Contacts of the helix formed by residues 13 - 62 (chain G) in PDB entry 5LS6
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with VAL 13 (chain G).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
11G GLY 5.5 0.2 - - - -
12G PRO* 1.3 83.3 - - + +
14G CYS* 1.3 66.5 + - + +
15G TRP 3.4 0.7 - - - -
16G ARG* 3.5 27.3 + - - +
17G LYS* 3.4 24.5 + - + +
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Residues in contact with CYS 14 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
11G GLY* 3.4 21.5 + - - +
12G PRO 3.3 1.2 - - - -
13G VAL* 1.3 81.0 - - + +
15G TRP* 1.3 64.2 - - + +
17G LYS* 3.3 9.3 + - - +
18G ARG* 3.1 72.6 + - - +
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Residues in contact with TRP 15 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
10G LYS* 3.5 40.5 - - + +
11G GLY 3.3 24.0 - - - -
12G PRO 3.6 6.7 + - - +
13G VAL 3.4 0.6 - - - -
14G CYS* 1.3 78.7 - - + +
16G ARG* 1.3 56.7 + - - +
18G ARG* 3.5 17.8 + - + +
19G VAL* 2.9 34.9 + - - +
178G LEU* 4.1 20.2 - - + -
181G TYR* 5.4 4.0 - + - -
182G ASN* 3.3 32.8 - - - -
220G SER* 5.3 4.3 - - - -
222G LYS* 4.1 27.4 - - + +
223G ILE* 3.2 36.1 - - + -
226G ALA* 3.6 18.6 - - + -
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Residues in contact with ARG 16 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
12G PRO 4.7 9.7 + - - +
13G VAL* 3.5 25.5 + - - +
14G CYS 3.2 0.6 - - - -
15G TRP* 1.3 76.7 - - - +
17G LYS* 1.3 57.1 + - + +
19G VAL* 3.7 5.3 - - - +
20G LYS* 2.8 38.6 + - - +
162G GLU* 5.9 1.0 + - - -
226G ALA* 4.0 11.3 - - - +
229G SER* 3.0 41.4 + - - +
230G MET* 4.3 19.3 - - - +
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Residues in contact with LYS 17 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
13G VAL* 3.4 14.2 + - + +
14G CYS* 3.3 12.4 + - - +
16G ARG* 1.3 78.2 - - + +
18G ARG* 1.3 58.9 + - + +
20G LYS* 4.8 16.5 - - + +
21G SER* 3.2 28.4 + - - +
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Residues in contact with ARG 18 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
10G LYS* 5.7 7.1 - - - +
14G CYS* 3.1 43.9 + - - +
15G TRP* 3.7 19.9 - - + +
17G LYS* 1.3 78.5 - - + +
19G VAL* 1.3 60.1 + - - +
21G SER* 4.6 3.5 - - - -
22G GLU* 3.4 32.7 + - - +
178G LEU* 5.2 4.9 - - + +
181G TYR* 2.8 54.2 + - + +
182G ASN 5.7 3.2 - - - -
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Residues in contact with VAL 19 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
15G TRP* 2.9 22.8 + - + +
16G ARG* 3.7 5.2 - - - +
18G ARG* 1.3 76.6 - - - +
20G LYS* 1.3 56.8 + - - +
22G GLU* 3.1 6.2 + - - +
23G TYR* 2.7 34.9 + - + +
163G CYS* 6.1 0.4 - - - -
174G LEU* 3.8 16.8 - - + +
178G LEU* 3.5 39.9 - - + -
226G ALA* 4.7 7.9 - - + +
227G ILE* 3.8 24.0 - - + -
230G MET* 4.7 14.8 - - + -
231G PHE* 5.3 3.6 - - + -
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Residues in contact with LYS 20 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
16G ARG 2.8 21.8 + - - +
17G LYS* 4.8 15.3 - - + +
19G VAL* 1.3 75.4 - - - +
21G SER* 1.3 60.9 + - - +
23G TYR* 3.6 6.9 - - - +
24G MET* 3.0 68.0 + - + +
162G GLU* 5.9 4.0 - - - -
163G CYS* 4.2 10.3 - - - -
230G MET* 3.7 31.6 - - + -
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Residues in contact with SER 21 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
17G LYS* 3.2 22.8 + - - +
18G ARG* 4.6 3.8 - - - -
19G VAL 3.3 0.8 - - - -
20G LYS* 1.3 78.5 - - - +
22G GLU* 1.3 66.7 + - - +
24G MET* 3.7 7.0 + - - +
25G ARG* 3.1 23.4 + - - +
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Residues in contact with GLU 22 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
18G ARG 3.4 16.8 + - - +
19G VAL* 3.1 10.0 + - - +
21G SER* 1.3 77.3 - - - +
23G TYR* 1.3 54.7 + - - +
25G ARG* 2.7 47.1 + - - +
26G LEU* 2.7 42.1 + - + +
174G LEU* 4.2 9.6 - - + -
177G ALA* 3.7 27.3 - - + +
178G LEU* 4.9 2.6 - - - +
181G TYR* 3.2 43.5 - - - +
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Residues in contact with TYR 23 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
19G VAL* 2.7 20.5 + - + +
20G LYS* 3.6 8.7 - - - +
22G GLU* 1.3 73.0 - - - +
24G MET* 1.3 76.3 + - + +
26G LEU* 3.2 5.8 + - - +
27G ARG* 3.0 57.4 + - + +
163G CYS* 3.4 37.9 - - + -
164G GLY 4.1 1.8 + - - -
165G PHE* 2.4 50.3 + - - +
166G ILE* 4.4 8.7 - - + -
170G ILE* 4.3 17.7 - - + -
174G LEU* 4.0 20.5 - - + +
231G PHE* 4.7 3.8 - + + -
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Residues in contact with MET 24 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
20G LYS* 3.0 64.1 + - + +
21G SER* 3.9 7.2 - - - +
22G GLU 3.3 0.2 - - - -
23G TYR* 1.3 89.4 - - + +
25G ARG* 1.3 60.7 + - - +
27G ARG* 3.9 5.4 + - - +
28G GLN* 3.5 24.4 + - - +
163G CYS* 6.5 0.2 - - - -
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Residues in contact with ARG 25 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
21G SER 3.1 16.7 + - - +
22G GLU* 2.7 45.9 + - - +
24G MET* 1.3 74.3 - - - +
26G LEU* 1.3 72.3 + - - +
28G GLN* 3.3 18.0 + - + +
29G LEU* 3.4 26.0 + - + +
177G ALA* 4.9 6.7 + - - +
180G GLN* 6.3 0.6 - - - +
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Residues in contact with LEU 26 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
22G GLU* 2.7 36.3 + - + +
23G TYR* 3.2 5.8 + - - +
25G ARG* 1.3 80.0 - - - +
27G ARG* 1.3 63.7 + - + +
29G LEU* 4.2 16.8 - - + +
30G LYS* 3.3 25.3 + - - +
170G ILE* 5.4 8.5 - - + +
173G GLU* 3.9 22.9 - - + +
174G LEU* 3.8 37.5 - - + +
177G ALA* 3.8 25.1 - - + -
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Residues in contact with ARG 27 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
23G TYR* 3.0 52.0 + - + +
24G MET* 4.2 5.6 - - - +
25G ARG 3.4 0.2 - - - -
26G LEU* 1.3 74.8 - - - +
28G GLN* 1.3 59.3 + - - +
30G LYS* 4.2 4.2 - - - +
31G ARG* 3.2 29.4 + - - +
164G GLY* 5.3 1.2 - - - -
165G PHE* 3.7 37.0 - - - +
170G ILE* 4.3 19.7 - - + +
352H ILE* 5.6 2.0 - - - +
355H ARG* 3.5 32.7 - - - +
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Residues in contact with GLN 28 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
24G MET 3.5 12.8 + - - +
25G ARG* 3.3 14.8 + - + +
26G LEU 3.3 1.4 - - - -
27G ARG* 1.3 75.8 - - - +
29G LEU* 1.3 61.6 + - - +
31G ARG* 3.2 30.6 + - - +
32G PHE* 3.0 46.5 + - + -
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Residues in contact with LEU 29 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
25G ARG* 3.4 28.8 + - + +
26G LEU* 4.2 16.8 - - + +
28G GLN* 1.3 75.9 - - + +
30G LYS* 1.3 69.8 + - + +
32G PHE* 3.7 12.6 - - + +
33G ARG* 3.0 28.4 + - + +
173G GLU* 6.1 1.1 - - - +
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Residues in contact with LYS 30 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
26G LEU 3.3 17.6 + - - +
27G ARG* 4.2 5.6 - - - +
29G LEU* 1.3 88.7 - - + +
31G ARG* 1.3 50.9 + - - +
33G ARG* 3.2 11.8 + - + +
34G ARG* 2.6 67.4 + - + +
169G GLU* 3.4 36.9 + - - +
170G ILE* 4.7 10.7 - - + +
173G GLU* 3.1 36.8 + - - +
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Residues in contact with ARG 31 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
27G ARG 3.2 18.0 + - - +
28G GLN* 3.2 25.0 + - - +
30G LYS* 1.3 77.9 - - - +
32G PHE* 1.3 90.2 + - - +
34G ARG* 4.2 6.5 - - - -
35G ALA* 3.0 32.3 + - + +
396H PRO* 5.9 8.7 - - + -
398H LYS* 3.4 34.7 - - - +
----------------------------------------------------------
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Residues in contact with PHE 32 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
28G GLN* 3.0 45.7 + - + +
29G LEU* 3.9 10.1 - - + +
30G LYS 3.2 0.2 - - - -
31G ARG* 1.3 105.5 - - - +
33G ARG* 1.3 62.9 + - - +
35G ALA* 4.2 8.7 + - + +
36G ASP* 4.3 7.4 + - - +
----------------------------------------------------------
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Residues in contact with ARG 33 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
29G LEU* 3.0 20.1 + - + +
30G LYS* 3.8 11.4 - - + +
32G PHE* 1.3 75.2 - - - +
34G ARG* 1.3 71.9 + - + +
36G ASP* 3.6 17.9 - - - +
37G GLU* 3.8 35.6 + - + +
----------------------------------------------------------
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Residues in contact with ARG 34 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
30G LYS* 2.6 53.8 + - + +
31G ARG* 4.2 5.6 - - + -
33G ARG* 1.3 81.1 - - + +
35G ALA* 1.3 53.3 + - - +
36G ASP 2.8 6.1 + - - -
37G GLU* 2.6 62.1 + - - +
38G VAL* 2.9 21.6 + - + +
169G GLU* 3.3 34.2 + - - -
335H LYS* 5.8 0.8 - - - +
336H MET* 3.9 38.2 - - - +
351H THR* 4.2 14.6 - - - +
352H ILE 5.5 2.0 - - - -
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Residues in contact with ALA 35 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
31G ARG* 3.0 24.3 + - + +
32G PHE* 4.4 8.7 - - + +
33G ARG 3.5 0.6 - - - -
34G ARG* 1.3 74.5 - - - +
36G ASP* 1.3 58.5 + - - +
38G VAL* 3.6 14.1 - - + +
39G LYS* 3.4 14.2 + - - +
395H ASP* 3.2 26.7 - - + +
396H PRO* 4.9 12.1 - - + -
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Residues in contact with ASP 36 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
32G PHE 4.3 5.0 + - - +
33G ARG* 3.6 14.6 + - - +
34G ARG 2.8 0.8 + - - -
35G ALA* 1.3 77.4 - - - +
37G GLU* 1.3 63.3 + - + +
38G VAL 3.6 0.2 + - - -
39G LYS* 3.6 8.8 + - - +
40G SER* 3.6 16.6 + - - -
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Residues in contact with GLU 37 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
33G ARG* 3.8 35.2 + - - +
34G ARG* 2.6 47.1 + - - +
36G ASP* 1.3 72.7 - - + +
38G VAL* 1.3 58.3 + - - +
40G SER* 3.3 9.4 + - - -
41G MET* 3.1 28.5 + - - +
336H MET* 3.8 18.4 - - + +
----------------------------------------------------------
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Residues in contact with VAL 38 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
34G ARG* 2.9 28.2 + - + +
35G ALA* 3.6 23.3 - - + +
37G GLU* 1.3 67.5 - - - +
39G LYS* 1.3 62.0 + - - +
40G SER 3.1 1.8 - - - -
41G MET* 3.5 8.2 - - - +
42G PHE* 2.7 60.7 + - + -
336H MET* 3.9 20.9 - - - -
352H ILE 5.3 1.1 - - - +
353H LEU* 4.3 28.5 - - + +
395H ASP* 5.2 2.9 - - - +
396H PRO* 5.3 7.9 - - + -
----------------------------------------------------------
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Residues in contact with LYS 39 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
35G ALA 3.4 14.5 + - - +
36G ASP* 3.6 9.2 - - - +
38G VAL* 1.3 83.8 - - - +
40G SER* 1.3 61.5 + - - +
42G PHE* 3.8 8.3 - - - +
43G SER* 3.3 22.5 + - - -
394H GLU* 3.8 30.5 - - + +
395H ASP* 3.4 34.6 + - - +
----------------------------------------------------------
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Residues in contact with SER 40 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
36G ASP 3.6 8.1 + - - -
37G GLU* 3.3 11.6 + - - -
38G VAL 3.1 0.6 - - - -
39G LYS* 1.3 77.1 - - - +
41G MET* 1.3 59.6 + - - +
43G SER* 3.6 3.8 + - - -
44G SER* 3.0 28.1 + - - -
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Residues in contact with MET 41 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
37G GLU 3.1 17.0 + - - +
38G VAL* 3.5 9.4 - - - +
40G SER* 1.3 73.7 - - - +
42G PHE* 1.3 56.0 + - - +
44G SER* 2.9 10.5 + - - -
45G ASN* 2.7 39.4 + - + +
318H LEU* 4.3 14.8 - - + -
332H LYS* 3.9 33.9 - - + +
336H MET* 3.6 31.4 - - + +
337H GLU* 6.0 1.6 - - - -
353H LEU* 4.5 6.1 - - + -
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Residues in contact with PHE 42 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
38G VAL* 2.7 45.3 + - + +
39G LYS* 3.8 8.1 - - - +
41G MET* 1.3 70.7 - - - +
43G SER* 1.3 57.7 + - - +
45G ASN* 3.3 7.0 + - + +
46G ARG* 2.9 28.2 + - - +
315H LEU* 4.9 8.1 - - + -
318H LEU* 4.1 12.1 - - + -
330H CYS* 3.8 25.4 - - + -
353H LEU* 3.5 35.9 - - + -
354H GLY 4.3 1.1 - - - -
356H PHE* 6.1 2.5 - + - -
393H VAL 5.4 10.1 - - - +
394H GLU* 6.0 2.0 - - - -
395H ASP* 5.3 6.5 - - - -
396H PRO* 6.1 0.9 - - + -
397H HIS* 4.3 28.9 - + - -
----------------------------------------------------------
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Residues in contact with SER 43 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
39G LYS 3.3 14.7 + - - -
40G SER* 4.2 3.4 - - - -
41G MET 3.2 0.6 - - - -
42G PHE* 1.3 77.0 - - - +
44G SER* 1.3 63.8 + - - +
45G ASN 3.4 0.2 - - - -
46G ARG* 3.7 11.3 - - - +
47G GLN* 3.5 20.1 + - - +
394H GLU* 5.9 5.9 - - - +
----------------------------------------------------------
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Residues in contact with SER 44 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
40G SER* 3.0 14.4 + - - -
41G MET* 2.9 15.3 + - - -
43G SER* 1.3 75.4 - - - +
45G ASN* 1.3 61.5 + - - +
47G GLN* 3.2 20.9 - - - +
48G LYS* 3.3 16.1 + - - +
----------------------------------------------------------
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Residues in contact with ASN 45 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
41G MET* 2.7 18.3 + - + +
42G PHE* 3.4 9.8 - - + +
44G SER* 1.3 69.8 - - - +
46G ARG* 1.3 53.5 + - - +
47G GLN 3.1 1.3 - - - -
48G LYS* 2.9 14.9 + - - +
49G ILE* 2.7 51.0 + - - +
315H LEU* 2.7 30.1 + - - +
317H ASP* 3.2 32.1 + - - +
318H LEU* 3.4 27.8 - - + +
----------------------------------------------------------
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Residues in contact with ARG 46 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
42G PHE 2.9 16.8 + - - +
43G SER* 3.7 14.1 - - - +
45G ASN* 1.3 74.8 - - - +
47G GLN* 1.3 57.0 + - - +
49G ILE* 3.3 40.7 - - - +
50G LEU* 2.9 41.8 + - + +
53G THR* 5.6 0.4 + - - -
315H LEU* 4.9 2.4 - - - +
373H TRP 2.6 29.9 + - - -
374H GLN* 2.7 24.0 + - - +
375H LYS* 4.2 4.0 - - - +
391H LEU* 3.5 27.5 + - - +
392H GLU* 3.9 29.4 + - + +
----------------------------------------------------------
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Residues in contact with GLN 47 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
43G SER 3.5 11.2 + - - +
44G SER* 3.2 15.7 + - - +
45G ASN 3.1 0.6 - - - -
46G ARG* 1.3 76.9 - - - +
48G LYS* 1.3 65.5 + - + +
50G LEU* 3.8 17.8 - - - +
51G GLU* 3.1 43.3 + - - +
----------------------------------------------------------
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Residues in contact with LYS 48 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
44G SER* 3.3 15.8 + - - +
45G ASN* 2.9 17.1 + - - +
47G GLN* 1.3 78.3 - - + +
49G ILE* 1.3 63.1 + - + +
51G GLU* 3.3 7.9 + - - +
52G ARG* 3.0 54.4 + - - +
317H ASP* 2.5 33.3 + - - +
339H ASP* 5.6 7.7 + - - -
----------------------------------------------------------
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Residues in contact with ILE 49 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
45G ASN* 2.7 43.0 + - - +
46G ARG* 3.3 39.7 - - - +
48G LYS* 1.3 72.0 - - - +
50G LEU* 1.3 51.0 + - - +
52G ARG* 3.2 1.2 + - - +
53G THR* 2.6 45.8 + - + +
246H LEU* 3.9 9.2 - - + -
315H LEU* 3.9 19.7 - - + -
316H GLY* 3.3 31.0 - - - +
374H GLN* 3.4 22.0 - - + +
----------------------------------------------------------
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Residues in contact with LEU 50 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
46G ARG* 2.9 28.2 + - + +
47G GLN* 3.8 20.0 - - - +
49G ILE* 1.3 78.0 - - - +
51G GLU* 1.3 65.6 + - + +
53G THR* 3.0 16.9 + - - -
54G GLU* 3.1 27.0 + - + +
373H TRP* 4.4 10.1 - - + -
----------------------------------------------------------
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Residues in contact with GLU 51 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
47G GLN* 3.1 37.6 + - - +
48G LYS* 3.6 6.9 - - - +
50G LEU* 1.3 77.5 - - + +
52G ARG* 1.3 66.3 + - + +
54G GLU* 3.1 21.6 - - - +
55G ILE* 3.2 14.9 + - + +
----------------------------------------------------------
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Residues in contact with ARG 52 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
48G LYS* 3.0 39.8 + - - +
49G ILE 3.9 1.8 - - - +
51G GLU* 1.3 75.3 - - + +
53G THR* 1.3 61.3 + - - +
54G GLU 3.0 1.6 - - - -
55G ILE* 2.8 30.0 + - + +
56G LEU* 3.2 16.1 + - - +
245H ASP* 4.2 15.4 + - - -
246H LEU* 4.0 25.4 - - + +
247H LEU* 3.7 40.3 - - + +
250H LYS* 4.9 2.8 - - - +
316H GLY 3.5 19.3 + - - -
317H ASP* 3.1 36.6 + - - -
341H ASP* 5.4 4.8 + - - -
----------------------------------------------------------
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Residues in contact with THR 53 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
49G ILE* 2.6 40.8 + - + +
50G LEU* 3.0 16.8 + - - -
52G ARG* 1.3 71.7 - - - +
54G GLU* 1.3 55.9 + - - +
56G LEU* 3.5 8.8 + - + -
57G ASN* 3.0 22.5 + - - +
246H LEU* 4.0 23.3 - - + -
372H PHE* 3.3 41.2 - - + +
373H TRP* 3.5 25.0 + - - -
374H GLN* 4.6 1.6 - - - +
----------------------------------------------------------
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Residues in contact with GLU 54 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
50G LEU* 3.1 27.8 + - + +
51G GLU* 3.1 16.6 - - - +
52G ARG 3.0 0.6 - - - -
53G THR* 1.3 74.8 + - - +
55G ILE* 1.3 58.2 + - + +
57G ASN* 3.2 17.8 + - - +
58G GLN* 2.9 61.9 + - + +
61G LYS* 5.2 0.3 + - - -
373H TRP* 3.9 12.0 - - + -
----------------------------------------------------------
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Residues in contact with ILE 55 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
51G GLU* 3.2 17.8 + - + +
52G ARG* 2.8 16.7 + - + +
54G GLU* 1.3 71.9 - - + +
56G LEU* 1.3 61.3 - - + +
58G GLN* 4.1 5.6 - - - +
59G GLU* 3.3 28.5 + - + +
201H ARG* 3.5 31.2 - - - +
247H LEU* 4.4 19.3 - - + -
----------------------------------------------------------
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Residues in contact with LEU 56 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
52G ARG 3.2 10.7 + - - +
53G THR* 3.7 13.2 - - + +
55G ILE* 1.3 74.8 - - + +
57G ASN* 1.3 59.5 + - - +
59G GLU* 3.6 7.3 + - - +
60G TRP* 3.1 26.2 + - - +
63G ARG* 4.2 5.7 + - - +
200H PRO* 4.0 23.3 - - + +
201H ARG* 3.3 37.5 - - - +
246H LEU* 3.5 33.4 - - + +
247H LEU* 5.7 1.3 - - + -
372H PHE* 3.8 19.2 - - + -
420H ARG* 4.4 0.7 + - - -
----------------------------------------------------------
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Residues in contact with ASN 57 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
53G THR 3.0 18.2 + - - +
54G GLU* 3.2 15.8 + - - +
56G LEU* 1.3 77.6 - - - +
58G GLN* 1.3 62.7 + - - +
60G TRP* 3.3 21.2 + - - +
61G LYS* 3.3 38.1 + - - +
372H PHE* 3.7 4.0 - - + -
373H TRP* 3.5 30.3 - - + -
420H ARG* 2.9 34.9 + - - +
----------------------------------------------------------
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Residues in contact with GLN 58 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
54G GLU* 2.9 44.4 + - + +
55G ILE* 4.1 5.8 - - - +
56G LEU 3.4 0.2 - - - -
57G ASN* 1.3 75.0 - - - +
59G GLU* 1.3 63.4 + - + +
61G LYS* 3.2 50.9 + - - +
62G GLN* 3.8 16.8 + - - +
----------------------------------------------------------
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Residues in contact with GLU 59 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
55G ILE* 3.3 20.6 + - + +
56G LEU* 3.8 8.7 - - + +
57G ASN 3.4 0.2 - - - -
58G GLN* 1.3 78.1 - - + +
60G TRP* 1.3 57.8 + - - +
61G LYS 3.5 0.4 + - - -
62G GLN* 3.8 23.3 + - - +
63G ARG* 3.5 41.5 + - - +
201H ARG* 2.9 49.9 + - - +
----------------------------------------------------------
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Residues in contact with TRP 60 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
56G LEU 3.1 10.8 + - - +
57G ASN* 3.3 19.5 - - - +
58G GLN 3.2 0.6 - - - -
59G GLU* 1.3 74.5 - - - +
61G LYS* 1.3 74.7 + - + +
62G GLN 3.2 2.0 - - - -
63G ARG* 3.2 41.4 + - + +
64G ARG* 4.5 3.7 + - - -
103H TRP 3.8 11.1 + - - -
104H HIS* 3.5 27.9 + - - -
105H SER 3.7 9.6 + - - -
106H LYS* 3.8 5.3 - - - +
107H GLU* 3.3 50.9 - - + -
420H ARG* 3.1 58.3 - - - +
----------------------------------------------------------
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Residues in contact with LYS 61 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
54G GLU* 5.2 0.4 + - - -
57G ASN* 3.3 32.5 + - - +
58G GLN* 3.2 40.3 + - - +
60G TRP* 1.3 90.9 - - + +
62G GLN* 1.3 57.8 + - + +
63G ARG 3.4 0.2 - - - -
64G ARG* 2.7 40.2 + - - +
107H GLU* 6.1 0.7 - - - -
----------------------------------------------------------
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Residues in contact with GLN 62 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
58G GLN* 3.8 14.8 + - - +
59G GLU* 3.8 23.7 - - - +
60G TRP 3.2 1.2 - - - -
61G LYS* 1.3 77.6 - - + +
63G ARG* 1.3 61.1 + - + +
64G ARG* 4.0 6.9 + - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il