Contacts of the helix formed by residues 996 - 1033 (chain A) in PDB entry 5NC5
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with GLY 996 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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332A PHE* 3.9 9.5 - - - -
336A SER* 4.3 15.0 - - - -
567A GLU* 3.3 22.6 + - - -
568A ASP 5.2 1.2 + - - -
994A GLY 3.1 0.4 + - - -
995A ALA* 1.3 73.1 - - - +
997A SER* 1.3 59.8 + - - +
998A GLY 3.1 3.5 + - - -
999A ALA* 3.2 7.3 + - - +
1000A GLN* 2.9 31.5 + - - +
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Residues in contact with SER 997 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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567A GLU* 4.0 0.2 + - - -
992A SER* 3.4 15.7 + - - -
993A THR* 3.4 28.1 - - - -
994A GLY 2.8 24.4 + - - -
995A ALA 3.2 0.2 - - - -
996A GLY* 1.3 70.1 - - - +
998A GLY* 1.3 60.0 + - - +
1000A GLN* 3.8 9.2 - - - -
1001A ASN* 2.5 43.5 + - - -
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Residues in contact with GLY 998 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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565A PRO* 4.0 14.3 - - - +
566A ASP 5.5 2.0 - - - -
567A GLU* 3.5 14.2 + - - -
996A GLY 3.1 1.8 - - - -
997A SER* 1.3 82.6 + - - +
999A ALA* 1.3 61.2 + - - +
1001A ASN* 4.1 4.7 - - - +
1002A ALA* 3.1 24.3 + - - +
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Residues in contact with ALA 999 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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392A THR* 4.8 4.0 - - + -
396A PHE* 3.7 25.6 - - + -
565A PRO* 4.8 0.9 - - - -
567A GLU* 2.7 20.7 + - - +
926A TYR* 3.9 27.1 - - + +
996A GLY* 3.6 6.5 - - - +
998A GLY* 1.3 70.6 - - - +
1000A GLN* 1.3 66.3 + - - +
1002A ALA* 3.3 2.4 + - - +
1003A VAL* 3.0 28.6 + - - +
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Residues in contact with GLN1000 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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336A SER 4.6 4.2 + - - -
339A GLU* 3.5 35.2 + - - +
340A VAL* 4.4 4.2 - - - +
343A THR* 4.4 8.1 - - - +
396A PHE* 4.2 16.6 - - + -
988A PRO 4.4 0.2 - - - +
989A LEU* 3.6 43.1 - - + +
992A SER* 2.8 26.8 + - - -
995A ALA 3.7 13.5 + - - -
996A GLY* 2.9 18.8 + - - +
997A SER* 3.8 5.8 - - - +
999A ALA* 1.3 74.3 - - - +
1001A ASN* 1.3 66.6 + - - +
1003A VAL* 3.3 1.4 + - - +
1004A GLY 2.9 20.6 + - - -
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Residues in contact with ASN1001 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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919A ARG* 4.4 24.2 - - - +
921A LEU* 4.2 7.9 - - + -
989A LEU 3.0 17.4 - - - +
990A VAL* 3.5 11.3 + - - +
992A SER* 2.9 27.6 + - - +
993A THR* 5.4 2.4 - - - +
997A SER* 2.5 32.3 + - - +
998A GLY* 4.1 4.8 - - - +
1000A GLN* 1.3 71.1 - - - +
1002A ALA* 1.3 61.8 + - - +
1005A THR* 2.8 41.0 + - + +
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Residues in contact with ALA1002 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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565A PRO* 4.4 3.6 - - + -
921A LEU* 4.0 17.3 - - + +
924A ASP* 4.0 19.7 - - - +
926A TYR* 4.0 28.3 - - + +
927A PHE* 4.4 7.6 + - - +
998A GLY 3.1 19.2 + - - +
999A ALA 3.6 4.5 - - - +
1000A GLN 3.2 0.2 - - - -
1001A ASN* 1.3 79.1 - - - +
1003A VAL* 1.3 62.8 + - - +
1006A GLY* 4.1 9.4 + - - -
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Residues in contact with VAL1003 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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396A PHE* 3.9 24.0 - - + -
399A VAL* 4.7 4.3 - - + -
400A LEU* 3.8 32.1 - - + -
926A TYR* 3.7 37.5 - - + +
929A VAL* 6.0 0.4 - - + -
930A GLY* 5.4 1.0 - - - -
986A VAL* 5.8 0.9 - - + -
989A LEU* 4.2 18.8 - - + -
999A ALA 3.0 20.4 + - - +
1000A GLN* 3.8 4.5 - - - +
1002A ALA* 1.3 78.9 - - - +
1004A GLY* 1.3 66.1 + - - +
1005A THR 3.4 0.3 + - - -
1006A GLY* 4.2 0.5 - - - -
1007A VAL* 3.4 22.1 + - + +
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Residues in contact with GLY1004 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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986A VAL* 4.0 10.5 - - - +
989A LEU* 3.9 13.0 - - - +
990A VAL* 3.4 15.9 - - - +
1000A GLN 2.9 17.1 + - - -
1001A ASN 3.9 0.2 - - - -
1003A VAL* 1.3 80.0 - - - +
1005A THR* 1.3 56.3 + - - +
1007A VAL* 3.3 3.8 + - - +
1008A MET* 2.9 30.0 + - - +
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Residues in contact with THR1005 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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915A ALA* 3.6 30.7 + - - +
916A ALA* 4.4 2.1 + - - +
919A ARG* 4.3 14.6 - - - +
921A LEU* 3.5 24.1 - - + +
990A VAL* 3.6 28.9 - - + +
1001A ASN* 2.8 30.8 + - - +
1004A GLY* 1.3 72.1 - - - +
1006A GLY* 1.3 67.6 + - - +
1008A MET* 3.9 2.1 - - - +
1009A GLY 3.0 20.1 + - - -
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Residues in contact with GLY1006 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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912A ALA* 3.5 21.1 - - - +
916A ALA* 5.5 1.1 - - - +
921A LEU* 5.7 0.2 - - - +
927A PHE* 4.4 25.8 - - - -
930A GLY* 5.7 3.6 - - - -
931A LEU* 6.0 0.2 - - - -
934A THR* 4.6 1.5 + - - -
1002A ALA 4.1 6.7 + - - -
1003A VAL 3.7 4.3 + - - -
1004A GLY 3.4 0.2 - - - -
1005A THR* 1.3 81.4 + - - +
1007A VAL* 1.3 55.3 + - - +
1010A GLY* 2.9 25.5 + - - -
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Residues in contact with VAL1007 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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400A LEU* 3.8 26.9 - - + -
930A GLY* 4.1 20.6 + - - +
933A THR* 5.4 0.9 - - - -
934A THR* 4.2 9.1 + - - +
982A PHE* 3.7 31.9 - - + +
983A ILE* 6.2 0.4 - - - -
986A VAL* 3.8 21.8 - - + -
1003A VAL* 3.4 16.7 + - + +
1004A GLY 3.3 7.8 + - - +
1005A THR 3.3 0.4 - - - -
1006A GLY* 1.3 73.9 - - - +
1008A MET* 1.3 58.3 + - - +
1010A GLY* 3.3 0.5 + - - -
1011A MET* 2.8 33.9 + - + +
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Residues in contact with MET1008 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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983A ILE* 4.2 29.6 - - + +
986A VAL* 4.2 12.1 - - + -
987A MET* 4.9 16.6 - - - +
990A VAL* 4.3 19.1 - - + -
1004A GLY 2.9 16.7 + - - +
1005A THR* 3.9 4.0 - - - +
1006A GLY 3.3 0.2 - - - -
1007A VAL* 1.3 80.3 - - - +
1009A GLY* 1.3 65.0 + - - +
1011A MET* 3.5 3.9 + - - +
1012A VAL* 3.0 39.4 + - + +
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Residues in contact with GLY1009 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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911A GLY* 3.5 24.0 - - - -
915A ALA* 3.8 12.3 - - - +
1005A THR 3.0 10.7 + - - -
1008A MET* 1.3 78.4 - - - +
1010A GLY* 1.3 65.3 + - - +
1012A VAL* 3.2 15.5 + - - +
1013A THR* 3.2 15.2 + - - +
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Residues in contact with GLY1010 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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908A GLY* 3.4 23.0 - - - -
912A ALA* 3.5 6.2 - - - +
934A THR* 3.6 16.2 - - - -
1006A GLY 2.9 18.2 + - - -
1007A VAL 3.7 0.7 - - - -
1009A GLY* 1.3 75.3 - - - +
1011A MET* 1.3 56.3 + - - +
1013A THR* 3.4 1.9 + - - -
1014A ALA* 3.0 31.4 + - - +
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Residues in contact with MET1011 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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934A THR* 4.3 18.2 - - + +
937A LEU* 3.9 37.9 - - + -
938A SER* 5.5 2.0 - - - +
941A ASN* 5.4 6.7 - - - +
978A THR* 5.3 2.0 - - + -
979A SER* 3.2 37.4 + - - +
982A PHE* 3.7 24.7 - - + -
983A ILE* 3.8 23.1 - - + +
1007A VAL* 2.8 23.9 + - + +
1010A GLY* 1.3 70.3 - - - +
1012A VAL* 1.3 61.5 + - - +
1014A ALA* 4.0 6.7 - - + -
1015A THR* 2.5 36.3 + - - +
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Residues in contact with VAL1012 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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983A ILE* 3.6 21.5 - - + -
1008A MET* 3.0 33.6 + - + +
1009A GLY* 3.2 7.4 + - - +
1011A MET* 1.3 77.4 - - - +
1013A THR* 1.3 70.3 + - + +
1015A THR* 3.8 1.9 - - - -
1016A VAL* 3.2 29.1 + - + +
22G ILE* 5.5 8.5 - - + -
25G LEU* 4.7 20.0 - - + -
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Residues in contact with THR1013 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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907A LEU 2.7 25.4 + - - -
910A ILE* 4.5 2.9 - - + -
911A GLY* 3.3 35.7 + - - +
914A LEU* 4.9 7.6 - - + -
1009A GLY 3.2 2.8 + - - +
1010A GLY 3.4 4.9 + - - -
1012A VAL* 1.3 79.3 - - + +
1014A ALA* 1.3 59.7 + - - +
1016A VAL* 3.9 7.4 - - + -
1017A LEU* 2.7 51.6 + - + +
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Residues in contact with ALA1014 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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907A LEU* 3.8 13.0 - - + -
908A GLY* 3.9 12.1 - - - +
934A THR* 4.6 4.5 - - + -
938A SER* 3.8 26.7 - - - -
1010A GLY 3.0 17.1 + - - +
1011A MET* 4.2 9.0 - - + +
1013A THR* 1.3 81.5 + - - +
1015A THR* 1.3 61.0 + - - +
1018A ALA* 2.8 32.8 + - - +
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Residues in contact with THR1015 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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941A ASN* 6.3 0.9 - - - +
975A ILE* 3.9 22.2 - - + -
976A LEU* 3.9 17.7 - - + -
979A SER* 2.3 43.3 + - - +
983A ILE* 5.1 0.6 - - - +
1011A MET* 2.5 23.8 + - - +
1012A VAL* 3.8 3.1 - - - -
1013A THR 3.2 0.6 - - - -
1014A ALA* 1.3 81.5 - - - +
1016A VAL* 1.3 69.2 + - + +
1018A ALA* 5.1 0.2 - - - -
1019A ILE* 3.1 28.8 + - + +
22G ILE* 5.8 6.3 - - + -
26G ILE* 5.8 0.2 - - + -
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Residues in contact with VAL1016 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1012A VAL* 3.2 22.7 - - + +
1013A THR* 3.5 8.5 - - + +
1015A THR* 1.3 82.7 - - + +
1017A LEU* 1.3 77.7 + - + +
1019A ILE* 3.2 5.4 - - - +
1020A PHE* 3.0 29.1 - - - -
22G ILE* 4.3 11.2 - - + +
25G LEU* 4.0 25.4 - - + -
26G ILE* 3.5 30.3 - - + -
29G LEU* 4.1 12.7 - - + +
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Residues in contact with LEU1017 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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548A ILE* 4.3 20.9 - - + -
907A LEU* 3.8 27.1 - - + +
910A ILE* 4.5 9.0 - - + -
1013A THR* 2.7 39.5 + - + +
1016A VAL* 1.3 92.0 - - + +
1018A ALA* 1.3 61.8 + - - +
1020A PHE* 3.4 3.5 + - - +
1021A PHE* 3.1 40.5 + - + +
29G LEU* 4.0 16.2 - - + -
33G PHE* 6.4 0.4 - - + -
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Residues in contact with ALA1018 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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904A VAL* 4.5 11.7 - - + -
907A LEU* 4.1 11.4 - - + +
938A SER* 5.2 9.2 - - - +
941A ASN* 6.3 2.9 - - + -
945A ILE* 6.0 0.9 - - + -
1014A ALA* 2.8 24.3 + - - +
1015A THR 4.3 0.4 - - - +
1017A LEU* 1.3 73.0 - - - +
1019A ILE* 1.3 61.9 + - + +
1020A PHE 2.9 5.3 + - - -
1021A PHE 4.4 0.4 - - - +
1022A VAL* 2.9 49.4 + - + +
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Residues in contact with ILE1019 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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527A TYR* 2.4 50.1 + - + +
531A VAL* 4.3 0.2 - - - +
945A ILE* 5.6 4.3 - - - -
968A VAL* 3.9 2.0 - - - +
972A LEU* 4.9 12.6 - - + -
975A ILE* 4.1 33.9 - - + -
976A LEU* 5.3 2.7 - - + -
1015A THR* 3.1 14.6 - - + +
1016A VAL 3.2 16.6 - - - +
1018A ALA* 1.3 75.8 - - + +
1020A PHE* 1.3 65.2 + - + +
1022A VAL* 5.5 0.4 - - - -
1023A PRO* 3.3 14.0 - - - +
26G ILE* 3.4 38.8 - - + -
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Residues in contact with PHE1020 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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526A HIS* 6.5 0.2 - + - -
527A TYR* 3.6 33.2 - + + -
530A SER* 4.3 16.6 - - - -
531A VAL* 4.1 11.7 - - + +
534A ILE* 4.1 13.2 - - + +
1016A VAL 3.0 26.0 - - - -
1017A LEU* 3.4 5.7 + - - +
1018A ALA 3.0 0.6 - - - -
1019A ILE* 1.3 87.9 - - + +
1021A PHE* 1.3 64.8 + - + +
1023A PRO* 3.0 19.3 - - - +
1024A VAL* 3.6 14.2 - - - +
26G ILE* 3.6 24.9 - - + -
29G LEU* 3.7 20.4 - - + -
30G GLY* 4.0 6.1 - - - -
33G PHE* 3.5 37.2 - + + -
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Residues in contact with PHE1021 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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541A TYR* 4.0 15.7 - + + -
544A LEU* 3.8 19.1 - - + -
545A TYR* 3.8 35.7 - + + -
548A ILE* 3.8 22.7 - - + -
907A LEU* 3.8 12.6 - - + -
1017A LEU* 3.1 28.7 + - + +
1020A PHE* 1.3 82.3 - - + +
1022A VAL* 1.3 66.1 + - - +
1023A PRO* 3.2 0.2 - - - -
1024A VAL* 2.8 21.3 + - + +
1025A PHE* 2.9 43.9 + + + -
33G PHE* 4.3 22.0 - + - -
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Residues in contact with VAL1022 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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900A SER 4.4 6.3 - - - +
904A VAL* 3.3 32.5 - - + -
942A ALA* 4.1 19.7 - - + -
945A ILE* 4.1 29.6 - - + -
946A VAL* 4.2 17.0 - - + -
1018A ALA* 2.9 30.1 + - + +
1021A PHE* 1.3 69.1 - - - +
1023A PRO* 1.3 70.3 - - + +
1024A VAL 3.1 0.3 + - - -
1025A PHE* 3.1 10.3 + - - +
1026A PHE* 2.9 22.1 + - + +
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Residues in contact with PRO1023 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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531A VAL* 3.9 22.0 - - + -
535A LEU* 3.6 5.7 - - + +
945A ILE* 5.8 1.8 - - + -
964A THR* 3.6 25.5 - - + +
968A VAL* 3.7 19.3 - - + -
1018A ALA 3.8 0.4 - - - +
1019A ILE 3.3 20.6 - - - +
1020A PHE 3.0 20.9 - - - +
1022A VAL* 1.3 95.5 - - + +
1024A VAL* 1.3 61.0 + - + +
1026A PHE* 3.5 3.8 + - + +
1027A VAL* 3.3 27.9 + - - +
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Residues in contact with VAL1024 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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531A VAL* 6.5 0.2 - - + -
534A ILE* 3.7 27.1 - - + +
535A LEU* 4.1 12.6 - - + -
538A THR* 4.5 11.7 - - - +
541A TYR* 4.9 11.4 - - + -
542A LEU* 4.3 15.9 - - + +
1020A PHE 3.6 16.6 - - - +
1021A PHE* 2.8 14.1 + - + +
1023A PRO* 1.3 75.3 - - + +
1025A PHE* 1.3 76.8 + - + +
1026A PHE 3.0 0.7 + - - -
1027A VAL* 3.2 4.7 - - - +
1028A VAL* 3.0 40.2 + - + +
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Residues in contact with PHE1025 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
542A LEU* 6.4 2.2 - - + -
545A TYR* 3.5 44.0 - + + -
900A SER* 3.5 30.7 - - - +
903A LEU* 3.8 45.1 - - + -
904A VAL* 4.2 9.2 - - + -
907A LEU* 4.7 1.8 - - + -
1021A PHE* 2.9 44.8 + + + -
1022A VAL* 3.6 13.0 - - - +
1024A VAL* 1.3 81.1 - - + +
1026A PHE* 1.3 60.9 + - - +
1028A VAL* 4.0 3.3 - - - +
1029A VAL* 2.9 33.1 + - - +
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Residues in contact with PHE1026 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
897A ILE* 4.3 10.5 - - + -
900A SER* 3.7 11.8 - - - -
945A ILE* 6.5 0.2 - - + -
946A VAL* 3.4 44.2 - - + -
949A ALA* 3.5 28.3 - - + -
950A LYS* 4.1 9.0 - - + -
953A MET* 4.1 11.7 - - - -
960A LEU* 3.9 13.0 - - + -
964A THR* 3.5 24.0 - - + -
1022A VAL 2.9 16.9 + - - +
1023A PRO* 3.8 6.3 - - + +
1024A VAL 3.0 1.0 + - - -
1025A PHE* 1.3 77.5 - - - +
1027A VAL* 1.3 56.2 + - - +
1029A VAL* 4.0 1.2 - - - +
1030A ARG* 2.9 59.0 + - - +
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Residues in contact with VAL1027 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
535A LEU* 3.9 27.6 - - + +
538A THR* 4.9 8.1 - - - -
960A LEU* 3.7 27.1 - - + -
961A ILE* 4.5 5.8 - - + -
964A THR* 3.6 22.7 - - - +
1023A PRO 3.3 14.1 + - - +
1024A VAL* 3.2 12.1 + - - +
1026A PHE* 1.3 74.1 - - - +
1028A VAL* 1.3 75.8 + - + +
1030A ARG* 3.1 0.8 + - - -
1031A ARG* 2.8 43.6 + - - +
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Residues in contact with VAL1028 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
538A THR* 3.7 29.8 - - - -
542A LEU* 4.2 21.1 - - + -
1024A VAL* 3.0 26.9 + - + +
1025A PHE* 4.0 4.7 - - - +
1027A VAL* 1.3 84.0 - - + +
1029A VAL* 1.3 64.2 + - + +
1031A ARG* 3.8 5.1 - - - +
1032A ARG* 2.9 34.2 + - + +
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Residues in contact with VAL1029 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
896A SER* 3.3 33.5 + - - +
897A ILE* 4.4 5.6 - - + +
899A PHE* 4.5 10.5 - - + +
900A SER* 4.1 20.0 - - - +
903A LEU* 5.2 5.8 - - + -
1025A PHE* 2.9 27.5 + - + +
1026A PHE* 4.0 1.3 - - + +
1028A VAL* 1.3 80.7 - - + +
1030A ARG* 1.3 63.9 + - - +
1032A ARG* 4.4 4.5 - - - -
1033A PHE* 3.1 40.7 + - + +
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Residues in contact with ARG1030 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
896A SER* 6.2 0.2 - - - -
897A ILE* 4.3 28.8 - - - +
950A LYS* 5.5 8.7 - - - +
953A MET* 3.2 25.4 - - + +
954A ASP* 5.3 5.3 + - - -
960A LEU* 3.5 27.8 - - + -
1026A PHE* 2.9 41.2 + - + +
1027A VAL 3.4 5.2 - - - +
1029A VAL* 1.3 79.7 - - - +
1031A ARG* 1.3 63.5 + - - +
1033A PHE* 3.6 12.5 + - - -
1034A SER* 3.5 19.1 + - - +
1038A GLU* 3.7 20.3 + - - +
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Residues in contact with ARG1031 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
535A LEU 4.5 12.9 + - - -
960A LEU* 3.7 18.8 - - + +
961A ILE* 3.3 33.8 - - - +
1027A VAL* 2.8 33.7 + - - +
1028A VAL* 3.8 4.2 - - - +
1030A ARG* 1.3 68.4 - - - +
1032A ARG* 1.3 58.8 + - - +
1033A PHE 2.8 11.1 + - - -
1034A SER* 3.0 25.3 + - - -
1038A GLU* 4.5 4.5 - - - +
1039A ASP* 4.2 23.4 + - - +
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Residues in contact with ARG1032 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1028A VAL* 2.9 24.5 + - + +
1029A VAL* 4.4 1.3 - - - -
1031A ARG* 1.3 75.6 - - - +
1033A PHE* 1.3 85.5 + - + +
1034A SER 3.7 0.4 - - - -
----------------------------------------------------------
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Residues in contact with PHE1033 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
896A SER* 3.4 35.6 + - - +
899A PHE* 5.8 7.0 - + - -
1029A VAL* 3.1 29.6 + - + +
1030A ARG* 3.6 13.8 + - - +
1031A ARG 3.0 0.8 - - - -
1032A ARG* 1.3 105.7 - - + +
1034A SER* 1.3 61.4 + - - +
1105A D10 4.2 32.8 - - + -
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il