Contacts of the helix formed by residues 244 - 285 (chain A) in PDB entry 5L26
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ASN 244 (chain A).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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117A TYR* 3.3 16.2 - - - +
242A PRO* 4.2 1.2 - - - +
243A THR* 1.3 86.8 - - + +
245A VAL* 1.3 63.8 + - + +
246A ILE* 4.0 9.7 - - - +
247A ASP* 3.2 19.8 + - - +
248A ALA* 3.0 26.5 + - - +
369C LEU* 2.9 52.8 + - - +
372C ILE* 5.0 3.2 - - - +
373C ALA* 5.3 0.5 - - - +
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Residues in contact with VAL 245 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
114A VAL* 4.0 16.8 - - + +
117A TYR* 3.6 32.9 + - + -
118A ILE* 5.3 1.6 - - + -
244A ASN* 1.3 78.3 - - + +
246A ILE* 1.3 79.4 + - + +
248A ALA* 3.5 2.2 + - - +
249A ALA* 3.1 26.5 + - - +
503A 6ZL 4.0 46.2 - - + +
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Residues in contact with ILE 246 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
244A ASN* 3.2 11.3 - - - +
245A VAL* 1.3 92.0 - - + +
247A ASP* 1.3 59.1 + - - +
249A ALA* 3.5 2.6 + - - -
250A ALA* 3.0 28.6 + - + +
503A 6ZL 4.6 12.1 - - + -
270C PHE* 3.6 25.4 - - + -
329C VAL* 3.2 30.1 - - + +
330C ILE* 4.2 19.7 - - + +
369C LEU* 4.1 16.6 - - + -
370C GLY* 3.7 21.5 - - - +
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Residues in contact with ASP 247 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
242A PRO* 3.2 10.9 - - - +
243A THR* 2.9 22.7 + - - -
244A ASN* 3.2 25.4 + - - +
246A ILE* 1.3 77.3 - - - +
248A ALA* 1.3 56.7 + - - +
250A ALA* 4.5 4.2 - - - +
251A SER* 2.8 52.6 + - - -
370C GLY* 4.7 7.0 - - - +
373C ALA* 3.4 30.9 - - + +
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Residues in contact with ALA 248 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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113A ALA* 3.3 32.6 - - + +
114A VAL* 4.9 1.6 - - - -
117A TYR* 4.1 16.8 - - + -
242A PRO* 4.0 21.8 - - + -
244A ASN 3.0 16.5 + - - +
245A VAL* 3.7 5.4 - - - +
247A ASP* 1.3 77.1 - - - +
249A ALA* 1.3 57.8 + - - +
251A SER* 4.0 2.5 - - - -
252A GLY 3.1 22.9 + - - -
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Residues in contact with ALA 249 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
110A SER* 3.3 14.8 - - - -
114A VAL* 3.8 14.1 - - + +
245A VAL 3.1 17.5 + - - +
246A ILE* 4.6 0.4 - - - -
248A ALA* 1.3 75.3 - - - +
250A ALA* 1.3 64.8 + - - +
253A ALA* 3.0 21.7 + - - +
503A 6ZL 4.9 3.6 - - + -
269C ALA* 4.6 0.8 - - - +
270C PHE* 3.7 22.0 - - + -
273C LEU* 3.7 24.9 - - + -
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Residues in contact with ALA 250 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
246A ILE* 3.0 19.5 + - + +
247A ASP* 3.8 6.1 - - - +
249A ALA* 1.3 78.9 - - - +
251A SER* 1.3 62.6 + - - +
253A ALA* 3.4 5.8 + - - +
254A VAL* 3.2 29.8 + - - +
266C SER* 4.2 14.9 + - - +
270C PHE* 3.7 19.2 - - + -
370C GLY* 6.0 2.9 - - - +
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Residues in contact with SER 251 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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242A PRO* 5.6 3.9 - - - +
247A ASP* 2.8 42.6 + - - -
248A ALA* 4.0 5.2 - - - -
250A ALA* 1.3 74.8 - - - +
252A GLY* 1.3 61.2 + - - +
254A VAL* 3.3 8.1 + - - +
255A THR* 3.1 27.2 + - - -
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Residues in contact with GLY 252 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
109A SER* 3.3 26.6 - - - -
110A SER* 3.8 7.4 - - - -
113A ALA* 3.9 7.4 - - - -
248A ALA 3.1 17.0 + - - -
249A ALA 3.9 1.1 - - - -
251A SER* 1.3 77.5 - - - +
253A ALA* 1.3 56.5 + - - +
255A THR* 3.6 6.0 + - - -
256A GLY 3.0 21.8 + - - -
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Residues in contact with ALA 253 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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106A VAL* 3.4 15.1 - - + +
110A SER* 3.6 5.6 - - - -
249A ALA 3.0 17.8 + - - +
250A ALA 3.6 6.1 - - - +
252A GLY* 1.3 75.8 - - - +
254A VAL* 1.3 58.9 + - - +
256A GLY 3.3 1.0 + - - -
257A ALA* 2.9 28.2 + - - +
265C ALA* 3.6 30.1 - - - +
266C SER* 4.3 2.9 - - - -
269C ALA* 3.7 16.2 - - + -
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Residues in contact with VAL 254 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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250A ALA* 3.2 16.0 + - + +
251A SER* 3.3 8.7 + - - +
253A ALA* 1.3 73.6 - - - +
255A THR* 1.3 67.2 + - - +
257A ALA* 3.1 17.0 + - + +
258A GLN* 3.1 23.8 + - + +
261C ILE* 6.3 1.3 - - + -
262C ALA* 3.9 42.6 - - + +
265C ALA* 4.5 1.3 - - + -
266C SER* 4.2 4.3 - - - +
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Residues in contact with THR 255 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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109A SER* 5.6 1.3 - - - -
156A GLU* 5.0 6.1 - - - +
251A SER* 3.1 18.4 + - - -
252A GLY* 3.8 7.4 - - - -
254A VAL* 1.3 78.5 - - - +
256A GLY* 1.3 57.4 + - - +
258A GLN* 3.2 21.6 + - - +
259A ILE* 3.0 50.6 + - + +
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Residues in contact with GLY 256 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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105A ILE* 3.6 10.1 - - - +
106A VAL* 3.6 8.1 - - - +
109A SER* 3.5 28.9 - - - -
252A GLY 3.0 10.7 + - - -
253A ALA 3.3 4.0 + - - -
254A VAL 3.3 0.2 - - - -
255A THR* 1.3 76.0 - - - +
257A ALA* 1.3 56.4 + - - +
259A ILE* 3.9 8.3 - - - -
260A ALA* 3.0 27.7 + - - +
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Residues in contact with ALA 257 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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106A VAL* 3.6 12.6 - - + -
253A ALA 2.9 13.6 + - - +
254A VAL* 3.3 11.4 - - + +
256A GLY* 1.3 76.9 - - - +
258A GLN* 1.3 59.6 + - - +
260A ALA* 3.2 5.0 + - - +
261A ILE* 3.0 32.7 + - - +
261C ILE* 4.5 17.0 - - + -
265C ALA* 3.7 22.0 - - + -
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Residues in contact with GLN 258 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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254A VAL* 3.1 17.3 + - + +
255A THR* 3.2 31.6 + - - +
257A ALA* 1.3 76.6 - - - +
259A ILE* 1.3 61.5 + - + +
261A ILE* 3.6 15.3 - - + +
262A ALA* 3.0 27.5 + - - +
261C ILE* 5.7 1.0 - - + +
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Residues in contact with ILE 259 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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105A ILE* 3.9 17.0 - - + -
109A SER* 5.0 5.2 - - - +
156A GLU* 4.3 15.0 - - - +
255A THR* 3.0 40.6 + - + +
256A GLY* 3.8 8.1 - - - +
258A GLN* 1.3 79.4 - - + +
260A ALA* 1.3 58.9 + - - +
262A ALA* 3.2 7.2 + - - +
263A VAL* 2.9 39.0 + - + +
505A URI 4.9 21.3 - - + +
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Residues in contact with ALA 260 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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102A LEU* 3.5 49.5 - - + +
105A ILE* 4.1 14.6 - - + -
106A VAL* 4.3 4.7 - - + -
256A GLY 3.0 20.1 + - - +
257A ALA 3.4 6.5 - - - +
259A ILE* 1.3 77.0 - - - +
261A ILE* 1.3 57.5 + - + +
263A VAL* 3.6 0.4 + - - -
264A GLY 3.0 22.7 + - - -
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Residues in contact with ILE 261 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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102A LEU* 5.5 1.1 - - - -
257A ALA* 3.0 19.0 + - + +
258A GLN* 3.6 17.0 - - + +
259A ILE 3.2 0.2 - - - -
260A ALA* 1.3 75.8 - - + +
262A ALA* 1.3 59.7 + - - +
264A GLY* 3.3 1.1 + - - -
265A ALA* 3.0 29.8 + - - +
254B VAL* 6.4 0.9 - - + -
257B ALA* 4.4 19.7 - - + -
258B GLN* 5.8 0.4 - - - +
261B ILE* 4.2 19.1 - - + -
261C ILE* 4.1 34.3 - - + -
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Residues in contact with ALA 262 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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258A GLN 3.0 17.0 + - - +
259A ILE* 3.2 7.6 + - - +
261A ILE* 1.3 77.5 - - - +
263A VAL* 1.3 59.0 + - + +
265A ALA* 4.0 1.7 - - - +
266A SER* 2.7 35.0 + - - -
254B VAL* 3.9 32.1 - - + +
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Residues in contact with VAL 263 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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102A LEU* 4.5 8.3 - - + -
105A ILE* 4.6 9.9 - - + -
259A ILE* 2.9 33.5 + - + +
260A ALA* 4.0 5.2 - - - +
262A ALA* 1.3 73.4 - - + +
264A GLY* 1.3 60.9 + - - +
266A SER* 3.3 6.8 + - - -
267A LEU* 2.9 49.1 + - + +
333A PHE* 4.2 22.4 - - + -
505A URI 4.7 27.8 - - + +
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Residues in contact with GLY 264 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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102A LEU* 3.9 20.4 - - - +
260A ALA 3.0 17.7 + - - -
261A ILE* 3.7 1.3 - - - -
263A VAL* 1.3 78.4 - - - +
265A ALA* 1.3 58.7 + - - +
267A LEU* 3.5 3.1 + - - +
268A LEU* 3.1 17.2 + - - +
77B LEU* 3.6 28.4 - - - +
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Residues in contact with ALA 265 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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261A ILE* 3.0 17.2 + - + +
262A ALA 4.1 3.1 - - - +
264A GLY* 1.3 74.6 - - - +
266A SER* 1.3 65.8 + - - +
268A LEU* 3.4 3.6 + - - +
269A ALA* 3.1 19.1 + - - +
77B LEU* 5.3 0.9 - - - -
106B VAL* 3.6 15.2 - - + +
253B ALA* 3.5 23.4 - - - +
254B VAL* 4.5 1.6 - - - +
257B ALA* 3.7 27.6 - - + -
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Residues in contact with SER 266 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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262A ALA 2.7 23.4 + - - -
263A VAL* 3.6 7.4 - - - -
265A ALA* 1.3 76.2 - - - +
267A LEU* 1.3 58.7 + - - +
269A ALA* 3.4 0.9 + - - +
270A PHE* 2.9 55.3 + - - -
331A ASN* 5.8 0.2 - - - -
250B ALA* 4.1 21.5 + - - +
253B ALA* 3.9 9.2 - - - +
254B VAL* 4.2 4.9 - - - +
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Residues in contact with LEU 267 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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97A PHE* 3.6 36.6 - - + -
263A VAL* 2.9 30.7 + - + +
264A GLY* 3.8 4.9 - - - +
266A SER* 1.3 75.8 - - - +
268A LEU* 1.3 64.5 + - - +
270A PHE* 4.4 1.6 - - + -
271A VAL* 3.0 32.1 + - - +
331A ASN* 3.7 22.4 - - - +
333A PHE* 3.6 35.0 - - + -
334A VAL* 4.2 11.7 - - + -
505A URI 6.1 0.4 - - - -
76B PHE* 3.9 20.0 - - + -
77B LEU* 5.0 1.8 - - + -
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Residues in contact with LEU 268 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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264A GLY 3.1 14.3 + - - +
265A ALA* 3.6 8.7 - - - +
267A LEU* 1.3 76.4 - - - +
269A ALA* 1.3 62.5 + - - +
272A ALA* 3.2 24.3 + - - +
70B GLY 4.6 1.8 - - - +
73B GLY* 3.5 24.0 - - - +
74B VAL* 3.9 20.4 - - + +
76B PHE* 5.2 0.2 - - - -
77B LEU* 3.7 24.0 - - + +
78B PHE* 4.4 2.5 - - + -
103B PRO* 3.7 44.2 - - + +
106B VAL* 4.2 8.3 - - + -
107B PHE* 4.0 20.6 - - + +
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Residues in contact with ALA 269 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
265A ALA 3.1 16.6 + - - +
266A SER* 3.8 4.3 - - - +
268A LEU* 1.3 78.9 - - - +
270A PHE* 1.3 59.1 + - + +
272A ALA* 3.3 4.8 + - - +
273A LEU* 2.8 41.8 + - + +
106B VAL* 4.9 0.4 - - + +
107B PHE* 4.6 6.3 - - - -
110B SER* 3.3 33.9 - - - +
249B ALA 4.5 2.5 - - - +
253B ALA* 3.8 9.2 - - + -
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Residues in contact with PHE 270 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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266A SER* 2.9 34.6 + - - +
267A LEU* 4.0 5.2 - - - +
269A ALA* 1.3 79.3 - - + +
271A VAL* 1.3 58.3 + - - +
273A LEU* 3.2 7.3 + - + +
274A ILE* 2.8 36.8 + - - +
330A ILE* 3.7 27.4 - - + -
331A ASN* 3.3 30.1 - - - -
334A VAL* 4.6 4.9 - - + -
246B ILE* 3.7 35.7 - - + -
249B ALA* 3.8 29.8 - - + -
250B ALA* 4.0 16.8 - - + -
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Residues in contact with VAL 271 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
267A LEU 3.0 18.8 + - - +
270A PHE* 1.3 75.3 - - - +
272A ALA* 1.3 60.6 - - - +
274A ILE* 3.5 10.3 + - - +
275A ALA* 3.2 21.9 + - + +
334A VAL* 4.5 20.6 - - + -
337A SER* 5.8 0.9 - - - +
72B ASN* 3.8 26.9 - - + +
73B GLY* 3.9 6.5 - - - -
76B PHE* 3.7 35.0 - - + -
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Residues in contact with ALA 272 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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268A LEU 3.2 19.3 + - - +
269A ALA 3.3 0.8 + - - +
270A PHE 3.1 0.4 - - - -
271A VAL* 1.3 78.0 - - - +
273A LEU* 1.3 59.5 + - - +
275A ALA* 3.2 4.9 + - - +
276A MET* 2.9 27.2 + - - +
69B TYR* 3.2 28.8 - - - +
70B GLY* 3.6 8.1 - - - +
73B GLY* 4.1 2.6 - - - +
107B PHE* 3.5 28.9 - - + -
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Residues in contact with LEU 273 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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269A ALA 2.8 27.5 + - - +
270A PHE* 3.8 6.1 - - + +
272A ALA* 1.3 73.3 - - - +
274A ILE* 1.3 56.4 + - + +
276A MET* 3.3 10.0 + - + +
277A ILE* 3.0 39.5 + - + +
107B PHE* 3.6 22.7 - - + -
110B SER* 4.2 11.0 - - - +
111B LEU* 3.7 28.7 - - + -
114B VAL* 4.1 13.2 - - + -
249B ALA* 3.8 28.7 - - + -
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Residues in contact with ILE 274 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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270A PHE* 2.8 25.3 + - - +
271A VAL* 3.6 9.4 - - - +
272A ALA 3.2 0.2 - - - -
273A LEU* 1.3 75.7 - - + +
275A ALA* 1.3 58.8 + - - +
277A ILE* 3.2 12.1 + - + +
278A ASN* 3.0 30.2 + - - +
295A LEU* 4.8 15.7 - - + +
296A GLN* 3.4 31.4 - - - +
326A GLN* 5.2 6.1 - - + +
330A ILE* 4.0 28.9 - - + -
334A VAL* 3.9 28.3 - - + -
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Residues in contact with ALA 275 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
271A VAL 3.2 9.9 + - - +
272A ALA 3.2 8.6 + - - +
274A ILE* 1.3 79.9 - - - +
276A MET* 1.3 57.3 + - - +
278A ASN* 3.5 14.4 + - - +
279A GLY 3.1 19.4 + - - -
69B TYR* 3.6 15.4 - - + +
72B ASN* 3.4 33.2 - - + +
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Residues in contact with MET 276 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
272A ALA 2.9 13.5 + - - +
273A LEU* 3.5 15.5 - - - +
274A ILE 3.1 0.4 - - - -
275A ALA* 1.3 75.4 - - - +
277A ILE* 1.3 60.6 + - + +
279A GLY* 3.2 2.8 + - - -
280A ILE* 3.0 33.1 + - + +
66B VAL* 4.1 17.7 - - + -
69B TYR* 3.5 27.3 - - + -
107B PHE* 4.3 6.7 - - + -
111B LEU* 3.7 38.1 - - + -
115B LEU* 6.1 0.9 - - + -
503B 6ZL 3.2 46.2 - - + -
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Residues in contact with ILE 277 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
273A LEU* 3.0 25.9 + - + +
274A ILE* 3.2 9.6 + - + +
276A MET* 1.3 75.0 - - + +
278A ASN* 1.3 60.1 + - - +
280A ILE* 3.1 13.7 + - + +
281A ILE* 2.8 48.8 + - + +
295A LEU* 4.4 26.9 - - + -
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Residues in contact with ASN 278 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
274A ILE* 3.0 18.1 + - - +
275A ALA* 3.6 14.5 - - - +
276A MET 3.3 0.2 - - - -
277A ILE* 1.3 75.8 - - - +
279A GLY* 1.3 57.5 + - - +
281A ILE* 4.2 4.7 - - - +
282A GLY* 2.8 27.3 + - - -
293A LEU 4.3 2.6 - - - +
294A THR* 3.9 16.8 - - + +
295A LEU* 2.7 37.3 + - - +
296A GLN* 2.9 33.7 + - - +
503B 6ZL 5.4 0.9 + - - -
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Residues in contact with GLY 279 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
275A ALA 3.1 11.4 + - - -
276A MET 3.2 3.7 + - - -
277A ILE 3.1 0.4 - - - -
278A ASN* 1.3 77.0 - - - +
280A ILE* 1.3 58.2 + - - +
283A GLY* 3.0 23.6 + - - -
69B TYR* 3.4 26.2 - - - -
503B 6ZL 3.5 25.5 - - - +
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Residues in contact with ILE 280 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
276A MET* 3.0 20.4 + - + +
277A ILE* 3.1 15.5 + - + +
279A GLY* 1.3 73.6 - - - +
281A ILE* 1.3 64.4 + - + +
283A GLY* 3.3 1.9 + - - -
284A VAL* 3.0 43.8 + - + +
503B 6ZL 3.6 42.2 + - + +
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Residues in contact with ILE 281 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
277A ILE* 2.8 38.8 + - + +
278A ASN* 4.2 2.7 - - - +
280A ILE* 1.3 75.5 - - + +
282A GLY* 1.3 55.1 + - - +
284A VAL* 3.2 3.7 + - - +
285A GLY* 2.6 35.5 + - - +
293A LEU* 3.6 44.1 - - + +
295A LEU* 4.5 16.6 - - + +
298A ILE* 3.8 22.0 - - + -
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Residues in contact with GLY 282 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
278A ASN 2.8 20.1 + - - -
279A GLY 3.9 0.7 - - - -
281A ILE* 1.3 77.4 - - - +
283A GLY* 1.3 60.2 + - - +
285A GLY 3.9 4.3 - - - -
291A GLY* 3.8 37.1 - - - +
293A LEU* 3.9 8.0 + - - -
503B 6ZL 4.5 13.0 - - - -
----------------------------------------------------------
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Residues in contact with GLY 283 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
279A GLY 3.0 18.6 + - - -
280A ILE 3.7 1.1 - - - -
282A GLY* 1.3 77.9 - - - +
284A VAL* 1.3 63.1 + - - +
285A GLY 4.9 0.7 - - - -
501B 6ZL 5.6 2.5 + - - -
503B 6ZL 3.6 30.2 - - - -
----------------------------------------------------------
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Residues in contact with VAL 284 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
280A ILE* 3.0 30.1 + - + +
281A ILE* 3.9 3.8 - - - +
283A GLY* 1.3 78.8 - - - +
285A GLY* 1.3 62.1 + - - +
503B 6ZL 4.8 8.7 - - - +
----------------------------------------------------------
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Residues in contact with GLY 285 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
281A ILE* 2.6 20.8 + - - -
282A GLY 3.9 6.7 - - - -
283A GLY 4.8 0.9 - - - -
284A VAL* 1.3 78.3 - - - +
291A GLY* 2.4 39.7 + - - -
293A LEU* 5.1 13.1 - - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il