +
273C LEU* 1.3 74.4 - - + +
275C ALA* 1.3 60.0 + - - +
277C ILE* 3.2 10.9 + - + +
278C ASN* 3.0 33.1 + - - +
295C LEU* 4.4 19.3 - - + -
296C GLN* 3.3 30.5 - - - +
326C GLN* 5.0 6.5 - - + +
330C ILE* 4.0 26.0 - - + -
334C VAL* 3.8 29.6 - - + -
338C GLU* 5.4 1.8 - - - +
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Residues in contact with ALA 275 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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69A TYR* 3.7 15.9 - - + +
72A ASN* 3.4 33.9 - - + +
271C VAL* 3.1 13.9 + - + +
272C ALA 3.7 7.6 - - - +
274C ILE* 1.3 78.2 - - - +
276C MET* 1.3 60.6 + - - +
278C ASN* 3.6 11.4 + - - +
279C GLY* 3.1 15.8 + - - -
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Residues in contact with MET 276 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
66A VAL* 4.3 14.1 - - + -
69A TYR* 3.6 30.0 - - + -
107A PHE* 4.4 14.8 - - + -
111A LEU* 3.9 31.6 - - + -
115A LEU* 6.2 0.4 - - + -
501A 6ZL 3.6 33.4 - - + -
272C ALA 3.0 13.5 + - - +
273C LEU* 3.4 15.5 - - - +
274C ILE 3.1 0.2 - - - -
275C ALA* 1.3 75.3 - - - +
277C ILE* 1.3 65.0 + - + +
279C GLY* 3.1 3.5 + - - -
280C ILE* 3.1 39.0 + - + +
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Residues in contact with ILE 277 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
503A 6ZL 3.3 42.2 - - + -
273C LEU 3.0 19.1 + - - +
274C ILE* 3.2 8.5 + - + +
276C MET* 1.3 77.3 - - + +
278C ASN* 1.3 57.6 + - - +
280C ILE* 3.0 15.3 + - + +
281C ILE* 2.9 47.1 + - + +
295C LEU* 4.4 29.8 - - + -
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Residues in contact with ASN 278 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
274C ILE* 3.0 25.9 + - - +
275C ALA* 3.8 9.0 - - - +
277C ILE* 1.3 75.4 - - - +
279C GLY* 1.3 56.6 + - - +
281C ILE* 4.0 6.4 - - - +
282C GLY* 3.2 22.3 + - - -
293C LEU 4.5 3.3 - - - +
294C THR* 3.8 17.0 - - + +
295C LEU* 2.6 36.6 + - - +
296C GLN* 3.0 31.7 + - - +
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Residues in contact with GLY 279 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
69A TYR* 3.5 25.6 - - - -
504A 6ZL 4.0 19.1 + - - -
275C ALA 3.1 9.4 + - - -
276C MET 3.1 6.1 + - - -
277C ILE 3.1 0.6 - - - -
278C ASN* 1.3 75.0 - - - +
280C ILE* 1.3 64.2 + - - +
282C GLY* 3.8 2.6 + - - -
283C GLY* 3.7 11.1 + - - -
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Residues in contact with ILE 280 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
69A TYR* 6.0 1.3 - - + -
501A 6ZL 5.9 3.6 - - + -
504A 6ZL 5.1 11.3 + - - +
276C MET* 3.2 32.5 - - + +
277C ILE* 3.0 17.6 + - + +
279C GLY* 1.3 76.2 - - - +
281C ILE* 1.3 68.6 + - + +
283C GLY* 3.2 13.2 + - - -
----------------------------------------------------------
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Residues in contact with ILE 281 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
277C ILE* 2.9 33.5 + - + +
278C ASN* 4.2 2.0 - - - +
280C ILE* 1.3 78.8 - - + +
282C GLY* 1.3 58.9 + - - +
283C GLY 3.0 10.8 + - - +
293C LEU* 3.4 41.8 - - + +
294C THR 4.4 0.2 - - - -
295C LEU* 4.2 19.3 - - + +
298C ILE* 4.0 22.2 - - + -
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Residues in contact with GLY 282 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
504A 6ZL 5.1 1.8 + - - -
278C ASN 3.2 16.4 + - - -
279C GLY* 3.8 4.9 + - - -
280C ILE 3.3 0.6 - - - -
281C ILE* 1.3 76.1 - - - +
283C GLY* 1.3 63.2 + - - +
284C VAL* 3.8 0.9 + - - -
292C ASP 5.1 11.5 + - - -
293C LEU 4.4 6.3 + - - -
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il