Contacts of the helix formed by residues 11 - 62 (chain D) in PDB entry 5LS6
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with GLY 11 (chain D).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
10D LYS* 1.3 78.6 - - - +
12D PRO* 1.3 76.6 - - - +
13D VAL* 3.4 3.1 - - - -
14D CYS* 3.7 18.6 - - - +
15D TRP* 3.1 28.6 + - - -
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Residues in contact with PRO 12 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
10D LYS* 5.7 1.9 - - + -
11D GLY* 1.3 84.2 - - - +
13D VAL* 1.3 71.7 + - + +
15D TRP* 3.9 11.9 + - + +
16D ARG* 3.5 28.1 + - - +
222D LYS* 5.1 10.3 + - - -
226D ALA* 5.3 0.9 - - - +
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Residues in contact with VAL 13 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
11D GLY* 5.3 0.9 - - - -
12D PRO* 1.3 86.4 - - + +
14D CYS* 1.3 68.4 + - + +
16D ARG* 3.4 24.4 + - - +
17D LYS* 3.3 32.6 + - + +
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Residues in contact with CYS 14 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
10D LYS* 5.3 2.5 - - - -
11D GLY* 3.4 25.3 + - - +
12D PRO 3.4 0.4 - - - -
13D VAL* 1.3 85.1 - - + +
15D TRP* 1.3 62.1 + - - +
16D ARG 3.3 0.3 + - - -
17D LYS* 3.5 4.4 + - - +
18D ARG* 3.2 70.1 + - - +
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Residues in contact with TRP 15 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
10D LYS* 3.8 21.9 - - + +
11D GLY 3.1 29.5 + - - +
12D PRO* 4.0 5.2 - - + +
14D CYS* 1.3 75.4 - - - +
16D ARG* 1.3 57.0 + - - +
18D ARG* 3.6 15.8 + - - +
19D VAL* 2.9 32.6 + - - +
178D LEU* 3.6 25.1 - - + -
181D TYR* 4.7 15.3 - + - -
182D ASN* 4.4 23.3 - - - -
220D SER* 5.0 6.1 - - - -
222D LYS* 3.5 47.8 - - + +
223D ILE* 3.4 32.3 - - + -
226D ALA* 3.7 18.4 - - + -
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Residues in contact with ARG 16 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
12D PRO* 3.5 28.1 + - - +
13D VAL* 3.4 21.1 + - - +
14D CYS 3.2 0.6 - - - -
15D TRP* 1.3 74.8 - - - +
17D LYS* 1.3 55.3 + - + +
19D VAL* 3.1 8.8 + - - +
20D LYS* 2.6 37.1 + - - +
226D ALA* 4.2 21.8 - - + +
229D SER* 3.4 29.7 + - - -
230D MET* 4.1 22.3 - - - +
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Residues in contact with LYS 17 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
13D VAL* 3.3 20.2 + - + +
14D CYS* 4.0 5.4 - - - +
16D ARG* 1.3 79.6 - - + +
18D ARG* 1.3 53.7 + - + +
20D LYS* 3.6 14.9 - - + +
21D SER* 2.7 39.5 + - - +
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Residues in contact with ARG 18 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
10D LYS* 5.6 8.9 - - - +
14D CYS* 3.2 45.8 + - - +
15D TRP* 3.8 19.6 - - + +
17D LYS* 1.3 74.5 - - + +
19D VAL* 1.3 60.7 + - - +
21D SER* 3.8 6.2 - - - -
22D GLU* 3.0 36.5 + - - +
178D LEU* 5.7 2.4 - - + +
181D TYR* 2.8 51.4 + - + +
182D ASN 5.1 6.3 + - - -
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Residues in contact with VAL 19 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
15D TRP 2.9 20.8 + - - +
16D ARG* 3.1 7.2 + - - +
18D ARG* 1.3 74.4 - - - +
20D LYS* 1.3 56.6 + - - +
22D GLU* 3.4 5.0 + - - +
23D TYR* 2.8 37.2 + - + +
174D LEU* 4.0 13.8 - - + +
178D LEU* 3.3 44.2 - - + -
226D ALA* 4.9 5.6 - - + -
227D ILE* 3.6 24.0 - - + -
230D MET* 4.5 16.2 - - + -
231D PHE* 5.5 3.8 - - + -
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Residues in contact with LYS 20 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
16D ARG 2.6 19.1 + - - +
17D LYS* 3.8 16.5 - - + +
19D VAL* 1.3 75.2 - - - +
21D SER* 1.3 62.8 + - - +
23D TYR* 3.6 6.7 - - - +
24D MET* 3.1 62.6 + - + +
162D GLU* 6.3 1.1 - - + -
163D CYS* 3.8 23.8 - - - -
230D MET* 3.9 16.6 - - + -
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Residues in contact with SER 21 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
17D LYS* 2.7 26.1 + - - +
18D ARG* 3.8 7.4 - - - -
19D VAL 3.3 0.2 - - - -
20D LYS* 1.3 73.6 - - - +
22D GLU* 1.3 70.3 + - - +
24D MET* 3.2 10.4 + - - +
25D ARG* 3.2 21.3 + - - +
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Residues in contact with GLU 22 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
18D ARG* 3.0 23.9 + - - +
19D VAL* 3.8 5.4 - - - +
21D SER* 1.3 80.1 - - - +
23D TYR* 1.3 56.0 + - - +
25D ARG* 3.1 46.0 + - - +
26D LEU* 2.8 44.7 + - + +
174D LEU* 4.8 5.2 - - + -
177D ALA* 3.6 23.3 - - + +
178D LEU* 5.6 2.2 - - + +
181D TYR* 3.1 39.3 - - - -
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Residues in contact with TYR 23 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
19D VAL* 2.8 23.3 + - + +
20D LYS* 3.6 8.5 - - - +
22D GLU* 1.3 73.3 - - - +
24D MET* 1.3 74.8 + - - +
26D LEU* 4.3 4.7 - - - +
27D ARG* 3.4 52.6 + - + +
163D CYS* 3.5 35.4 - - + -
164D GLY 3.6 3.9 + - - -
165D PHE* 2.4 50.2 + - - -
166D ILE* 4.2 15.3 - - + -
170D ILE* 4.6 7.1 - - + +
174D LEU* 4.4 18.5 - - + +
231D PHE* 4.1 14.1 - + + -
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Residues in contact with MET 24 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
20D LYS* 3.1 52.9 + - + +
21D SER* 3.6 8.5 - - - +
22D GLU 3.2 0.4 - - - -
23D TYR* 1.3 90.0 - - - +
25D ARG* 1.3 64.6 + - - +
27D ARG* 3.5 5.7 + - - +
28D GLN* 3.2 25.6 + - - +
163D CYS* 5.7 1.3 - - - -
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Residues in contact with ARG 25 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
21D SER 3.2 12.4 + - - +
22D GLU* 3.1 47.6 + - - +
24D MET* 1.3 74.0 - - - +
26D LEU* 1.3 71.7 + - - +
28D GLN* 2.9 23.3 + - + +
29D LEU* 3.1 28.7 + - + +
177D ALA* 4.4 12.9 + - - +
181D TYR* 6.1 0.2 - - - -
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Residues in contact with LEU 26 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
22D GLU* 2.8 29.8 + - + +
23D TYR* 4.4 4.7 - - - +
25D ARG* 1.3 84.8 - - - +
27D ARG* 1.3 59.4 + - + +
29D LEU* 4.2 17.3 - - + +
30D LYS* 3.2 28.1 + - - +
170D ILE* 5.1 8.9 - - + +
173D GLU* 3.3 40.8 - - + +
174D LEU* 3.7 19.3 - - + +
177D ALA* 3.5 24.5 - - + -
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Residues in contact with ARG 27 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
23D TYR* 3.4 45.4 + - + +
24D MET* 3.8 5.6 - - - +
25D ARG 3.1 0.8 - - - -
26D LEU* 1.3 76.1 - - - +
28D GLN* 1.3 64.1 + - - +
30D LYS* 4.2 3.4 - - - +
31D ARG* 3.2 25.8 + - - +
164D GLY* 5.6 0.4 - - - -
165D PHE* 3.2 46.0 - - - +
170D ILE* 4.4 23.3 - - + +
352E ILE* 5.7 1.4 - - - +
355E ARG* 3.5 27.3 - - - +
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Residues in contact with GLN 28 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
24D MET 3.2 14.8 + - - +
25D ARG* 2.9 12.8 + - + +
27D ARG* 1.3 77.0 - - - +
29D LEU* 1.3 60.2 + - - +
31D ARG* 3.2 45.7 + - - +
32D PHE* 3.1 35.2 - - + -
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Residues in contact with LEU 29 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
25D ARG* 3.1 39.9 + - + +
26D LEU* 4.2 18.6 - - + +
28D GLN* 1.3 74.0 - - - +
30D LYS* 1.3 73.7 + - + +
32D PHE* 3.4 8.4 + - - +
33D ARG* 3.3 22.7 + - - +
173D GLU* 5.9 2.0 - - - +
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Residues in contact with LYS 30 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
26D LEU 3.2 19.4 + - - +
27D ARG* 4.2 4.5 - - - +
28D GLN 3.4 0.2 - - - -
29D LEU* 1.3 87.4 - - + +
31D ARG* 1.3 56.2 + - - +
33D ARG* 3.7 7.4 + - + +
34D ARG* 3.0 68.5 + - + +
169D GLU* 3.0 33.7 + - - +
170D ILE* 4.7 11.8 - - + +
173D GLU* 2.8 38.2 + - - +
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Residues in contact with ARG 31 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
27D ARG 3.2 12.9 + - - +
28D GLN* 3.2 47.6 + - - +
30D LYS* 1.3 78.3 - - - +
32D PHE* 1.3 69.2 + - + +
34D ARG* 3.6 4.5 - - - +
35D ALA* 2.7 40.3 + - + +
353E LEU 6.1 0.7 - - - +
396E PRO* 6.1 5.2 - - + -
398E LYS* 3.6 33.9 - - - +
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Residues in contact with PHE 32 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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28D GLN* 3.1 47.2 + - + -
29D LEU* 3.4 8.7 + - - +
31D ARG* 1.3 93.4 - - + +
33D ARG* 1.3 66.9 + - - +
35D ALA* 3.8 13.6 + - + +
36D ASP* 4.0 9.0 + - - +
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Residues in contact with ARG 33 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
29D LEU 3.3 14.7 + - - +
30D LYS* 3.9 9.4 - - + +
32D PHE* 1.3 81.1 - - - +
34D ARG* 1.3 85.1 + - + +
35D ALA 3.5 0.3 + - - -
36D ASP* 3.5 15.2 + - - +
37D GLU* 3.8 24.6 + - - +
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Residues in contact with ARG 34 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
30D LYS* 3.0 52.7 + - + +
31D ARG* 3.9 5.2 - - - +
33D ARG* 1.3 96.6 - - + +
35D ALA* 1.3 54.3 + - - +
37D GLU* 3.0 26.4 + - - +
38D VAL* 2.8 44.2 + - + +
169D GLU* 3.2 28.7 + - - -
335E LYS* 5.9 1.6 - - - +
336E MET* 4.1 38.2 - - - +
351E THR* 4.4 9.9 - - - +
352E ILE 6.0 0.2 - - - -
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Residues in contact with ALA 35 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
31D ARG* 2.7 27.2 + - + +
32D PHE* 4.1 14.1 - - + +
33D ARG 3.4 0.6 - - - -
34D ARG* 1.3 72.0 - - - +
36D ASP* 1.3 61.6 + - - +
38D VAL* 3.5 19.9 - - + +
39D LYS* 3.6 7.6 + - - +
395E ASP* 3.3 27.2 - - - +
396E PRO* 4.8 9.2 - - + -
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Residues in contact with ASP 36 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
32D PHE 4.0 6.0 + - - +
33D ARG 3.5 11.0 + - - +
34D ARG 3.1 0.2 - - - -
35D ALA* 1.3 75.7 - - - +
37D GLU* 1.3 69.5 + - + +
39D LYS* 3.2 22.1 + - - +
40D SER* 3.4 9.0 + - - -
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Residues in contact with GLU 37 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
33D ARG* 4.2 27.8 + - + +
34D ARG* 3.0 27.3 + - - +
36D ASP* 1.3 81.0 - - + +
38D VAL* 1.3 57.3 + - - +
40D SER* 3.0 13.7 + - - -
41D MET* 2.8 27.9 + - + +
336E MET* 3.4 29.4 - - + +
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Residues in contact with VAL 38 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
34D ARG* 2.8 31.7 + - + +
35D ALA* 3.5 20.6 - - + +
37D GLU* 1.3 69.6 - - - +
39D LYS* 1.3 60.1 + - + +
41D MET* 3.4 8.3 - - - +
42D PHE* 2.6 59.8 + - + -
336E MET* 3.9 20.4 - - - -
351E THR* 6.0 0.2 - - + -
352E ILE 5.4 0.7 - - - +
353E LEU* 4.0 32.1 - - + +
395E ASP* 5.4 0.9 - - - -
396E PRO* 5.0 10.5 - - + -
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Residues in contact with LYS 39 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
35D ALA 3.7 8.7 - - - +
36D ASP* 3.2 14.3 + - - +
38D VAL* 1.3 81.0 - - - +
40D SER* 1.3 57.2 + - - +
42D PHE* 3.7 10.5 - - - +
43D SER* 2.9 29.0 + - - -
394E GLU* 3.9 36.3 - - + +
395E ASP* 4.3 22.4 + - - +
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Residues in contact with SER 40 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
36D ASP* 3.4 7.7 + - - -
37D GLU* 3.0 16.5 + - - -
39D LYS* 1.3 78.9 - - - +
41D MET* 1.3 55.7 + - - +
43D SER* 3.3 7.1 + - - -
44D SER* 2.9 28.9 + - - -
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Residues in contact with MET 41 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
37D GLU* 2.8 18.3 + - + +
38D VAL* 3.1 11.0 + - - +
40D SER* 1.3 71.0 - - - +
42D PHE* 1.3 56.0 + - - +
44D SER* 3.4 11.5 + - - +
45D ASN* 2.7 40.3 + - + +
48D LYS* 5.9 5.4 - - - +
317E ASP* 6.4 1.6 - - + -
318E LEU* 4.1 22.9 - - + -
332E LYS* 4.1 19.7 - - - +
336E MET* 3.6 36.1 - - + +
337E GLU* 5.9 2.0 - - - +
353E LEU* 4.8 7.0 - - + -
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Residues in contact with PHE 42 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
38D VAL* 2.6 48.5 + - + +
39D LYS* 3.7 9.6 - - - +
41D MET* 1.3 71.3 - - - +
43D SER* 1.3 53.6 + - - +
45D ASN* 3.6 5.8 + - - +
46D ARG* 2.6 37.7 + - - +
315E LEU* 4.9 8.7 - - + -
318E LEU* 4.0 13.2 - - + -
330E CYS* 3.8 25.6 - - + -
353E LEU* 4.0 18.6 - - + -
354E GLY* 4.5 5.6 - - - -
356E PHE* 5.8 2.5 - + - -
393E VAL 4.7 13.9 - - - +
394E GLU* 5.6 3.1 - - - -
395E ASP 4.8 8.3 - - - -
396E PRO* 5.5 1.3 - - + -
397E HIS* 4.1 28.0 - + - -
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Residues in contact with SER 43 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
39D LYS* 2.9 19.3 + - - -
40D SER* 3.3 9.4 - - - -
42D PHE* 1.3 73.7 - - - +
44D SER* 1.3 59.8 + - - +
46D ARG* 3.2 7.2 + - - +
47D GLN* 2.9 31.5 + - - +
----------------------------------------------------------
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Residues in contact with SER 44 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
40D SER 2.9 16.8 + - - -
41D MET* 3.6 15.7 - - - +
43D SER* 1.3 75.2 - - - +
45D ASN* 1.3 56.6 + - - +
47D GLN* 3.1 12.2 + - - +
48D LYS* 2.9 42.9 + - - +
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Residues in contact with ASN 45 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
41D MET* 2.7 24.8 + - + +
42D PHE* 3.6 5.8 + - - +
44D SER* 1.3 72.1 + - - +
46D ARG* 1.3 57.1 + - - +
48D LYS* 3.2 11.1 + - - +
49D ILE* 2.9 49.8 + - - +
315E LEU* 2.8 28.0 + - - +
317E ASP* 3.0 32.3 + - - +
318E LEU* 3.3 32.6 + - + +
----------------------------------------------------------
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Residues in contact with ARG 46 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
42D PHE 2.6 23.0 + - - +
43D SER* 3.4 7.6 - - - +
45D ASN* 1.3 69.0 - - - +
47D GLN* 1.3 66.3 + - - +
49D ILE* 3.1 44.5 + - - +
50D LEU* 3.0 22.1 + - - +
315E LEU* 4.7 0.6 - - - +
373E TRP 2.9 21.2 + - - -
374E GLN 2.5 27.1 + - - -
375E LYS* 3.3 25.9 - - - +
391E LEU* 3.4 25.2 + - - +
392E GLU* 4.4 12.8 - - + +
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Residues in contact with GLN 47 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
43D SER* 2.9 14.2 + - - +
44D SER* 3.1 13.9 - - - +
46D ARG* 1.3 75.0 - - - +
48D LYS* 1.3 61.8 + - + +
50D LEU* 3.0 30.8 + - - +
51D GLU* 3.4 36.8 + - - +
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Residues in contact with LYS 48 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
41D MET* 5.9 5.1 - - - +
44D SER* 2.9 30.1 + - - +
45D ASN* 3.2 15.7 + - - +
47D GLN* 1.3 75.3 - - + +
49D ILE* 1.3 63.8 + - + +
51D GLU* 3.8 6.8 + - - +
52D ARG* 3.2 53.6 + - - +
316E GLY* 5.5 0.7 - - - -
317E ASP* 3.3 38.5 + - + +
339E ASP* 4.9 12.3 + - - -
340E ILE* 5.9 0.2 - - - +
----------------------------------------------------------
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Residues in contact with ILE 49 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
45D ASN* 2.9 40.7 + - - +
46D ARG* 3.1 40.8 + - - +
48D LYS* 1.3 76.2 - - - +
50D LEU* 1.3 51.5 + - - +
52D ARG* 3.2 2.1 + - - +
53D THR* 2.7 56.2 + - + +
246E LEU* 3.9 6.5 - - + -
315E LEU* 3.8 20.0 - - + -
316E GLY* 3.7 20.2 - - - +
373E TRP 4.1 5.4 - - - +
374E GLN* 3.3 19.3 - - - +
----------------------------------------------------------
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Residues in contact with LEU 50 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
46D ARG* 3.0 12.3 + - - +
47D GLN* 3.0 26.2 + - - +
49D ILE* 1.3 75.9 - - - +
51D GLU* 1.3 64.5 + - + +
53D THR* 2.5 20.6 + - - +
54D GLU* 2.8 35.0 + - + +
373E TRP* 4.5 8.2 - - + -
----------------------------------------------------------
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Residues in contact with GLU 51 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
322A PRO* 4.8 1.5 - - + +
323A GLN* 3.0 41.4 + - + +
47D GLN* 3.4 30.5 + - - +
48D LYS* 4.3 7.9 - - - +
49D ILE 3.3 0.4 - - - -
50D LEU* 1.3 80.3 - - + +
52D ARG* 1.3 55.9 + - + +
54D GLU* 3.1 9.6 + - - +
55D ILE* 2.7 47.7 + - + +
----------------------------------------------------------
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Residues in contact with ARG 52 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
48D LYS* 3.2 42.6 + - - +
49D ILE 3.2 2.3 + - - +
51D GLU* 1.3 76.0 - - + +
53D THR* 1.3 67.7 + - - +
55D ILE* 3.3 11.3 + - + +
56D LEU* 3.0 28.6 + - - +
245E ASP* 4.5 8.1 + - - +
246E LEU* 3.8 27.0 - - + +
247E LEU* 3.5 44.3 - - + +
250E LYS* 5.0 1.6 - - - +
316E GLY 4.1 13.1 + - - -
317E ASP* 3.3 38.8 + - - -
341E ASP* 5.6 3.2 + - - -
----------------------------------------------------------
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Residues in contact with THR 53 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
49D ILE* 2.7 41.9 + - + +
50D LEU* 2.5 28.4 + - - -
52D ARG* 1.3 71.6 - - - +
54D GLU* 1.3 60.9 + - - -
56D LEU* 3.0 9.0 + - - +
57D ASN* 2.8 24.6 + - - +
246E LEU* 4.1 13.4 - - + +
372E PHE* 3.7 33.8 - - + +
373E TRP* 3.6 27.1 - - - +
374E GLN* 4.8 0.2 - - - +
----------------------------------------------------------
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Residues in contact with GLU 54 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
322A PRO* 3.9 26.5 - - + -
50D LEU* 2.8 35.3 + - + +
51D GLU* 3.2 13.0 - - - +
53D THR* 1.3 71.8 + - - +
55D ILE* 1.3 56.4 + - - +
57D ASN* 2.9 11.4 + - - +
58D GLN* 2.9 53.5 + - + +
61D LYS* 5.1 0.7 + - - -
373E TRP* 4.1 17.8 - - + -
----------------------------------------------------------
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Residues in contact with ILE 55 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
322A PRO* 3.7 29.6 - - + -
323A GLN* 6.2 3.4 - - + +
51D GLU* 2.7 34.9 + - + +
52D ARG* 3.7 11.4 - - + +
53D THR 3.2 0.4 - - - -
54D GLU* 1.3 73.2 - - - +
56D LEU* 1.3 60.0 + - + +
58D GLN* 4.0 4.0 + - - +
59D GLU* 3.2 37.0 + - - +
201E ARG* 4.0 21.8 - - - +
247E LEU* 4.8 11.9 - - + -
----------------------------------------------------------
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Residues in contact with LEU 56 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
52D ARG 3.0 14.9 + - - +
53D THR* 3.0 7.4 + - - +
55D ILE* 1.3 76.0 - - + +
57D ASN* 1.3 60.0 + - - +
59D GLU* 3.2 10.0 + - - +
60D TRP* 2.9 26.7 + - - +
63D ARG* 4.6 5.4 + - - +
200E PRO* 3.8 27.8 - - + +
201E ARG* 3.3 33.9 - - - +
246E LEU* 3.5 37.9 - - + +
247E LEU* 5.4 1.1 - - + -
372E PHE* 3.9 23.8 - - + -
420E ARG* 5.1 0.2 - - - -
----------------------------------------------------------
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Residues in contact with ASN 57 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
53D THR 2.8 12.8 + - - +
54D GLU* 3.3 10.7 + - - +
56D LEU* 1.3 78.1 - - - +
58D GLN* 1.3 64.3 + - - +
60D TRP* 3.1 34.4 + - - +
61D LYS* 3.2 47.9 + - - +
372E PHE* 4.0 7.6 - - + -
373E TRP* 3.5 33.4 - - + -
420E ARG* 3.1 13.0 + - - -
----------------------------------------------------------
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Residues in contact with GLN 58 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
319A PRO* 4.8 13.9 - - - +
322A PRO* 3.6 32.9 - - + +
54D GLU* 2.9 39.3 + - - +
55D ILE* 4.4 4.3 - - - +
57D ASN* 1.3 77.1 - - - +
59D GLU* 1.3 61.4 + - + +
61D LYS* 3.3 49.2 + - - +
62D GLN* 3.7 17.0 + - - +
----------------------------------------------------------
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Residues in contact with GLU 59 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
55D ILE* 3.2 22.3 + - - +
56D LEU* 3.2 12.4 + - - +
58D GLN* 1.3 76.2 - - + +
60D TRP* 1.3 63.2 + - - +
62D GLN* 3.6 26.6 + - - +
63D ARG* 3.4 31.8 + - - +
201E ARG* 3.0 54.3 + - - +
----------------------------------------------------------
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Residues in contact with TRP 60 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
56D LEU 2.9 12.0 + - - +
57D ASN* 3.1 37.6 + - - +
59D GLU* 1.3 75.7 - - - +
61D LYS* 1.3 71.2 + - + +
63D ARG* 2.9 47.2 + - + +
103E TRP 3.6 12.1 + - - -
104E HIS* 3.2 30.2 + - - -
105E SER 3.8 7.5 + - - -
106E LYS* 4.1 3.7 - - - +
107E GLU* 3.4 56.1 - - + -
420E ARG* 3.6 42.6 - - - +
----------------------------------------------------------
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Residues in contact with LYS 61 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
54D GLU* 5.1 0.6 + - - -
57D ASN* 3.2 33.0 + - - +
58D GLN* 3.3 36.5 + - - +
60D TRP* 1.3 90.2 - - + +
62D GLN* 1.3 60.8 + - + +
63D ARG 3.3 1.5 + - - -
64D ARG* 3.8 29.4 + - - +
----------------------------------------------------------
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Residues in contact with GLN 62 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
58D GLN* 4.0 15.8 + - - +
59D GLU* 3.6 20.5 + - - +
60D TRP 3.2 0.8 - - - -
61D LYS* 1.3 77.4 - - + +
63D ARG* 1.3 59.5 + - + +
64D ARG* 3.8 7.1 + - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il