Contacts of the helix formed by residues 996 - 1033 (chain B) in PDB entry 5NC5
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with GLY 996 (chain B).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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332B PHE* 3.6 18.1 - - - -
336B SER* 5.9 1.1 - - - -
396B PHE* 4.8 1.1 - - - -
567B GLU* 2.9 23.3 + - - +
568B ASP 5.1 0.8 + - - +
994B GLY 3.3 0.6 + - - -
995B ALA* 1.3 73.1 - - - +
997B SER* 1.3 63.9 + - - +
998B GLY 3.1 3.4 + - - -
999B ALA* 3.2 7.2 + - - +
1000B GLN* 3.1 27.4 + - - +
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Residues in contact with SER 997 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
567B GLU* 3.4 0.2 + - - -
992B SER* 3.6 13.7 + - - -
993B THR* 3.5 29.7 - - - +
994B GLY 3.0 22.8 + - - -
995B ALA 3.1 1.4 + - - -
996B GLY* 1.3 75.4 - - - +
998B GLY* 1.3 62.1 + - - +
1000B GLN* 3.7 10.5 - - - -
1001B ASN* 2.7 41.1 + - - -
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Residues in contact with GLY 998 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
565B PRO* 3.7 19.0 - - - +
566B ASP 4.2 7.0 - - - -
567B GLU* 3.2 15.2 + - - -
996B GLY 3.1 1.4 - - - -
997B SER* 1.3 83.1 + - - +
999B ALA* 1.3 56.0 + - - +
1001B ASN* 3.7 6.0 - - - +
1002B ALA* 3.0 27.2 + - - +
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Residues in contact with ALA 999 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
392B THR* 5.5 0.9 - - + -
396B PHE* 3.2 30.1 - - + -
565B PRO* 3.8 9.2 - - - +
567B GLU* 3.0 17.1 + - - +
926B TYR* 3.6 22.4 - - + +
996B GLY* 3.2 4.0 + - - +
998B GLY* 1.3 72.5 - - - +
1000B GLN* 1.3 66.8 + - - +
1002B ALA* 2.9 11.6 + - - +
1003B VAL* 3.0 20.7 + - - +
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Residues in contact with GLN1000 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
339B GLU* 2.8 48.5 + - - +
396B PHE* 3.9 21.7 - - + -
989B LEU* 3.5 46.8 - - + +
992B SER* 2.8 27.9 + - - +
993B THR 5.0 0.2 - - - +
995B ALA 4.2 5.2 - - - +
996B GLY* 3.1 14.4 + - - +
997B SER* 3.7 11.8 + - - +
999B ALA* 1.3 74.4 - - - +
1001B ASN* 1.3 59.3 + - - +
1003B VAL* 3.9 2.0 - - - +
1004B GLY 2.9 25.1 + - - -
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Residues in contact with ASN1001 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
919B ARG* 3.1 37.2 - - - +
921B LEU* 4.4 7.4 - - + -
989B LEU 2.8 21.9 - - - +
990B VAL 3.4 3.0 - - - +
992B SER* 3.2 21.8 + - - +
993B THR* 5.8 1.2 - - - +
997B SER* 2.7 33.1 + - - +
998B GLY* 3.7 5.7 - - - +
1000B GLN* 1.3 71.2 - - - +
1002B ALA* 1.3 63.8 + - - +
1005B THR* 2.8 34.7 + - + +
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Residues in contact with ALA1002 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
565B PRO* 4.4 1.8 - - + -
921B LEU* 4.6 12.2 - - + +
924B ASP* 3.7 22.2 - - - +
926B TYR* 3.6 24.2 - - + -
927B PHE* 4.0 19.5 - - + +
998B GLY 3.0 13.1 + - - +
999B ALA* 2.9 9.4 + - - +
1001B ASN* 1.3 78.7 - - - +
1003B VAL* 1.3 60.7 + - - +
1005B THR* 5.1 0.2 + - - -
1006B GLY* 4.1 10.0 + - - -
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Residues in contact with VAL1003 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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396B PHE* 4.1 15.3 - - + -
399B VAL* 4.2 8.7 - - + -
400B LEU* 3.7 28.3 - - + -
926B TYR* 3.9 28.9 - - + -
930B GLY* 5.3 0.8 - - - -
986B VAL* 5.3 2.0 - - + -
989B LEU* 3.4 28.5 - - + -
999B ALA 3.0 19.8 + - - +
1000B GLN 3.9 1.6 - - - +
1002B ALA* 1.3 75.5 - - - +
1004B GLY* 1.4 71.8 + - - +
1007B VAL* 3.2 28.1 + - - +
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Residues in contact with GLY1004 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
986B VAL* 3.9 10.3 - - - +
989B LEU* 4.1 8.3 - - - -
990B VAL* 3.3 18.4 - - - -
1000B GLN 2.9 17.2 + - - -
1003B VAL* 1.4 79.9 - - - +
1005B THR* 1.3 60.7 + - - +
1007B VAL* 3.1 2.9 + - - +
1008B MET* 2.8 30.7 + - - +
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Residues in contact with THR1005 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
915B ALA* 3.6 27.1 + - - +
916B ALA* 4.2 3.5 + - - +
919B ARG* 3.7 22.0 - - - +
921B LEU* 3.6 26.2 - - + +
990B VAL* 3.6 23.9 - - + +
1001B ASN* 2.8 23.6 + - - +
1002B ALA 5.1 0.2 + - - -
1004B GLY* 1.3 74.1 - - - +
1006B GLY* 1.3 68.0 + - - +
1008B MET* 3.8 1.9 - - - +
1009B GLY 2.9 21.1 + - - -
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Residues in contact with GLY1006 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
912B ALA* 3.2 28.3 - - - +
916B ALA* 5.5 0.2 - - - -
927B PHE* 4.4 20.6 - - - -
930B GLY* 5.7 4.3 - - - -
934B THR* 4.6 1.0 + - - -
1002B ALA 4.1 7.3 + - - -
1003B VAL 4.1 2.0 + - - -
1004B GLY 3.4 0.4 - - - -
1005B THR* 1.3 83.2 + - - +
1007B VAL* 1.3 62.5 + - - +
1010B GLY* 3.0 18.9 + - - -
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Residues in contact with VAL1007 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
400B LEU* 4.1 10.5 - - + -
930B GLY* 3.9 28.0 - - - +
933B THR* 4.0 11.7 - - - +
934B THR* 4.0 7.9 + - - +
982B PHE* 3.3 37.7 - - + -
983B ILE* 6.5 0.2 - - - -
986B VAL* 4.2 15.7 - - + -
1003B VAL 3.2 19.9 + - - +
1004B GLY 3.1 3.0 + - - +
1006B GLY* 1.3 77.1 - - - +
1008B MET* 1.3 58.5 + - - +
1010B GLY 3.7 0.2 - - - -
1011B MET* 2.7 32.7 + - + +
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Residues in contact with MET1008 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
983B ILE* 3.3 45.0 - - + +
986B VAL* 4.0 6.5 - - + -
987B MET* 3.5 43.5 - - - +
990B VAL* 3.9 19.7 - - + -
1004B GLY 2.8 19.4 + - - +
1005B THR 3.9 2.5 - - - +
1007B VAL* 1.3 72.1 - - - +
1009B GLY* 1.3 66.1 + - - +
1011B MET* 3.3 5.6 + - - +
1012B VAL* 3.0 28.6 + - + +
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Residues in contact with GLY1009 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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911B GLY* 3.4 20.4 - - - -
915B ALA* 3.9 8.9 - - - +
1005B THR 2.9 14.8 + - - -
1008B MET* 1.3 77.3 - - - +
1010B GLY* 1.3 63.8 + - - +
1012B VAL* 3.2 15.5 + - - +
1013B THR* 3.2 18.9 + - - +
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Residues in contact with GLY1010 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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908B GLY* 3.0 24.8 - - - -
911B GLY 4.1 0.2 - - - -
912B ALA* 3.5 6.6 - - - +
934B THR* 3.9 12.1 - - - -
1006B GLY 3.0 16.0 + - - -
1007B VAL 3.8 0.4 - - - -
1009B GLY* 1.3 77.1 - - - +
1011B MET* 1.3 57.1 + - - +
1013B THR* 3.7 1.0 + - - -
1014B ALA* 2.9 33.8 + - - +
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Residues in contact with MET1011 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
934B THR* 4.5 21.5 - - - +
937B LEU* 3.9 29.6 - - + -
938B SER* 5.9 0.9 - - - +
941B ASN* 5.7 5.4 - - - +
978B THR* 5.6 0.4 - - + -
979B SER* 3.6 30.3 - - - +
982B PHE* 3.6 33.9 - - + -
983B ILE* 3.8 22.1 - - + +
1007B VAL* 2.7 27.4 + - + +
1008B MET* 3.8 1.3 - - - +
1009B GLY 3.3 0.2 - - - -
1010B GLY* 1.3 71.4 - - - +
1012B VAL* 1.3 63.6 + - - +
1014B ALA* 4.6 5.2 - - + -
1015B THR* 2.5 35.6 + - - +
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Residues in contact with VAL1012 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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983B ILE* 4.2 18.2 - - + -
1008B MET* 3.0 21.2 + - + +
1009B GLY* 3.2 9.2 + - - +
1011B MET* 1.3 77.5 - - - +
1013B THR* 1.3 73.9 + - + +
1015B THR* 3.6 1.4 - - - -
1016B VAL* 3.0 41.0 + - + +
22H ILE* 5.4 9.2 - - + -
25H LEU* 5.5 13.2 - - + -
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Residues in contact with THR1013 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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907B LEU 2.5 27.0 + - - -
908B GLY 3.8 0.2 + - - -
910B ILE* 4.4 6.5 - - + -
911B GLY* 3.2 36.5 + - - +
914B LEU* 5.0 6.3 - - + -
1009B GLY* 3.2 5.4 + - - +
1010B GLY 3.7 4.2 + - - -
1012B VAL* 1.3 83.0 - - + +
1014B ALA* 1.3 67.6 + - - +
1016B VAL* 4.7 2.2 - - - -
1017B LEU* 2.9 40.7 + - - +
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Residues in contact with ALA1014 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
907B LEU* 4.0 11.0 - - - -
908B GLY* 3.6 15.5 - - - +
934B THR* 4.5 4.9 - - + -
938B SER* 3.7 25.3 - - - -
941B ASN* 5.5 2.3 + - - +
1010B GLY 2.9 21.8 + - - +
1011B MET* 4.4 7.2 - - + +
1013B THR* 1.3 79.3 + - - +
1015B THR* 1.3 59.0 + - - +
1018B ALA* 2.8 32.7 + - - +
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Residues in contact with THR1015 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
941B ASN* 5.5 4.9 + - - +
975B ILE* 4.4 17.7 - - + -
976B LEU* 4.5 13.5 - - + -
979B SER* 2.6 37.7 + - - +
983B ILE* 5.6 1.3 - - + -
1011B MET* 2.5 30.3 + - - +
1012B VAL* 3.6 2.7 - - - -
1014B ALA* 1.3 77.0 - - - +
1016B VAL* 1.3 71.6 + - + +
1017B LEU 3.4 0.2 + - - -
1018B ALA* 5.0 0.2 - - - -
1019B ILE* 3.1 29.6 + - + +
22H ILE* 5.9 8.3 - - + -
26H ILE* 6.0 1.6 - - + -
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Residues in contact with VAL1016 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1012B VAL* 3.0 23.1 + - + +
1013B THR* 4.3 2.2 - - - +
1015B THR* 1.3 82.3 - - + +
1017B LEU* 1.3 68.0 + - + +
1019B ILE* 3.4 5.5 - - - +
1020B PHE* 3.1 26.9 - - - -
22H ILE* 5.1 9.6 - - + +
25H LEU* 4.5 22.0 - - + -
26H ILE* 4.0 26.7 - - + -
29H LEU* 3.0 38.4 - - + -
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Residues in contact with LEU1017 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
548B ILE* 4.5 22.9 - - + -
907B LEU* 3.8 20.6 - - + -
910B ILE* 4.8 11.9 - - + -
1013B THR* 2.9 38.9 + - + +
1016B VAL* 1.3 89.3 - - + +
1018B ALA* 1.3 63.1 + - - +
1019B ILE 3.2 0.7 - - - -
1020B PHE* 3.2 5.4 + - - +
1021B PHE* 3.0 39.6 + - + -
29H LEU* 4.4 11.0 - - + -
33H PHE* 5.3 8.3 - - + -
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Residues in contact with ALA1018 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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904B VAL* 4.1 22.2 - - + -
907B LEU* 3.6 13.1 - - + +
938B SER* 5.1 6.5 - - - +
941B ASN* 5.8 7.6 - - + +
942B ALA 6.3 0.4 - - - +
945B ILE* 5.7 1.1 - - + -
1014B ALA* 2.8 24.3 + - - +
1015B THR 4.3 0.9 - - - +
1017B LEU* 1.3 78.0 - - - +
1019B ILE* 1.3 62.1 + - + +
1022B VAL* 2.9 39.3 + - + +
1023B PRO* 3.8 0.5 - - - +
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Residues in contact with ILE1019 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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527B TYR* 2.9 47.1 + - + +
531B VAL* 4.2 0.3 - - - +
945B ILE* 5.2 7.6 - - + -
968B VAL* 4.0 0.3 - - - +
972B LEU* 4.1 11.9 - - + -
975B ILE* 4.2 33.7 - - + -
976B LEU* 4.9 4.0 - - + -
1015B THR* 3.1 17.5 - - + +
1016B VAL 3.4 17.0 - - - +
1018B ALA* 1.3 78.4 - - + +
1020B PHE* 1.3 60.7 + - + +
1023B PRO* 3.1 18.4 - - - +
26H ILE* 4.0 33.7 - - + -
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Residues in contact with PHE1020 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
527B TYR* 3.7 26.7 - + - -
530B SER* 4.2 20.2 - - - -
531B VAL* 4.0 12.6 - - + +
534B ILE* 3.7 28.1 - - + +
1016B VAL* 3.1 26.7 - - + -
1017B LEU* 3.2 5.8 + - - +
1018B ALA 3.1 0.6 - - - -
1019B ILE* 1.3 83.3 - - + +
1021B PHE* 1.3 67.7 + - + +
1023B PRO* 3.3 15.3 - - - +
1024B VAL* 3.3 15.6 - - - +
26H ILE* 3.8 29.4 - - + -
29H LEU* 4.0 20.6 - - + -
30H GLY* 4.0 9.2 - - - -
33H PHE* 3.8 19.1 - + + -
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Residues in contact with PHE1021 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
541B TYR* 3.7 35.7 - + + -
544B LEU* 4.4 14.4 - - + -
545B TYR* 4.1 9.9 - + + -
548B ILE* 3.9 26.5 - - + -
907B LEU* 3.9 11.9 - - + -
1017B LEU* 3.0 42.3 + - + +
1020B PHE* 1.3 82.3 - - + +
1022B VAL* 1.3 58.8 + - - +
1023B PRO 3.3 0.4 - - - -
1024B VAL* 2.7 29.7 + - + +
1025B PHE* 2.8 44.8 + + + -
33H PHE* 4.8 15.7 - + - -
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Residues in contact with VAL1022 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
900B SER 4.5 6.4 - - - +
904B VAL* 4.2 9.9 - - + -
942B ALA* 4.1 26.2 - - + -
945B ILE* 3.8 36.6 - - + -
946B VAL* 4.7 7.6 - - + -
1018B ALA* 2.9 34.4 + - + +
1021B PHE* 1.3 68.9 - - - +
1023B PRO* 1.3 64.3 - - + +
1025B PHE* 3.0 16.1 + - + +
1026B PHE* 2.6 36.4 + - + +
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Residues in contact with PRO1023 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
531B VAL* 4.2 16.8 - - + -
535B LEU* 3.3 14.2 - - + +
945B ILE* 5.7 1.6 - - + -
964B THR* 3.4 27.1 - - + -
968B VAL* 3.6 18.6 - - + -
1018B ALA 3.8 1.3 - - - +
1019B ILE* 3.1 28.5 - - - +
1020B PHE* 3.3 12.3 - - - +
1021B PHE 3.5 1.8 - - - -
1022B VAL* 1.3 96.8 - - + +
1024B VAL* 1.3 59.3 + - - +
1026B PHE* 4.0 3.7 - - + +
1027B VAL* 3.1 20.1 + - - +
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Residues in contact with VAL1024 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
534B ILE* 3.5 29.4 - - + +
535B LEU* 4.0 11.0 - - + -
538B THR* 4.6 10.3 - - - -
541B TYR* 4.6 15.0 - - + -
542B LEU* 4.1 16.4 - - + -
1020B PHE 3.3 18.2 - - - +
1021B PHE* 2.7 21.4 + - + +
1023B PRO* 1.3 72.8 - - - +
1025B PHE* 1.3 56.4 + - + +
1027B VAL* 3.2 2.4 + - - +
1028B VAL* 2.8 52.8 + - + +
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Residues in contact with PHE1025 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
542B LEU* 5.1 9.9 - - + -
545B TYR* 3.2 46.2 - + + -
900B SER* 3.5 25.6 - - - +
903B LEU* 3.6 44.6 - - + -
904B VAL* 4.0 7.9 - - + -
907B LEU* 4.5 3.1 - - + -
1021B PHE* 2.8 40.8 + + + -
1022B VAL* 3.4 15.9 - - + +
1024B VAL* 1.3 80.1 - - + +
1026B PHE* 1.3 65.3 + - - +
1028B VAL* 4.8 4.3 - - + -
1029B VAL* 3.0 31.6 + - - +
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Residues in contact with PHE1026 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
897B ILE* 4.3 10.3 - - + -
900B SER* 3.9 14.3 - - - -
945B ILE* 6.3 1.3 - - + -
946B VAL* 3.7 34.8 - - + -
949B ALA* 3.7 26.7 - - + -
950B LYS* 4.4 12.3 - - + -
953B MET* 4.2 11.9 - - - -
960B LEU* 3.8 18.6 - - + -
964B THR* 3.4 20.4 - - + -
1022B VAL* 2.6 21.5 + - + +
1023B PRO* 4.0 6.1 - - + +
1025B PHE* 1.3 75.6 - - - +
1027B VAL* 1.3 61.1 + - - +
1029B VAL* 3.9 1.4 - - + +
1030B ARG* 3.0 60.4 + - + +
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Residues in contact with VAL1027 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
535B LEU* 3.5 21.3 - - + +
538B THR* 4.5 5.2 - - + -
960B LEU* 3.7 22.4 - - + +
961B ILE* 3.7 20.0 - - + -
964B THR* 3.6 21.5 - - + +
1023B PRO 3.1 20.3 + - - +
1024B VAL 3.7 1.6 - - - +
1026B PHE* 1.3 75.9 - - - +
1028B VAL* 1.3 64.5 + - - +
1030B ARG 3.5 0.2 + - - -
1031B ARG* 3.0 56.3 + - - +
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Residues in contact with VAL1028 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
538B THR* 3.9 24.9 - - + +
542B LEU* 4.1 25.1 - - + -
903B LEU* 6.2 1.6 - - + -
1024B VAL* 2.8 42.0 + - + +
1025B PHE* 4.1 9.0 - - + +
1027B VAL* 1.3 74.6 - - - +
1029B VAL* 1.3 67.2 + - + +
1031B ARG* 3.5 8.3 + - - +
1032B ARG* 3.0 30.0 + - + +
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Residues in contact with VAL1029 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
896B SER* 3.5 34.5 + - - +
897B ILE* 4.3 8.3 - - + -
899B PHE* 4.6 8.3 - - + -
900B SER* 4.1 20.9 - - - +
903B LEU* 4.9 6.7 - - + -
1025B PHE* 3.0 22.4 + - - +
1026B PHE* 3.9 2.2 - - + +
1028B VAL* 1.3 80.4 - - + +
1030B ARG* 1.3 67.5 + - + +
1032B ARG* 3.3 1.9 + - - -
1033B PHE* 3.0 40.1 + - + +
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Residues in contact with ARG1030 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
896B SER* 5.2 5.4 + - - -
897B ILE* 4.1 27.1 - - + +
950B LYS* 6.0 2.4 - - - +
953B MET* 4.3 19.2 - - - +
960B LEU* 4.1 17.5 - - + -
1026B PHE* 3.0 57.7 + - + +
1027B VAL 4.0 2.9 - - - +
1029B VAL* 1.3 76.3 - - + +
1031B ARG* 1.3 63.5 + - - +
1033B PHE* 3.1 35.3 + - - +
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Residues in contact with ARG1031 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
535B LEU 4.0 7.4 + - - -
536B ARG* 5.9 1.4 - - - +
538B THR* 3.6 29.3 + - - +
960B LEU* 4.0 13.0 - - + +
961B ILE* 4.3 18.4 - - - +
1027B VAL* 3.0 35.1 + - - +
1028B VAL* 3.7 7.6 - - - +
1030B ARG* 1.3 75.3 - - - +
1032B ARG* 1.3 64.7 + - - +
1033B PHE 4.3 1.7 - - - -
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Residues in contact with ARG1032 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1028B VAL* 3.0 18.5 + - + +
1029B VAL* 3.9 4.0 - - - +
1031B ARG* 1.3 78.8 - - - +
1033B PHE* 1.3 86.6 + - + +
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Residues in contact with PHE1033 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
896B SER* 3.7 32.8 - - - +
899B PHE* 5.2 10.5 - + + -
1029B VAL* 3.0 29.7 + - + +
1030B ARG* 3.1 36.9 + - - +
1031B ARG 4.3 1.8 - - - -
1032B ARG* 1.3 106.3 - - + +
1105B D10 4.0 30.1 - - + -
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
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Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il