Contacts of the helix formed by residues 460 - 497 (chain C) in PDB entry 5NC5
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with GLY 460 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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459C PHE* 1.3 78.3 - - - +
461C GLY* 1.3 63.4 + - - -
462C SER 3.8 0.3 + - - -
463C THR* 3.9 1.7 + - - -
464C GLY 2.9 19.2 + - - -
468C ARG* 5.4 0.7 - - - -
868C LEU* 5.8 2.9 - - - +
872C GLN* 4.0 17.2 + - - +
1104C D10 6.1 1.6 - - - -
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Residues in contact with GLY 461 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
95C GLU* 5.5 7.3 + - - +
96C SER* 3.5 32.8 + - - -
460C GLY* 1.3 71.6 - - - -
462C SER* 1.3 64.3 + - - -
465C ALA* 3.2 20.8 + - - +
468C ARG* 4.6 3.4 + - - +
865C GLN* 4.5 5.2 - - - -
868C LEU* 5.5 8.7 - - - -
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Residues in contact with SER 462 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
38C ILE* 3.0 37.2 + - - +
40C PRO* 4.2 8.3 - - - +
96C SER* 4.2 1.1 + - - -
461C GLY* 1.3 73.0 - - - -
463C THR* 1.3 66.1 + - - +
465C ALA* 3.1 4.7 + - - +
466C ILE* 3.0 28.2 + - - +
563C PHE* 4.3 16.6 - - - -
671C ILE* 4.2 6.7 - - - +
674C LEU* 5.4 0.2 - - - +
865C GLN* 3.2 30.0 + - - +
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Residues in contact with THR 463 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
460C GLY 4.3 1.7 + - - -
462C SER* 1.3 77.9 + - - +
464C GLY* 1.3 63.4 + - - +
466C ILE* 3.0 10.9 + - - +
467C TYR* 2.8 54.2 + - + +
563C PHE* 3.7 9.0 - - - -
865C GLN* 4.4 3.3 + - - -
868C LEU* 5.3 1.6 - - - +
869C SER* 3.1 40.1 + - - +
872C GLN* 3.4 14.4 + - - +
925C VAL* 3.8 16.2 - - + -
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Residues in contact with GLY 464 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
456C MET 4.6 0.6 - - - +
459C PHE* 3.8 21.8 - - - -
460C GLY 2.9 20.9 + - - -
461C GLY 3.8 0.7 - - - -
462C SER 3.3 0.4 - - - -
463C THR* 1.3 75.9 - - - +
465C ALA* 1.3 62.1 + - - +
467C TYR* 3.1 13.8 + - - +
468C ARG* 3.1 33.7 + - - +
872C GLN* 4.4 0.8 - - - +
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Residues in contact with ALA 465 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
36C PRO* 4.4 2.9 - - + +
37C THR 4.1 10.8 - - - +
38C ILE* 4.1 22.9 - - + +
96C SER* 5.0 3.1 - - - +
461C GLY 3.2 11.3 + - - +
462C SER* 3.1 10.4 + - - +
464C GLY* 1.3 76.1 - - - +
466C ILE* 1.3 62.4 + - - +
468C ARG* 3.4 23.9 + - - +
469C GLN* 3.7 21.1 + - - +
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Residues in contact with ILE 466 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
35C TYR* 5.7 1.8 - - + -
38C ILE* 3.8 24.7 - - + -
393C LEU* 3.8 22.9 - - + -
462C SER 3.0 16.0 + - - +
463C THR* 3.4 11.0 - - - +
465C ALA* 1.3 76.0 - - - +
467C TYR* 1.3 68.5 + - + +
468C ARG 3.0 1.2 + - - -
469C GLN* 3.1 18.5 + - - +
470C PHE* 3.7 19.8 - - + -
563C PHE* 4.6 7.0 - - + -
564C LEU* 4.2 27.8 - - + -
925C VAL* 3.9 31.2 - - + -
926C TYR* 5.1 2.5 - - + -
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Residues in contact with TYR 467 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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456C MET* 3.2 55.9 - - + +
459C PHE* 4.3 7.0 - + + -
463C THR* 2.8 43.9 + - + +
464C GLY* 3.1 7.8 + - - +
466C ILE* 1.3 73.4 - - - +
468C ARG* 1.3 59.1 + - - +
470C PHE* 3.3 6.3 + - - +
471C SER* 3.0 26.1 + - - -
869C SER 4.5 2.3 + - - -
872C GLN* 3.9 16.7 + - + +
873C ALA* 5.1 1.7 - - - +
876C LEU* 4.0 24.1 - - + +
925C VAL* 4.3 9.9 - - + -
928C GLN* 2.3 34.7 + - + -
929C VAL* 3.7 20.9 - - + -
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Residues in contact with ARG 468 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
388C PHE* 4.0 10.4 - - + -
457C ALA* 2.6 61.4 + - + +
459C PHE 3.0 21.8 + - - -
460C GLY* 5.4 1.4 - - - -
461C GLY 4.6 3.4 + - - +
464C GLY* 3.1 16.7 + - - +
465C ALA* 3.4 32.0 + - - +
466C ILE 3.0 0.8 + - - -
467C TYR* 1.3 78.4 - - - +
469C GLN* 1.3 70.3 + - - +
471C SER* 3.9 6.7 - - - -
472C ILE* 3.1 26.0 + - - +
1101C DD9 4.1 22.0 - - + +
1104C D10 3.9 20.7 - - - +
1108C D12 5.9 1.6 - - - -
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Residues in contact with GLN 469 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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36C PRO* 3.6 32.4 - - + +
388C PHE* 3.7 27.1 - - - +
389C SER* 4.5 2.1 + - - +
391C ASN* 3.0 22.8 + - - +
393C LEU* 3.5 31.9 - - + -
394C THR* 3.6 19.5 - - + +
465C ALA 3.7 14.5 + - - +
466C ILE 3.1 4.8 + - - +
468C ARG* 1.3 80.9 - - - +
470C PHE* 1.3 56.6 + - - +
472C ILE* 3.9 1.0 - - - +
473C THR* 2.6 31.7 + - - -
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Residues in contact with PHE 470 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
393C LEU* 4.0 10.5 - - + -
396C PHE* 3.7 30.5 - + + -
397C GLY* 3.9 15.9 - - - -
400C LEU* 4.5 11.7 - - + -
453C PHE* 4.8 1.1 - - + -
456C MET* 4.8 5.4 - - - -
466C ILE* 3.7 28.3 - - + -
467C TYR* 3.3 6.8 + - - +
468C ARG 3.3 0.2 - - - -
469C GLN* 1.3 73.2 - - - +
471C SER* 1.3 67.9 + - - +
473C THR* 3.1 5.9 + - - -
474C ILE* 2.9 37.2 + - + +
926C TYR* 4.1 27.4 - + - -
929C VAL* 3.9 42.4 - - + -
1003C VAL* 4.3 5.8 - - + -
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Residues in contact with SER 471 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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453C PHE* 2.9 35.9 + - - -
454C VAL* 4.5 1.6 - - - -
456C MET* 3.8 8.0 - - - -
457C ALA* 3.4 16.9 - - - +
467C TYR 3.0 17.1 + - - -
468C ARG* 3.9 9.2 - - - -
469C GLN 3.4 0.4 - - - -
470C PHE* 1.3 76.6 - - - +
472C ILE* 1.3 63.5 + - - +
475C VAL* 2.9 33.1 + - - +
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Residues in contact with ILE 472 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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382C VAL* 4.4 4.9 - - + -
383C LEU* 3.7 19.5 - - + -
386C PHE* 3.7 30.7 - - + -
388C PHE* 3.3 46.0 - - + -
394C THR* 5.1 0.2 - - + -
468C ARG* 3.1 13.7 + - + +
469C GLN 3.9 5.4 - - - +
471C SER* 1.3 77.9 + - - +
473C THR* 1.3 59.8 + - - +
475C VAL* 4.8 2.0 - - - -
476C SER* 2.3 39.6 + - - +
1105C HEX 4.4 12.3 - - + -
1108C D12 4.8 11.7 - - + -
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Residues in contact with THR 473 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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379C THR* 3.9 16.7 - - + +
383C LEU* 4.3 3.0 - - + +
394C THR* 3.6 37.9 - - - +
397C GLY* 3.9 7.2 - - - +
398C MET* 3.6 31.4 - - + +
401C ALA* 5.8 0.4 - - + -
469C GLN 2.6 22.6 + - - -
470C PHE 3.1 3.9 + - - -
472C ILE* 1.3 81.7 - - - +
474C ILE* 1.3 58.0 + - - +
476C SER* 3.7 2.4 + - - -
477C ALA* 3.1 30.6 + - + +
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Residues in contact with ILE 474 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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397C GLY* 3.9 21.1 - - - +
400C LEU* 4.1 26.7 - - + -
401C ALA* 4.9 5.6 - - + -
404C LEU* 4.8 11.7 - - + -
449C LEU* 4.2 7.0 - - + +
453C PHE* 3.4 53.8 - - + -
470C PHE* 2.9 25.3 + - + +
471C SER 4.5 0.9 - - - +
473C THR* 1.3 69.4 - - - +
475C VAL* 1.3 60.6 + - - +
477C ALA* 3.2 6.2 + - - +
478C MET* 2.8 39.5 + - + +
933C THR* 5.5 1.3 - - + -
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Residues in contact with VAL 475 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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450C SER* 3.7 33.1 + - - +
453C PHE* 3.7 25.6 - - + -
454C VAL* 4.4 12.6 - - + -
471C SER* 2.9 28.4 + - - +
472C ILE* 4.5 2.7 - - - +
474C ILE* 1.3 77.9 - - - +
476C SER* 1.3 59.2 + - - +
478C MET* 4.1 2.0 - - - +
479C ALA* 3.2 23.4 + - + +
1105C HEX 5.0 13.2 - - + +
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Residues in contact with SER 476 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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379C THR* 3.9 14.8 - - - +
382C VAL* 3.8 35.2 - - - +
472C ILE* 2.3 31.2 + - - +
473C THR 3.7 3.1 + - - -
475C VAL* 1.3 77.1 - - - +
477C ALA* 1.3 64.2 + - - +
479C ALA* 3.9 5.0 - - - +
480C LEU* 3.0 28.9 + - - +
1105C HEX 4.4 15.7 - - - +
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Residues in contact with ALA 477 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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375C VAL* 3.4 23.2 - - + +
376C LEU* 5.6 3.1 - - + -
379C THR* 3.5 13.1 + - + +
401C ALA* 4.0 24.5 - - + -
405C LEU* 4.7 2.9 - - + +
473C THR* 3.1 20.5 + - + +
474C ILE 3.7 3.8 - - - +
476C SER* 1.3 77.5 - - - +
478C MET* 1.4 54.2 + - - +
481C SER* 2.8 34.4 + - - -
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Residues in contact with MET 478 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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401C ALA* 5.6 1.8 - - - -
404C LEU* 3.4 48.2 - - + +
405C LEU* 4.5 1.6 - - - -
408C ASP* 5.6 1.1 - - - +
445C ILE* 5.1 4.5 - - + -
446C ALA* 4.1 19.0 - - - +
449C LEU* 3.8 36.3 - - + -
450C SER* 3.5 19.7 - - - +
474C ILE* 2.8 32.1 + - + +
475C VAL 4.1 0.2 - - - +
477C ALA* 1.4 73.7 - - - +
479C ALA* 1.3 65.8 + - - +
481C SER* 3.0 35.0 + - - +
482C VAL* 3.1 11.1 + - - +
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Residues in contact with ALA 479 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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446C ALA* 5.6 0.7 - - - -
450C SER* 4.7 2.6 + - - +
475C VAL* 3.2 19.7 + - + +
476C SER 3.9 3.6 - - - +
478C MET* 1.3 74.6 - - - +
480C LEU* 1.3 66.0 + - - +
482C VAL* 3.1 24.2 - - - +
483C LEU* 3.2 18.1 - - + +
1105C HEX 4.1 24.7 - - + -
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Residues in contact with LEU 480 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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19C ILE* 3.6 34.8 - - + -
374C VAL 4.5 3.8 - - - +
375C VAL* 3.6 30.1 - - + +
378C GLY* 3.7 22.9 - - - +
379C THR* 3.8 3.6 - - - +
382C VAL* 5.3 4.0 - - + -
476C SER* 3.0 19.4 + - - +
477C ALA 3.7 3.8 - - - +
479C ALA* 1.3 80.4 - - - +
481C SER* 1.3 58.7 + - - +
483C LEU* 3.3 11.6 + - + +
484C VAL* 2.9 40.5 + - + +
1105C HEX 5.0 12.6 - - + -
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Residues in contact with SER 481 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
371C ALA* 6.3 0.2 - - - -
375C VAL* 3.8 9.8 - - - +
404C LEU 4.5 0.2 + - - -
405C LEU* 3.5 34.5 + - - +
408C ASP* 4.2 12.4 + - - +
409C ALA* 5.4 0.3 + - - +
477C ALA 2.8 19.7 + - - -
478C MET* 3.0 25.5 + - - +
480C LEU* 1.3 76.6 - - - +
482C VAL* 1.3 64.5 + - - +
484C VAL* 3.5 3.5 + - - +
485C ALA* 3.2 22.5 + - - +
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Residues in contact with VAL 482 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
408C ASP* 3.7 22.4 - - - +
442C LEU* 3.9 18.8 - - + +
443C VAL* 4.3 10.1 - - + -
446C ALA* 3.9 11.9 - - + -
478C MET 3.1 8.4 + - - +
479C ALA* 3.1 18.4 - - - +
481C SER* 1.3 76.5 + - - +
483C LEU* 1.3 77.3 + - + +
485C ALA* 3.2 3.5 + - - +
486C LEU* 2.9 47.5 + - + +
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Residues in contact with LEU 483 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1C MET* 3.6 30.7 - - + -
479C ALA* 3.2 22.4 - - + +
480C LEU* 3.3 16.5 + - + +
482C VAL* 1.3 89.8 - - + +
484C VAL* 1.3 62.7 + - + +
486C LEU* 3.3 4.1 + - + +
487C ILE* 3.1 43.2 + - + +
1105C HEX 6.2 4.0 - - + -
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Residues in contact with VAL 484 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
19C ILE* 6.0 0.4 - - + -
371C ALA* 3.8 30.3 - - + -
374C VAL* 3.6 30.1 - - + -
375C VAL* 3.7 14.1 - - + -
409C ALA* 5.5 1.3 - - + -
480C LEU* 2.9 29.2 + - + +
481C SER* 3.6 6.3 - - - +
482C VAL 3.3 0.2 - - - -
483C LEU* 1.3 75.9 - - - +
485C ALA* 1.3 57.3 + - - +
487C ILE* 5.2 0.7 - - - -
488C LEU* 3.0 39.8 + - + +
489C THR* 3.0 19.0 + - - +
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Residues in contact with ALA 485 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
408C ASP* 3.7 36.1 - - + +
409C ALA* 4.0 3.1 - - - +
412C VAL* 4.0 14.1 - - + +
435C MET* 4.0 0.3 - - - +
442C LEU* 4.7 6.1 - - + -
481C SER 3.2 15.2 + - - +
482C VAL* 3.2 5.4 + - + +
484C VAL* 1.3 78.8 - - + +
486C LEU* 1.3 62.7 + - - +
489C THR* 3.9 11.0 - - - -
490C PRO* 2.8 21.9 - - - +
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Residues in contact with LEU 486 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1C MET* 4.3 24.0 - - + +
2C PRO* 3.4 37.3 - - + +
435C MET* 4.0 8.1 - - + -
439C GLN* 4.7 13.9 - - + -
442C LEU* 3.4 35.2 - - + -
443C VAL* 5.0 9.6 - - + -
482C VAL* 2.9 35.8 + - + +
483C LEU* 3.7 7.2 - - + +
484C VAL 3.2 0.2 - - - -
485C ALA* 1.3 80.9 - - + +
487C ILE* 1.3 60.9 + - - +
490C PRO* 3.6 6.0 - - - +
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Residues in contact with ILE 487 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1C MET* 3.8 25.4 - - + -
5C PHE* 3.3 67.6 - - + +
12C ALA* 3.6 14.6 - - + +
15C ILE* 4.0 26.5 - - + -
483C LEU* 3.1 29.5 + - + +
484C VAL* 5.2 0.7 - - - -
485C ALA 3.5 0.2 - - - -
486C LEU* 1.3 84.5 - - - +
488C LEU* 1.3 67.4 + - + +
490C PRO* 4.0 2.2 - - - +
491C ALA* 3.8 7.3 + - - +
1114C D10 5.1 3.8 - - + -
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Residues in contact with LEU 488 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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9C PRO 4.9 0.2 - - - +
12C ALA* 3.8 33.2 - - + +
13C TRP* 4.0 22.4 - - + +
16C ALA* 3.9 22.0 - - + -
370C ILE* 3.7 29.8 - - + -
374C VAL* 4.6 4.5 - - + -
484C VAL* 3.0 21.3 + - + +
487C ILE* 1.3 78.8 - - + +
489C THR* 1.3 69.3 + - - +
491C ALA* 3.0 7.0 + - + +
492C LEU* 2.8 41.8 + - + +
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Residues in contact with THR 489 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
367C ILE* 3.9 23.0 + - + +
371C ALA* 5.2 0.3 - - - +
409C ALA* 3.7 29.8 - - - +
412C VAL* 3.5 30.1 - - + -
413C VAL* 4.2 2.2 - - + -
484C VAL* 3.0 19.8 + - - +
485C ALA* 3.9 7.3 - - - -
488C LEU* 1.3 76.1 - - - +
490C PRO* 1.4 63.0 - - - +
492C LEU* 3.3 10.8 + - - +
493C CYS* 2.9 27.2 + - - -
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Residues in contact with PRO 490 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2C PRO* 4.3 5.4 - - + +
6C ILE* 3.7 23.1 - - + +
412C VAL* 4.7 0.2 - - + -
431C THR* 3.5 13.4 - - + +
435C MET* 3.6 25.6 - - + -
485C ALA 2.8 31.4 - - - +
486C LEU 3.6 20.0 - - - +
487C ILE 4.2 1.8 - - - +
488C LEU 3.6 2.5 - - - -
489C THR* 1.4 89.1 - - + +
491C ALA* 1.3 61.3 + - - +
493C CYS* 3.3 2.6 + - + -
494C ALA* 3.0 26.0 + - - +
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Residues in contact with ALA 491 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
5C PHE 3.1 26.9 + - - +
6C ILE* 4.2 8.2 - - - +
9C PRO* 3.7 23.1 - - + +
12C ALA* 4.2 6.1 - - + -
13C TRP* 6.4 0.2 - - + -
487C ILE 3.8 9.2 + - - +
488C LEU* 3.0 10.8 + - + +
490C PRO* 1.3 79.5 - - - +
492C LEU* 1.3 55.2 + - + +
494C ALA* 3.6 1.1 + - - -
495C THR* 2.7 39.3 + - - +
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Residues in contact with LEU 492 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
9C PRO* 6.6 0.2 - - + -
13C TRP* 3.4 38.1 - - + +
367C ILE* 4.0 32.1 - - + +
370C ILE* 4.0 19.1 - - + -
488C LEU* 2.8 45.4 + - + +
489C THR* 3.7 7.0 - - - +
491C ALA* 1.3 75.0 - - + +
493C CYS* 1.3 56.9 + - - +
495C THR* 3.7 5.6 - - - +
496C MET* 2.7 56.4 + - + +
1106C D12 6.2 0.4 - - + -
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Residues in contact with CYS 493 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
367C ILE* 3.9 8.7 - - - +
412C VAL* 3.7 25.6 - - - -
413C VAL* 3.8 29.4 - - - -
416C VAL* 4.0 9.6 - - - -
427C PRO* 3.9 5.4 - - - +
431C THR* 3.6 16.6 - - + +
489C THR 2.9 25.2 + - - +
490C PRO 3.6 5.6 - - - +
492C LEU* 1.3 71.8 - - - +
494C ALA* 1.3 63.5 + - - +
497C LEU* 3.2 36.5 + - + +
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Residues in contact with ALA 494 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
6C ILE* 3.8 26.7 - - + +
427C PRO* 4.1 12.0 - - - +
428C LYS* 4.1 30.0 + - + +
431C THR* 3.8 12.6 - - - +
490C PRO 3.0 14.6 + - - +
491C ALA 3.9 4.5 - - - +
492C LEU 3.2 0.2 - - - -
493C CYS* 1.3 80.6 - - - +
495C THR* 1.3 64.7 + - + +
497C LEU 5.2 0.2 - - - +
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Residues in contact with THR 495 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
6C ILE 4.5 7.2 - - - +
9C PRO* 4.2 28.0 - - + +
13C TRP* 5.9 0.2 + - - -
363C ARG* 5.3 2.1 + - - -
428C LYS* 4.8 9.4 - - - +
491C ALA 2.7 24.0 + - - +
492C LEU* 3.6 8.8 + - - +
494C ALA* 1.3 88.4 - - + +
496C MET* 1.3 62.1 + - - +
497C LEU 3.9 2.0 - - - -
1106C D12 5.2 9.0 - - - +
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Residues in contact with MET 496 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
13C TRP* 5.7 2.0 - - + -
363C ARG* 3.4 61.3 + - + +
366C LEU* 4.2 12.3 - - + -
367C ILE* 3.5 28.9 - - + -
370C ILE* 4.1 24.5 - - + -
492C LEU* 2.7 43.9 + - + +
495C THR* 1.3 76.3 - - - +
497C LEU* 1.3 65.4 + - - +
1106C D12 6.4 1.8 - - - -
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Residues in contact with LEU 497 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
361C ASN* 5.3 1.3 - - - +
363C ARG* 5.3 2.4 + - + -
364C ALA* 3.6 29.8 - - + +
367C ILE* 4.0 11.4 - - + -
413C VAL* 4.3 6.7 - - + -
416C VAL* 3.9 27.8 - - + -
417C GLU* 3.5 36.1 - - + +
420C MET* 4.3 3.4 - - + -
427C PRO* 3.4 22.4 - - + +
492C LEU 3.7 1.8 + - - -
493C CYS* 3.2 32.4 + - + +
494C ALA 5.2 0.3 - - - +
495C THR 5.0 1.6 - - - -
496C MET* 1.3 79.6 + - - +
498C LYS* 1.5 65.1 + - - +
499C PRO* 4.4 0.5 - - - +
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il