Contacts of the helix formed by residues 508 - 542 (chain A) in PDB entry 5MKE


Residue contacts within the protein are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332). A short description of the analytical approach is given at the end of the page.
For CSU analysis of other PDB entry

Note:
Non-standard 3 letter residue codes indicate a heterogroup. To identify and analyse, use LPC software

Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB   - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC   - hydrophobic-hydrophilic contact (destabilizing contact)
+/-  - indicates presence/absence of a specific contacts
*    - indicates residues forming contacts  by their side chain
       (including CA atoms)
Residues in contact with ASN 508 (chain A).
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    502A  TYR*     2.2    72.1    +      -       +      +
    503A  PHE*     4.0     3.0    -      -       -      +
    504A  ARG      4.8     1.0    -      -       -      +
    505A  SER*     4.7     2.0    -      -       -      -
    506A  PHE*     3.2    22.5    -      -       -      +
    507A  TRP*     1.3    71.5    -      -       -      +
    509A  CYS*     1.3    82.5    +      -       -      +
    510A  LEU      3.3     1.6    -      -       -      -
    511A  ASP*     3.1    17.6    +      -       -      +
    512A  VAL*     3.3    14.9    +      -       -      +
----------------------------------------------------------
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Residues in contact with CYS 509 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    502A  TYR*     6.0     2.0    -      -       +      -
    508A  ASN*     1.3    89.0    +      -       -      +
    510A  LEU*     1.3    52.3    +      -       +      +
    512A  VAL*     2.7    18.9    +      -       -      +
    513A  VAL*     2.3    55.5    +      -       +      +
----------------------------------------------------------
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Residues in contact with LEU 510 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    506A  PHE      4.3    18.2    -      -       -      +
    507A  TRP*     5.3     3.4    -      -       -      +
    508A  ASN      3.3     1.7    -      -       -      +
    509A  CYS*     1.3    76.5    -      -       +      +
    511A  ASP*     1.3    69.3    +      -       -      +
    513A  VAL*     3.1    27.1    +      -       +      +
    514A  ILE*     4.0     3.5    +      -       -      +
    568A  PHE*     4.1    35.6    -      -       +      +
    571A  ILE*     6.0     6.1    -      -       +      -
    575A  LYS*     5.4     6.7    -      -       -      +
   1008A  PLM      5.8    12.6    -      -       +      -
----------------------------------------------------------
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Residues in contact with ASP 511 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    507A  TRP*     2.7    19.6    -      -       -      +
    508A  ASN*     3.1     8.6    +      -       -      +
    510A  LEU*     1.3    75.5    -      -       -      +
    512A  VAL*     1.3    64.1    +      -       +      +
    514A  ILE*     3.0    24.4    -      -       -      +
    515A  VAL*     4.5     1.0    -      -       -      +
    572A  LYS*     4.0    27.1    +      -       -      +
    575A  LYS*     2.4    33.0    +      -       -      +
----------------------------------------------------------
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Residues in contact with VAL 512 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    491A  GLU*     4.9    20.0    -      -       +      -
    495A  ILE*     6.3     3.1    -      -       +      -
    502A  TYR*     6.3     3.8    -      -       +      -
    508A  ASN      3.6     7.0    -      -       -      +
    509A  CYS*     2.7    36.7    +      -       +      +
    511A  ASP*     1.3    77.1    -      -       +      +
    513A  VAL*     1.3    63.2    +      -       -      +
    514A  ILE      3.3     2.0    -      -       -      -
    515A  VAL*     3.1    33.1    -      -       +      +
    516A  VAL*     3.9     6.2    +      -       -      +
----------------------------------------------------------
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Residues in contact with VAL 513 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    509A  CYS*     2.3    58.0    +      -       -      +
    510A  LEU*     3.1    21.7    +      -       +      +
    512A  VAL*     1.3    67.8    -      -       -      +
    514A  ILE*     1.3    66.3    +      -       -      +
    515A  VAL      2.9     1.6    +      -       -      -
    516A  VAL*     3.2    10.8    +      -       +      +
    517A  LEU*     3.0    45.1    +      -       +      +
    568A  PHE*     4.9    15.0    -      -       +      -
   1007A  PX6      5.1    10.1    -      -       +      -
----------------------------------------------------------
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Residues in contact with ILE 514 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    230A  PHE*     6.2     4.3    -      -       +      -
    484A  ILE*     6.4     1.8    -      -       +      -
    510A  LEU      4.0     3.4    +      -       -      +
    511A  ASP      3.0    24.2    -      -       -      +
    513A  VAL*     1.3    78.9    -      -       -      +
    515A  VAL*     1.3    63.4    +      -       +      +
    517A  LEU*     2.8    16.7    +      -       +      +
    518A  SER*     2.4    51.0    +      -       -      +
    565A  THR*     5.2     3.4    -      -       -      -
    568A  PHE*     5.3     8.7    -      -       +      +
    569A  VAL*     3.8    33.0    -      -       +      +
    572A  LYS*     6.3     0.2    -      -       -      +
----------------------------------------------------------
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Residues in contact with VAL 515 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    487A  TYR      5.8     2.2    -      -       -      +
    488A  VAL*     5.4    16.2    -      -       +      +
    491A  GLU*     5.5    10.5    -      -       +      +
    492A  ILE*     5.9     5.6    -      -       +      -
    511A  ASP      4.5     0.7    -      -       -      +
    512A  VAL*     3.1    35.9    -      -       +      +
    513A  VAL      2.9     0.2    +      -       -      -
    514A  ILE*     1.3    82.9    -      -       +      +
    516A  VAL*     1.3    68.0    +      -       +      +
    518A  SER*     2.7    22.2    +      -       -      -
    519A  VAL*     3.4    15.6    +      -       +      +
----------------------------------------------------------
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Residues in contact with VAL 516 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    512A  VAL      4.6     6.5    -      -       -      +
    513A  VAL*     3.2     8.4    +      -       -      +
    515A  VAL*     1.3    78.4    -      -       +      +
    517A  LEU*     1.3    70.2    +      -       +      +
    519A  VAL*     3.1    16.3    -      -       +      +
    520A  VAL*     3.0    29.7    -      -       +      +
----------------------------------------------------------
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Residues in contact with LEU 517 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    513A  VAL*     3.0    36.9    +      -       +      +
    514A  ILE*     2.8    18.4    +      -       +      +
    516A  VAL*     1.3    83.1    -      -       +      +
    518A  SER*     1.3    66.9    +      -       -      +
    520A  VAL*     3.2    13.9    +      -       -      +
    521A  ALA*     3.7     3.6    +      -       -      +
    561A  ILE*     3.6    30.2    -      -       +      +
    564A  VAL*     5.1     5.8    -      -       +      -
    565A  THR*     3.5    30.9    -      -       +      +
    568A  PHE*     4.2    20.6    -      -       +      -
   1007A  PX6      5.3    16.2    -      -       +      -
----------------------------------------------------------
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Residues in contact with SER 518 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    484A  ILE*     4.5    16.2    -      -       -      +
    488A  VAL*     5.9     0.5    -      -       -      +
    514A  ILE*     2.4    39.8    +      -       -      +
    515A  VAL*     2.7    26.2    +      -       -      -
    517A  LEU*     1.3    69.4    -      -       -      +
    519A  VAL*     1.3    71.2    +      -       -      +
    520A  VAL      3.0     0.2    +      -       -      -
    521A  ALA*     3.3     7.1    +      -       -      +
    522A  ILE*     3.0    34.0    +      -       -      +
    565A  THR*     5.0     4.9    -      -       -      -
----------------------------------------------------------
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Residues in contact with VAL 519 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    488A  VAL*     5.0    18.2    -      -       +      -
    515A  VAL*     3.4    18.6    -      -       +      +
    516A  VAL*     3.1    21.3    -      -       +      +
    518A  SER*     1.3    85.7    +      -       -      +
    520A  VAL*     1.3    60.9    +      -       +      +
    522A  ILE*     2.9    16.3    +      -       +      -
    523A  GLY*     2.4    35.3    +      -       -      +
----------------------------------------------------------
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Residues in contact with VAL 520 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    516A  VAL*     3.0    29.8    -      -       +      +
    517A  LEU      3.4     7.2    -      -       -      +
    518A  SER      3.0     0.8    +      -       -      -
    519A  VAL*     1.3    80.1    -      -       +      +
    521A  ALA*     1.3    67.2    +      -       -      +
    524A  ILE*     3.3    25.7    +      -       +      +
    554A  TRP*     5.8     6.3    -      -       +      -
    557A  GLN*     5.7     8.5    -      -       +      +
    561A  ILE*     4.1    22.4    -      -       +      -
----------------------------------------------------------
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Residues in contact with ALA 521 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    517A  LEU      3.7     3.7    +      -       -      +
    518A  SER*     3.3     8.1    +      -       -      +
    520A  VAL*     1.3    81.1    -      -       -      +
    522A  ILE*     1.3    66.9    +      -       +      +
    525A  ASN*     2.8    31.2    +      -       -      +
    558A  PHE*     3.6    33.4    -      -       +      +
    561A  ILE*     4.8    12.2    -      -       +      +
    562A  ALA*     5.0     8.7    -      -       +      -
    565A  THR*     6.4     1.1    -      -       +      -
----------------------------------------------------------
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Residues in contact with ILE 522 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    480A  PHE*     5.3    12.6    -      -       +      -
    481A  CYS*     5.7    15.5    -      -       +      +
    484A  ILE*     4.5    23.8    -      -       +      -
    488A  VAL*     6.0     2.0    -      -       +      -
    518A  SER*     3.0    33.0    +      -       -      +
    519A  VAL*     2.9    17.6    +      -       +      +
    521A  ALA*     1.3    77.3    -      -       +      +
    523A  GLY*     1.3    64.1    +      -       -      +
    525A  ASN*     2.6    32.8    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLY 523 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    519A  VAL*     2.4    20.1    +      -       -      -
    522A  ILE*     1.3    79.5    -      -       -      +
    524A  ILE*     1.3    66.4    +      -       -      +
    525A  ASN*     3.6     0.3    +      -       -      +
    527A  TYR*     3.2    20.1    +      -       -      +
----------------------------------------------------------
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Residues in contact with ILE 524 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    520A  VAL*     3.3    16.9    +      -       +      +
    521A  ALA      3.3     2.6    +      -       -      -
    523A  GLY*     1.3    81.7    -      -       -      +
    525A  ASN*     1.3    69.9    +      -       -      +
    527A  TYR*     3.7    21.3    -      -       +      -
    528A  ARG*     3.1    37.4    +      -       +      +
    554A  TRP*     4.6    33.5    -      -       +      +
----------------------------------------------------------
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Residues in contact with ASN 525 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    480A  PHE*     6.0     4.6    -      -       -      -
    521A  ALA*     2.8    30.1    +      -       -      +
    522A  ILE*     2.6    28.3    +      -       -      +
    524A  ILE*     1.3    80.7    -      -       -      +
    526A  ILE*     1.3    91.1    +      -       +      +
    529A  THR*     2.5    42.7    +      -       +      +
    554A  TRP*     6.6     0.2    -      -       -      -
    558A  PHE*     3.9    30.9    -      -       +      -
----------------------------------------------------------
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Residues in contact with ILE 526 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    464A  ARG*     5.7    11.2    -      -       +      +
    477A  GLU*     3.7    23.1    -      -       -      +
    478A  ILE*     6.1     3.4    -      -       +      -
    522A  ILE      5.2     0.2    -      -       -      +
    523A  GLY      5.4     0.2    -      -       -      +
    525A  ASN*     1.3   102.9    +      -       +      +
    527A  TYR*     1.3    66.1    -      -       -      +
    529A  THR*     3.1     8.3    -      -       -      +
    530A  SER*     2.9    39.7    +      -       -      -
----------------------------------------------------------
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Residues in contact with TYR 527 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    523A  GLY      3.2    23.1    +      -       -      +
    524A  ILE*     3.6    23.3    -      -       +      +
    525A  ASN      3.2     0.2    -      -       -      -
    526A  ILE*     1.3    81.5    -      -       -      +
    528A  ARG*     1.3    88.5    +      -       +      +
    531A  ASN*     3.7    13.7    +      -       -      +
----------------------------------------------------------
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Residues in contact with ARG 528 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    524A  ILE*     3.1    31.1    +      -       +      +
    525A  ASN      4.3     0.2    -      -       -      +
    527A  TYR*     1.3   100.0    -      -       -      +
    529A  THR*     1.3    72.4    +      -       +      +
    531A  ASN*     3.1    22.7    -      -       -      +
    532A  VAL*     3.4    11.0    +      -       -      +
    550A  HIS*     2.9    44.2    +      -       -      -
    551A  LEU*     4.2    21.2    -      -       +      +
    554A  TRP*     3.2    30.8    -      -       +      +
----------------------------------------------------------
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Residues in contact with THR 529 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    462A  LEU      5.3     3.1    -      -       -      +
    464A  ARG*     5.9     3.7    -      -       -      +
    525A  ASN*     2.5    30.6    +      -       +      +
    526A  ILE*     3.1    11.6    -      -       -      +
    528A  ARG*     1.3    79.7    -      -       +      +
    530A  SER*     1.3    70.6    +      -       -      +
    531A  ASN      2.9     1.7    +      -       -      -
    532A  VAL*     3.1     6.4    +      -       -      +
    533A  GLU*     3.0    35.4    +      -       -      +
    548A  PHE*     6.1     6.5    -      -       +      -
    551A  LEU*     5.3    11.7    -      -       +      +
    554A  TRP*     6.2     2.9    -      -       +      -
    555A  GLN*     6.2     5.2    -      -       +      +
----------------------------------------------------------
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Residues in contact with SER 530 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    465A  TYR*     5.7     4.9    +      -       -      -
    526A  ILE*     2.9    34.6    +      -       -      +
    529A  THR*     1.3    79.0    +      -       -      +
    531A  ASN*     1.3    63.4    +      -       -      +
    533A  GLU*     3.7    17.7    +      -       -      +
    534A  VAL*     4.3     8.5    -      -       -      +
----------------------------------------------------------
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Residues in contact with ASN 531 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    527A  TYR      3.7    14.5    +      -       -      +
    528A  ARG*     3.1    17.0    +      -       -      +
    529A  THR      2.9     0.8    +      -       -      -
    530A  SER*     1.3    82.0    -      -       -      +
    532A  VAL*     1.3    80.2    +      -       -      +
    533A  GLU      3.4     0.5    +      -       -      -
    534A  VAL*     3.5    16.8    -      -       -      +
    535A  LEU*     5.5     1.7    -      -       -      +
----------------------------------------------------------
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Residues in contact with VAL 532 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    528A  ARG*     3.7     7.0    -      -       -      +
    529A  THR      3.1     3.9    +      -       -      +
    531A  ASN*     1.3    93.5    -      -       -      +
    533A  GLU*     1.3    65.8    +      -       -      +
    534A  VAL      2.9     5.3    +      -       -      -
    535A  LEU*     3.2    30.3    -      -       +      +
    536A  LEU*     3.0    32.7    +      -       +      +
    547A  ASN      5.5     1.1    -      -       -      +
    551A  LEU*     3.5    39.7    -      -       +      -
      1E  NAG      4.4    12.8    -      -       +      -
----------------------------------------------------------
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Residues in contact with GLU 533 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    462A  LEU*     3.0    22.2    -      -       +      +
    463A  ILE*     3.6    34.4    -      -       +      +
    464A  ARG*     4.5     4.3    +      -       -      +
    465A  TYR*     4.8    11.3    -      -       -      -
    529A  THR*     3.0    36.3    +      -       -      +
    530A  SER*     3.7    15.7    +      -       -      +
    531A  ASN      3.3     0.4    -      -       -      -
    532A  VAL*     1.3    76.7    -      -       -      +
    534A  VAL*     1.3    64.1    +      -       +      +
    536A  LEU*     3.2    30.9    -      -       +      +
    537A  GLN*     3.4     4.9    +      -       -      +
    548A  PHE*     5.7     3.6    -      -       +      -
----------------------------------------------------------
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Residues in contact with VAL 534 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    530A  SER      4.3     7.9    -      -       -      +
    531A  ASN      3.5    17.0    -      -       -      +
    532A  VAL      2.9     1.2    +      -       -      -
    533A  GLU*     1.3    76.2    -      -       +      +
    535A  LEU*     1.3    56.0    +      -       +      +
    537A  GLN*     2.6    37.1    +      -       -      +
    538A  PHE*     3.5    18.4    -      -       +      -
----------------------------------------------------------
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Residues in contact with LEU 535 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    531A  ASN*     5.5     1.1    -      -       -      +
    532A  VAL*     3.2    39.5    -      -       +      +
    534A  VAL*     1.3    82.0    -      -       +      +
    536A  LEU*     1.3    63.2    +      -       +      +
    538A  PHE*     2.6    34.9    +      -       +      -
    539A  LEU*     2.7    39.5    +      -       +      +
    546A  PRO*     4.9     2.2    -      -       +      -
    547A  ASN      5.9     0.9    -      -       -      +
      1E  NAG      4.2    20.4    -      -       +      -
----------------------------------------------------------
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Residues in contact with LEU 536 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    436A  PHE*     6.2     3.1    -      -       +      -
    462A  LEU*     5.7    12.1    -      -       +      -
    532A  VAL*     3.0    43.1    +      -       +      +
    533A  GLU*     3.2    30.1    -      -       +      +
    534A  VAL      3.0     0.2    -      -       -      -
    535A  LEU*     1.3    82.2    -      -       +      +
    537A  GLN*     1.3    51.2    +      -       -      +
    540A  GLU*     2.7    44.3    -      -       -      +
    546A  PRO*     4.9    15.5    -      -       +      -
    547A  ASN      5.1     2.2    -      -       -      +
    548A  PHE*     3.5    34.3    -      -       +      -
    551A  LEU*     4.2     7.0    -      -       +      -
----------------------------------------------------------
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Residues in contact with GLN 537 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    533A  GLU      3.4     4.4    +      -       -      +
    534A  VAL*     2.6    21.8    +      -       -      +
    536A  LEU*     1.3    75.6    -      -       -      +
    538A  PHE*     1.3    73.6    +      -       +      +
    540A  GLU*     4.3     6.0    +      -       -      +
    541A  ASP*     2.9    32.3    +      -       -      +
    335B  GLN*     5.7     1.6    -      -       -      +
    336B  ASP*     3.3    42.9    +      -       -      +
    337B  LEU*     4.6    15.9    -      -       -      +
----------------------------------------------------------
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Residues in contact with PHE 538 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    534A  VAL*     3.5    31.2    -      -       +      -
    535A  LEU*     2.6    19.7    +      -       +      +
    537A  GLN*     1.3    84.8    -      -       +      +
    539A  LEU*     1.3    61.6    +      -       -      +
    540A  GLU      2.9     1.1    -      -       -      -
    541A  ASP*     2.5    43.2    +      -       -      +
    542A  GLN*     3.4     4.7    +      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 539 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    320A  ARG*     6.0     0.4    -      -       -      +
    535A  LEU*     2.7    32.3    +      -       +      +
    538A  PHE*     1.3    74.5    -      -       -      +
    540A  GLU*     1.3    49.2    +      -       -      +
    542A  GLN*     5.5     0.2    -      -       -      -
    544A  THR*     2.7    58.6    -      -       +      +
    545A  PHE      4.5     2.5    -      -       -      +
    546A  PRO*     3.5    33.8    -      -       +      +
    547A  ASN      4.8     2.0    -      -       -      +
      1E  NAG      4.8    18.4    -      -       +      +
      2E  NAG      2.6    39.5    -      -       -      +
----------------------------------------------------------
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Residues in contact with GLU 540 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    314A  LEU*     5.0     4.2    -      -       -      +
    315A  LEU      4.9     1.6    -      -       -      +
    316A  LEU*     3.5    36.4    -      -       +      +
    317A  GLY*     4.2     9.2    +      -       -      +
    436A  PHE*     6.4     0.2    -      -       -      -
    536A  LEU*     2.7    35.8    +      -       +      +
    537A  GLN*     4.3     7.7    -      -       -      +
    538A  PHE      2.9     0.8    +      -       -      -
    539A  LEU*     1.3    79.7    -      -       -      +
    541A  ASP*     1.3    62.0    +      -       -      +
    542A  GLN      2.5    20.6    -      -       -      +
    544A  THR      3.4     2.6    -      -       -      +
    546A  PRO*     3.4    23.6    -      -       +      +
    337B  LEU*     4.8    20.8    -      -       -      +
----------------------------------------------------------
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Residues in contact with ASP 541 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    537A  GLN*     2.9    29.6    +      -       -      +
    538A  PHE*     2.5    38.9    +      -       -      +
    540A  GLU*     1.3    80.8    -      -       +      +
    542A  GLN*     1.3    81.2    +      -       -      +
    543A  ASN*     3.7     1.0    +      -       -      -
   1001A  NAG      5.7     0.7    -      -       -      +
    337B  LEU*     6.3     1.8    -      -       +      -
----------------------------------------------------------
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Residues in contact with GLN 542 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    317A  GLY*     4.9     0.2    -      -       -      -
    538A  PHE      3.4     3.3    +      -       -      +
    539A  LEU*     5.5     0.2    -      -       -      -
    540A  GLU      2.5    22.8    -      -       -      +
    541A  ASP*     1.3    91.9    +      -       -      +
    543A  ASN*     1.3    59.5    +      -       +      +
    544A  THR*     2.6    47.7    -      -       +      +
----------------------------------------------------------
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A short description of the analytical approach
The contact analysis used in this page is based upon the approach developed in: Sobolev V., Wade R.C., Vriend G. and Edelman M. PROTEINS (1996) 25, 120-129. Contact legitimacy depends on the hydrophobic-hydrophilic properties of the contacting atoms. In order to define it, for each inter-atomic contact, eight atom classes have been introduced:


   I  Hydrophilic      - N and O that can donate and accept hydrogen bonds
                         (e.g., oxygen of hydroxyl group of Ser. or Thr)
  II  Acceptor         - N or O that can only accept a hydrogen bond
 III  Donor            - N that can only donate a hydrogen bond
  IV  Hydrophobic      - Cl, Br, I and all C atoms that are not in
                         aromatic rings and do not have a covalent bond to
                         a N or O atom
   V  Aromatic         - C in aromatic rings irrespective of any other 
                         bonds formed by the atom
  VI  Neutral          - C atoms that have a covalent bond to at least one
                         atom of class I or two or more atoms from class II
                         or III; atoms; S, F, P, and metal atoms in all cases
 VII  Neutral-donor    - C atoms that have a covalent bond with only one
                         atom of class III
VIII  Neutral-acceptor - C atoms that have a covalent bond with only 
                         one atom of class II
For each pair of contacts the state of legitimacy is shown below:

Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
  Atomic class           I  II  III   IV   V   VI  VII  VIII
------------------------------------------------------------
   I  (Hydrophilic)      +   +    +    -   +   +    +    +
  II  (Acceptor)         +   -    +    -   +   +    +    -
 III  (Donor)            +   +    -    -   +   +    -    +
  IV  (Hydrophobic)      -   -    -    +   +   +    +    +
   V  (Aromatic)         +   +    +    +   +   +    +    +
  VI  (Neutral)          +   +    +    +   +   +    +    +
 VII  (Neutral-donor)    +   +    -    +   +   +    -    +
VIII  (Neutral-acceptor) +   -    +    +   +   +    +    -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically assigned based on the atomic coordinates. However, in three cases (see below) the automatic assignment is currently ambiguous. In these cases, the user is advised to manually analyse the full list of contacts using LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are 
   considered "aromatic" (Class V) if the ring is approximately
   planar, and "hydrophobic" (Class IV) or "neutral" (Classes
   VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
   "hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
   "carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).

Please E-mail any questions and/or suggestions concerning this page to Vladimir.Sobolev@weizmann.ac.il