Contacts of the helix formed by residues 43 - 83 (chain K) in PDB entry 5LN3
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ARG 43 (chain K).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
28J ILE* 3.2 45.0 + - + +
29J GLU* 3.0 28.3 + - - -
32J GLN* 3.3 36.1 + - - +
40K LEU* 4.1 31.3 - - + +
42K SER* 1.3 78.6 - - - +
44K TYR* 1.4 53.1 - - - +
45K LYS 3.4 0.2 - - - -
46K LYS* 3.0 46.6 + - + +
47K LEU* 3.5 23.4 + - + +
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Residues in contact with TYR 44 (chain K).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
27J LYS* 3.3 53.8 + - + +
28J ILE* 3.6 21.5 - - + +
31J LEU* 3.5 29.4 - - + +
41K TYR 3.4 17.0 + - - +
42K SER 3.1 1.4 - - - -
43K ARG* 1.4 74.0 - - - +
45K LYS* 1.3 70.6 + - + +
46K LYS 3.3 0.5 + - - -
47K LEU* 3.3 11.4 + - - -
48K GLN* 3.3 29.9 + - + +
106N ASP* 4.5 13.3 + - - -
156N GLU* 3.8 25.1 - - + +
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Residues in contact with LYS 45 (chain K).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
41K TYR 4.5 3.8 + - - -
42K SER* 3.4 27.8 + - - +
43K ARG 3.4 1.2 - - - -
44K TYR* 1.3 78.0 - - + +
46K LYS* 1.3 65.6 + - + +
48K GLN* 3.1 34.9 + - - +
49K GLN* 3.6 10.3 + - - +
148N LYS* 5.8 3.8 - - - +
152N GLY* 3.6 34.4 + - - +
155N LEU* 4.0 11.9 - - + -
156N GLU* 4.6 15.7 + - + +
183N LEU* 4.0 34.8 - - + -
187N LEU* 3.5 34.2 - - + +
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Residues in contact with LYS 46 (chain K).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
42K SER* 3.6 20.1 + - - +
43K ARG* 3.0 26.4 + - + +
45K LYS* 1.3 75.3 - - + +
47K LEU* 1.4 63.1 + - + +
48K GLN 3.4 0.3 + - - -
49K GLN* 3.4 23.6 - - - +
50K GLU* 4.0 3.5 + - - +
148N LYS* 4.0 21.6 - - - +
183N LEU* 5.3 12.3 - - + +
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Residues in contact with LEU 47 (chain K).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
28J ILE* 3.0 42.4 - - + +
31J LEU* 3.7 29.5 - - + +
32J GLN* 4.1 18.4 - - + +
35J VAL* 4.6 9.2 - - + +
43K ARG* 3.8 35.4 - - + +
44K TYR* 3.3 2.0 + - - +
45K LYS 3.3 0.6 - - - -
46K LYS* 1.4 78.7 - - + +
48K GLN* 1.3 60.5 + - - +
50K GLU* 3.2 31.9 + - - +
51K LEU* 3.5 5.0 + - - +
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Residues in contact with GLN 48 (chain K).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
31J LEU* 3.9 17.7 - - + -
44K TYR* 3.3 29.6 - - + +
45K LYS* 3.1 21.0 + - - +
47K LEU* 1.3 77.3 - - - +
49K GLN* 1.4 55.4 + - + +
51K LEU* 3.2 27.9 + - - +
52K GLU* 3.3 20.2 + - - +
187N LEU* 3.2 31.0 - - + +
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Residues in contact with GLN 49 (chain K).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
45K LYS 3.6 15.3 - - - +
46K LYS* 3.4 16.2 - - - +
48K GLN* 1.4 71.3 - - - +
50K GLU* 1.4 64.4 - - - +
51K LEU 3.5 0.3 + - - -
52K GLU* 3.6 19.5 + - - +
53K PHE* 3.6 19.1 + - - +
186N SER* 4.0 29.5 + - - +
187N LEU* 4.5 18.1 + - + +
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Residues in contact with GLU 50 (chain K).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
35J VAL* 3.3 34.4 - - + +
36J ASN* 5.2 0.3 - - - +
46K LYS 4.0 2.8 + - - +
47K LEU* 3.2 23.0 + - - +
49K GLN* 1.4 77.6 - - - +
51K LEU* 1.4 62.8 + - - +
53K PHE* 3.4 16.5 + - - +
54K LEU* 3.5 24.5 + - + +
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Residues in contact with LEU 51 (chain K).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
31J LEU* 4.5 19.3 - - + -
34J ILE* 4.7 21.8 - - + +
35J VAL* 3.7 25.5 - - + +
38J LYS* 4.5 16.6 - - + -
47K LEU 3.5 2.6 + - - +
48K GLN* 3.2 15.7 + - - +
50K GLU* 1.4 75.9 - - - +
52K GLU* 1.3 67.7 + - + +
53K PHE 3.3 0.7 + - - -
54K LEU* 3.4 13.9 + - + +
55K GLU* 3.4 34.9 + - + +
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Residues in contact with GLU 52 (chain K).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
48K GLN* 3.3 21.3 + - + +
49K GLN* 3.6 29.4 + - - +
51K LEU* 1.3 83.6 - - + +
53K PHE* 1.4 62.2 + - - +
55K GLU* 3.5 21.0 + - - +
56K VAL* 3.4 19.9 + - - +
187N LEU* 5.8 1.5 - - - +
189N GLN* 6.1 0.5 - - - -
596N ASN* 3.8 29.2 + - - +
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Residues in contact with PHE 53 (chain K).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
49K GLN 3.6 10.0 + - - +
50K GLU* 3.4 12.5 + - - +
51K LEU 3.2 0.6 - - - -
52K GLU* 1.4 76.3 - - - +
54K LEU* 1.4 64.1 + - + +
56K VAL* 3.4 13.1 - - + +
57K GLN* 3.3 41.2 + - + +
632N GLN* 3.4 56.3 - - + +
635N SER* 3.4 24.0 - - - -
636N VAL* 3.9 17.0 - - + -
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Residues in contact with LEU 54 (chain K).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
35J VAL* 4.4 30.7 - - + +
38J LYS* 4.3 23.3 - - + -
39J SER* 4.9 13.0 - - - +
42J LEU* 3.7 21.3 - - + +
50K GLU* 3.5 23.8 - - + +
51K LEU* 3.5 7.6 - - + +
53K PHE* 1.4 75.1 - - + +
55K GLU* 1.3 54.8 + - - +
57K GLN* 3.1 23.3 + - - +
58K GLU* 2.8 37.2 + - - +
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Residues in contact with GLU 55 (chain K).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
38J LYS* 4.2 21.4 + - - +
51K LEU* 3.4 36.2 - - + +
52K GLU* 3.5 19.4 + - - +
54K LEU* 1.3 76.5 - - - +
56K VAL* 1.4 60.6 + - + +
58K GLU* 3.4 15.6 + - - +
59K GLU* 2.8 30.3 + - - +
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Residues in contact with VAL 56 (chain K).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
52K GLU* 3.4 17.7 - - + +
53K PHE* 3.4 14.6 - - + +
54K LEU 3.3 0.2 - - - -
55K GLU* 1.4 73.1 - - - +
57K GLN* 1.4 65.7 + - + +
59K GLU* 3.3 18.0 + - - +
60K TYR* 4.0 8.3 + - - +
596N ASN* 5.1 22.0 - - + +
599N ILE* 4.8 10.8 - - + -
600N ARG* 4.0 21.6 + - + +
603N LEU* 4.1 23.1 - - + +
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Residues in contact with GLN 57 (chain K).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
42J LEU* 4.5 11.0 - - + +
46J GLN* 4.1 16.4 + - - +
53K PHE* 3.3 51.5 + - + +
54K LEU* 3.1 27.6 + - - +
56K VAL* 1.4 80.3 - - + +
58K GLU* 1.4 64.1 + - - +
60K TYR* 3.3 21.2 + - - +
61K ILE* 3.6 14.8 - - + +
603N LEU* 6.1 1.8 - - - -
635N SER* 4.1 15.5 + - - -
636N VAL* 4.6 11.2 - - + -
639N LEU* 5.4 7.7 - - + +
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Residues in contact with GLU 58 (chain K).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
38J LYS* 3.2 53.9 + - - +
41J ASN* 4.3 11.8 - - - +
42J LEU* 3.9 24.5 + - + +
45J LEU* 5.1 12.8 - - + +
54K LEU 2.8 16.4 + - - +
55K GLU* 3.6 8.9 - - - +
57K GLN* 1.4 76.0 - - - +
59K GLU* 1.3 63.1 + - + +
61K ILE* 3.3 18.5 + - - +
62K LYS* 3.9 9.8 + - + +
----------------------------------------------------------
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Residues in contact with GLU 59 (chain K).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
55K GLU* 2.8 24.1 - - - +
56K VAL* 3.3 16.5 - - - +
57K GLN 3.4 0.2 - - - -
58K GLU* 1.3 74.8 - - + +
60K TYR* 1.4 60.8 + - - +
62K LYS* 3.0 24.7 + - - +
63K ASP* 2.8 20.2 - - - +
600N ARG* 3.4 29.3 - - - +
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Residues in contact with TYR 60 (chain K).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
56K VAL 4.0 5.5 + - - +
57K GLN* 3.3 13.7 - - - +
59K GLU* 1.4 75.5 - - - +
61K ILE* 1.3 66.3 + - - +
63K ASP* 3.2 14.0 + - + +
64K GLU* 3.0 48.3 + - + +
600N ARG* 3.4 25.3 - - - +
603N LEU* 3.1 46.0 + - + +
604N HIS* 5.2 0.4 - - - -
606N ALA* 4.5 2.4 - - - +
607N VAL* 3.6 34.7 - - + +
636N VAL* 5.5 3.1 - - + -
639N LEU* 4.5 13.0 - - + -
640N LEU* 3.7 39.9 - - + +
----------------------------------------------------------
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Residues in contact with ILE 61 (chain K).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
42J LEU* 3.9 17.0 - - + -
45J LEU* 4.1 12.8 - - + +
46J GLN* 3.5 30.7 - - + +
49J ARG* 3.9 30.7 - - + -
57K GLN 3.6 13.2 - - - +
58K GLU 3.5 13.5 - - - +
59K GLU 3.2 0.6 - - - -
60K TYR* 1.3 78.3 - - - +
62K LYS* 1.4 67.6 + - - +
64K GLU* 3.2 22.6 + - - +
65K GLN* 3.3 20.8 + - - +
639N LEU* 3.7 22.2 - - + -
----------------------------------------------------------
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Residues in contact with LYS 62 (chain K).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
45J LEU* 3.8 29.2 - - + +
58K GLU* 4.2 9.2 + - + +
59K GLU* 3.0 17.5 + - - +
61K ILE* 1.4 84.9 - - - +
63K ASP* 1.3 63.9 + - - +
65K GLN* 3.1 46.0 + - - +
66K LYS* 3.4 24.3 + - - +
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Residues in contact with ASP 63 (chain K).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
59K GLU* 2.8 26.2 - - - +
60K TYR* 3.2 19.1 - - + +
62K LYS* 1.3 80.5 - - - +
64K GLU* 1.4 62.0 + - - +
66K LYS* 3.3 21.8 + - - +
67K ASN* 3.3 21.0 + - - +
600N ARG* 4.3 10.2 + - - -
604N HIS* 3.8 26.8 - - + +
607N VAL* 4.8 13.3 - - + +
----------------------------------------------------------
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Residues in contact with GLU 64 (chain K).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
49J ARG* 3.4 41.5 + - - -
60K TYR* 3.0 49.9 + - + +
61K ILE* 3.3 17.8 - - - +
63K ASP* 1.4 75.5 - - - +
65K GLN* 1.4 63.9 + - - +
67K ASN* 3.2 8.0 + - - +
68K LEU* 3.1 32.5 + - + +
607N VAL* 4.4 20.4 - - + -
639N LEU* 4.0 13.0 - - - +
640N LEU* 5.7 1.0 - - - +
643N SER* 4.7 4.5 + - - +
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Residues in contact with GLN 65 (chain K).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
45J LEU* 3.6 16.8 + - - +
48J GLN* 3.5 29.6 + - - +
49J ARG* 4.6 7.4 - - + +
52J LEU* 4.6 20.8 - - + +
61K ILE* 3.4 18.7 - - + +
62K LYS* 3.1 36.1 + - - +
64K GLU* 1.4 76.8 - - - +
66K LYS* 1.4 62.0 + - + +
68K LEU* 3.5 14.7 + - - +
69K LYS* 3.4 31.2 + - - +
----------------------------------------------------------
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Residues in contact with LYS 66 (chain K).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
62K LYS* 3.6 30.7 + - - +
63K ASP* 3.3 20.1 + - - +
65K GLN* 1.4 75.2 - - + +
67K ASN* 1.4 62.9 + - - +
69K LYS* 3.3 35.4 + - - +
70K LYS* 3.4 23.3 + - - +
----------------------------------------------------------
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Residues in contact with ASN 67 (chain K).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
63K ASP 3.3 9.3 + - - +
64K GLU* 3.2 12.7 + - - +
66K LYS* 1.4 76.4 - - - +
68K LEU* 1.3 69.5 + - + +
70K LYS* 3.3 22.0 + - - +
71K GLU* 3.0 44.8 + - - +
607N VAL* 3.5 29.3 - - + +
608N SER* 4.7 5.5 - - - +
615N ARG* 4.2 18.8 - - - +
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Residues in contact with LEU 68 (chain K).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
49J ARG* 4.3 20.2 - - + +
52J LEU* 4.4 10.5 - - + -
53J ASN* 3.8 47.8 - - + +
56J VAL* 4.1 18.7 - - + +
64K GLU* 3.1 19.2 + - + +
65K GLN* 3.7 8.1 - - - +
67K ASN* 1.3 87.8 - - - +
69K LYS* 1.3 63.0 + - - +
71K GLU* 3.3 11.5 + - + +
72K PHE* 3.2 21.3 + - - +
643N SER* 5.4 6.3 - - - +
644N TYR* 5.6 6.5 - - + +
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Residues in contact with LYS 69 (chain K).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
52J LEU* 6.6 0.4 - - + -
65K GLN* 3.4 37.6 + - - +
66K LYS* 3.4 20.8 - - - +
67K ASN 3.3 0.2 - - - -
68K LEU* 1.3 76.0 - - - +
70K LYS* 1.3 64.9 + - + +
72K PHE* 3.2 22.1 + - - +
73K LEU* 3.9 10.1 - - - +
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Residues in contact with LYS 70 (chain K).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
66K LYS* 3.4 35.4 + - - +
67K ASN* 3.3 14.6 + - - +
69K LYS* 1.3 78.0 - - + +
71K GLU* 1.4 69.4 + - - +
72K PHE 3.1 1.2 + - - -
73K LEU* 3.2 20.5 + - + +
74K HIS* 3.1 30.7 - - + +
----------------------------------------------------------
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Residues in contact with GLU 71 (chain K).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
56J VAL* 4.4 13.9 - - + +
60J ARG* 3.5 20.9 + - - +
67K ASN* 3.0 46.9 + - - +
68K LEU* 3.3 13.9 + - + +
70K LYS* 1.4 84.1 - - - +
72K PHE* 1.4 63.4 + - - +
74K HIS* 3.2 36.3 + - - +
75K ALA* 3.4 6.2 + - - +
610N VAL* 6.2 0.7 - - - +
615N ARG* 6.1 2.7 - - - -
644N TYR* 5.2 11.9 - - + -
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Residues in contact with PHE 72 (chain K).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
55J LYS* 4.2 34.5 - - + -
56J VAL* 4.0 23.8 - - + +
59J LEU* 3.5 41.2 - - + +
68K LEU 3.2 7.6 + - - +
69K LYS* 3.2 15.1 + - - +
70K LYS 3.1 0.8 + - - -
71K GLU* 1.4 78.8 - - - +
73K LEU* 1.4 63.4 + - + +
74K HIS 3.4 0.3 + - - -
75K ALA* 3.4 14.2 + - - +
76K GLN* 3.4 36.6 + - - +
----------------------------------------------------------
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Residues in contact with LEU 73 (chain K).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
69K LYS 3.9 9.2 - - - +
70K LYS* 3.4 22.9 - - + +
72K PHE* 1.4 78.9 - - + +
74K HIS* 1.3 71.9 + - + +
76K GLN* 3.1 31.8 + - - +
77K GLU* 3.2 17.7 + - + +
----------------------------------------------------------
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Residues in contact with HIS 74 (chain K).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
60J ARG* 4.0 11.1 + - - +
70K LYS* 3.1 36.4 + - + +
71K GLU* 3.2 30.4 + - - +
73K LEU* 1.3 87.0 - - + +
75K ALA* 1.4 62.9 + - - +
77K GLU* 3.3 38.8 + - - +
78K GLU* 3.7 11.2 + - - +
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Residues in contact with ALA 75 (chain K).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
56J VAL* 5.4 2.0 - - + +
59J LEU* 3.7 31.6 - - + -
60J ARG* 4.1 20.8 - - - +
71K GLU 3.4 5.9 + - - +
72K PHE* 3.5 11.2 - - - +
74K HIS* 1.4 77.0 - - - +
76K GLN* 1.3 62.3 + - - +
78K GLU* 3.0 31.8 + - - +
79K VAL* 3.8 9.3 + - - +
----------------------------------------------------------
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Residues in contact with GLN 76 (chain K).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
59J LEU* 3.9 9.2 - - + +
72K PHE* 3.4 44.3 + - + +
73K LEU* 3.1 24.2 + - - +
75K ALA* 1.3 76.6 - - - +
77K GLU* 1.3 63.6 + - - +
78K GLU 3.4 0.3 + - - -
79K VAL* 3.5 21.1 - - + +
80K LYS* 3.9 14.9 - - - +
----------------------------------------------------------
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Residues in contact with GLU 77 (chain K).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
73K LEU* 3.2 15.2 + - + +
74K HIS* 3.3 34.7 - - - +
75K ALA 3.2 0.4 - - - -
76K GLN* 1.3 75.7 - - - +
78K GLU* 1.3 62.4 + - + +
80K LYS* 3.2 28.4 - - - +
81K ARG* 3.6 39.7 + - - +
----------------------------------------------------------
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Residues in contact with GLU 78 (chain K).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
60J ARG* 3.7 27.8 + - - -
63J LEU* 3.6 33.6 - - + +
74K HIS 3.7 12.6 - - - +
75K ALA* 3.0 16.3 + - - +
77K GLU* 1.3 76.6 - - + +
79K VAL* 1.3 62.1 + - + +
81K ARG* 3.2 30.0 - - - +
82K ILE* 3.5 8.3 + - - +
154V LYS* 3.0 32.7 + - + +
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Residues in contact with VAL 79 (chain K).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
59J LEU 5.5 2.7 - - - +
62J GLU* 5.2 4.9 - - + -
63J LEU* 4.0 26.9 - - + +
66J LEU* 4.9 8.7 - - + -
75K ALA 4.2 6.5 - - - +
76K GLN* 3.5 25.4 - - - +
78K GLU* 1.3 75.5 - - - +
80K LYS* 1.4 62.5 + - + +
82K ILE* 3.2 23.9 - - - +
116K LEU* 3.9 37.0 - - + +
118K THR* 6.0 2.5 - - - +
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Residues in contact with LYS 80 (chain K).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
76K GLN* 3.9 16.7 + - - +
77K GLU* 3.2 24.3 - - - +
79K VAL* 1.4 79.2 - - + +
81K ARG* 1.4 60.9 + - + +
82K ILE 3.4 0.3 + - - -
83K GLN 3.1 20.3 + - - +
84K SER* 5.1 0.9 - - - -
116K LEU* 5.7 2.2 - - - -
118K THR* 5.9 3.1 - - - -
140K VAL* 5.6 2.6 - - - +
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Residues in contact with ARG 81 (chain K).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
77K GLU* 3.6 49.6 + - - +
78K GLU* 3.2 16.9 - - - +
80K LYS* 1.4 79.3 - - + +
82K ILE* 1.3 63.7 + - + +
83K GLN 3.1 9.2 + - - +
84K SER* 3.7 12.0 + - - -
173U GLU* 3.8 16.4 + - - -
152V LYS* 3.2 47.3 + - + +
153V GLY* 3.5 27.6 + - - -
154V LYS* 3.9 30.2 - - - +
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Residues in contact with ILE 82 (chain K).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
63J LEU* 3.6 35.4 - - + +
66J LEU* 4.4 20.0 - - + -
67J GLN* 5.2 14.1 - - - +
78K GLU 3.5 6.3 + - - +
79K VAL* 3.2 19.5 + - - +
81K ARG* 1.3 77.9 - - + +
83K GLN* 1.3 85.0 + - + +
84K SER 4.1 0.2 + - - -
152V LYS* 4.1 19.3 + - + +
154V LYS* 6.2 3.8 - - - +
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Residues in contact with GLN 83 (chain K).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
66J LEU* 4.8 9.9 + - - +
80K LYS 3.1 19.8 + - - +
81K ARG 3.4 0.6 - - - +
82K ILE* 1.3 102.4 - - + +
84K SER* 1.3 62.9 + - - +
87K LEU* 4.6 6.3 - - + -
133K HIS* 3.6 44.6 + - - +
136K SER* 4.0 13.5 + - - -
138K ALA* 5.0 7.5 - - + +
140K VAL* 3.8 39.7 - - + +
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il