Contacts of the helix formed by residues 170 - 231 (chain E) in PDB entry 5SV1
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with VAL 170 (chain E).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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155E SER* 3.3 27.8 - - - +
156E PHE* 6.1 1.8 - - + -
159E ILE* 3.8 23.8 - - + -
165E THR 4.3 10.1 - - - +
166E ASN* 4.8 8.1 - - + -
167E LEU* 3.9 17.0 + - + +
168E ALA 3.6 0.2 - - - -
169E VAL* 1.3 74.3 - - - +
171E ALA* 1.3 63.1 + - - +
172E PRO 3.5 0.2 - - - -
173E GLY* 3.2 5.8 + - - -
174E ILE* 3.0 42.8 + - + +
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Residues in contact with ALA 171 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
156D PHE* 4.3 12.7 - - + +
159D ILE* 4.0 27.6 - - + -
160D ALA* 4.0 19.1 - - + -
167E LEU 3.9 5.6 + - - +
168E ALA 3.7 11.0 + - - +
169E VAL 3.0 2.0 - - - -
170E VAL* 1.3 78.5 - - - +
172E PRO* 1.3 69.4 - - + +
174E ILE* 3.2 6.3 + - - +
175E ALA* 2.8 25.1 + - - +
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Residues in contact with PRO 172 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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160D ALA* 5.2 6.3 - - + -
19E ALA* 6.1 5.4 - - + -
168E ALA 3.8 7.9 - - - +
169E VAL* 3.1 16.2 - - - +
171E ALA* 1.3 91.9 - - + +
173E GLY* 1.3 56.4 + - - +
175E ALA* 3.3 7.9 + - + +
176E GLU* 2.9 33.3 + - - +
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Residues in contact with GLY 173 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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151E GLY 3.8 15.9 - - - -
152E ILE 4.7 0.7 - - - -
154E ASN 5.1 0.7 - - - -
155E SER* 4.1 13.6 - - - +
169E VAL 4.7 0.4 + - - -
170E VAL 3.2 6.7 + - - -
172E PRO* 1.3 80.3 - - - +
174E ILE* 1.3 63.1 + - - +
176E GLU* 3.2 20.8 - - - +
177E ALA* 3.0 23.6 + - - +
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Residues in contact with ILE 174 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
156D PHE* 3.7 53.2 - - + -
152E ILE* 4.8 13.9 - - + -
155E SER* 5.1 1.6 - - - -
167E LEU* 6.0 0.9 - - + -
170E VAL* 3.0 40.6 + - + +
171E ALA 3.2 3.1 + - - +
173E GLY* 1.3 75.1 - - - +
175E ALA* 1.3 63.3 + - - +
177E ALA* 3.2 6.4 + - + +
178E LEU* 3.0 36.4 + - + +
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Residues in contact with ALA 175 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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153D MET* 4.0 12.4 - - + +
156D PHE* 4.9 5.1 - - + +
157D ILE* 4.4 27.1 - - + +
171E ALA 2.8 17.0 + - - +
172E PRO* 3.4 8.7 - - + +
174E ILE* 1.3 79.0 - - - +
176E GLU* 1.3 64.0 + - - +
177E ALA 3.2 0.3 + - - -
178E LEU* 3.3 1.5 + - - -
179E LEU* 2.9 24.0 + - - +
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Residues in contact with GLU 176 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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18E HIS 5.1 1.4 - - - +
19E ALA 3.4 17.0 - - - +
20E ASP* 4.1 0.9 - - - +
23E VAL* 3.3 37.1 - - + +
27E MET* 3.7 6.1 - - + +
151E GLY* 3.9 11.4 - - - -
154E ASN* 3.6 31.4 + - - +
172E PRO* 2.9 16.1 + - - +
173E GLY* 3.2 20.7 - - - +
175E ALA* 1.3 76.1 - - - +
177E ALA* 1.3 57.7 + - - +
179E LEU* 3.5 9.1 + - - +
180E ALA* 2.9 27.2 + - - +
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Residues in contact with ALA 177 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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147E GLY 4.5 1.3 - - - -
148E THR* 3.4 42.1 - - - +
151E GLY* 4.6 0.4 - - - -
152E ILE* 3.7 17.9 - - + +
173E GLY 3.0 18.3 + - - +
174E ILE* 3.5 5.4 - - + +
175E ALA 3.1 0.2 - - - -
176E GLU* 1.3 75.3 - - - +
178E LEU* 1.3 66.2 + - + +
180E ALA* 2.8 19.9 + - - +
181E THR 3.0 9.9 + - - -
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Residues in contact with LEU 178 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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149D VAL* 3.2 32.4 - - + +
152D ILE* 3.8 25.8 - - + +
153D MET* 3.7 42.4 - - + +
156D PHE* 4.7 0.7 - - + -
148E THR* 6.1 1.3 - - - -
174E ILE* 3.0 29.9 + - + +
177E ALA* 1.3 80.2 - - + +
179E LEU* 1.3 57.9 + - - +
181E THR* 4.4 5.2 - - - +
182E ALA* 2.9 24.9 + - - +
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Residues in contact with LEU 179 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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150D TRP* 4.8 10.1 - - + -
153D MET* 3.5 27.9 - - + -
16E TYR* 5.2 15.9 - - + +
27E MET* 3.5 30.5 - - + -
175E ALA 2.9 18.4 + - - +
176E GLU* 3.7 8.7 - - - +
178E LEU* 1.3 77.4 - - - +
180E ALA* 1.3 63.4 + - - +
182E ALA* 3.7 2.3 - - + +
183E ILE* 2.9 42.1 + - + +
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Residues in contact with ALA 180 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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23E VAL* 5.0 0.7 - - + -
26E VAL* 5.0 3.4 - - + -
27E MET* 3.5 16.5 - - + +
30E LEU* 4.3 2.1 - - - +
144E GLY* 3.7 10.9 - - - +
147E GLY* 3.4 16.2 - - - -
148E THR 3.3 24.7 - - - +
176E GLU 2.9 12.1 + - - +
177E ALA 2.8 10.5 + - - +
179E LEU* 1.3 77.2 - - - +
181E THR* 1.3 62.0 + - - +
183E ILE* 3.4 2.1 + - - +
184E GLY* 2.9 20.4 + - - -
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Residues in contact with THR 181 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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145D LEU* 4.0 14.6 - - + -
149D VAL* 3.5 31.6 - - + -
144E GLY 4.7 4.6 - - - -
145E LEU* 5.2 5.2 - - - +
148E THR* 3.0 22.7 - - - +
177E ALA 3.0 8.8 + - - -
178E LEU* 3.4 8.6 + - - +
180E ALA* 1.3 75.2 - - - +
182E ALA* 1.3 65.7 + - - +
184E GLY* 3.1 2.9 + - - -
185E LEU* 2.9 28.2 + - + +
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Residues in contact with ALA 182 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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146D PHE* 3.9 12.1 - - + -
149D VAL* 3.9 13.9 - - + -
150D TRP* 4.1 29.8 - - + +
153D MET* 5.2 1.6 - - - -
178E LEU 2.9 18.1 + - - +
179E LEU* 3.7 7.6 - - - +
181E THR* 1.3 79.2 - - - +
183E ILE* 1.3 65.1 + - + +
185E LEU* 3.3 3.8 + - - +
186E VAL* 3.0 27.9 + - - +
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Residues in contact with ILE 183 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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150D TRP* 5.5 6.1 - - + -
27E MET* 3.8 22.7 - - + +
30E LEU* 3.5 29.6 - - + +
31E ILE* 4.1 25.1 - - + +
179E LEU* 2.9 31.3 + - + +
180E ALA 4.0 2.5 - - - +
182E ALA* 1.3 78.2 - - + +
184E GLY* 1.3 63.0 + - - +
186E VAL* 3.8 11.3 - - + +
187E ALA* 2.9 24.0 + - + +
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Residues in contact with GLY 184 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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30E LEU* 3.6 15.8 - - - +
140E SER* 3.8 19.9 - - - -
141E PRO* 4.8 2.9 - - - -
144E GLY* 4.2 4.9 - - - -
180E ALA 2.9 14.9 + - - -
181E THR 3.1 4.0 + - - -
183E ILE* 1.3 77.6 - - - +
185E LEU* 1.3 57.4 + - - +
187E ALA 3.5 0.2 + - - -
188E ALA* 2.9 31.2 + - - +
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Residues in contact with LEU 185 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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142D PHE* 3.7 39.5 - - + +
145D LEU* 3.5 31.9 - - + -
146D PHE* 3.5 35.0 - - + +
141E PRO* 5.3 9.4 - - + -
181E THR* 2.9 24.5 + - + +
182E ALA 3.8 4.7 - - - +
184E GLY* 1.3 77.0 - - - +
186E VAL* 1.3 60.2 + - - +
188E ALA* 4.2 4.0 - - + -
189E ILE* 3.0 43.1 + - + +
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Residues in contact with VAL 186 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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146D PHE* 3.3 38.8 - - + -
150D TRP* 6.2 0.2 - - + -
34E SER* 4.1 13.4 + - - +
182E ALA 3.0 14.0 + - - +
183E ILE* 3.3 13.7 + - + +
185E LEU* 1.3 77.2 - - - +
187E ALA* 1.3 57.6 + - - +
190E PRO* 3.2 26.1 - - + +
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Residues in contact with ALA 187 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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30E LEU* 3.6 31.6 - - + +
33E ALA* 4.7 2.5 - - + -
34E SER* 4.4 17.1 - - - +
37E THR* 4.9 2.9 + - - +
136E ILE* 4.0 5.9 - - - +
140E SER* 3.7 16.2 - - - +
183E ILE* 2.9 16.9 + - + +
184E GLY 4.0 1.3 - - - +
186E VAL* 1.3 80.0 - - - +
188E ALA* 1.3 63.2 + - - +
190E PRO* 4.2 1.0 - - - +
191E ALA* 3.6 18.5 + - - +
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Residues in contact with ALA 188 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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142D PHE* 6.3 1.1 - - + -
137E GLY* 3.8 6.2 - - - +
140E SER* 3.5 7.4 - - - -
141E PRO* 3.5 31.4 - - + -
184E GLY 2.9 20.1 + - - +
185E LEU* 3.1 8.0 + - + +
187E ALA* 1.3 76.1 - - - +
189E ILE* 1.3 70.5 + - + +
191E ALA* 3.3 4.2 + - - +
192E VAL* 3.2 25.7 + - + +
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Residues in contact with ILE 189 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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139D ILE* 3.7 37.5 - - + +
142D PHE* 3.8 35.2 - - + +
143D VAL* 3.8 21.8 - - + +
146D PHE* 5.5 1.8 - - + -
185E LEU* 3.0 26.9 + - + +
186E VAL* 5.9 0.2 - - - -
188E ALA* 1.3 78.5 - - + +
190E PRO* 1.3 72.9 - - + +
192E VAL* 3.1 11.4 + - + +
193E VAL* 3.0 21.7 + - + +
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Residues in contact with PRO 190 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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34E SER* 5.4 0.7 - - - +
37E THR* 5.1 2.9 - - - +
38E TRP* 3.6 41.1 - - + +
186E VAL* 3.2 27.1 - - + +
187E ALA 4.2 1.3 - - - +
188E ALA 3.9 0.9 - - - -
189E ILE* 1.3 95.8 - - + +
191E ALA* 1.3 56.4 - - - +
193E VAL* 4.6 5.8 - - + +
194E ILE* 2.9 41.0 + - + +
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Residues in contact with ALA 191 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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37E THR* 3.7 18.4 - - + +
133E LEU* 3.8 12.9 - - - +
136E ILE* 3.6 17.7 - - + -
137E GLY* 3.4 26.9 - - - +
187E ALA 3.6 6.1 + - - +
188E ALA 3.3 6.7 + - - +
189E ILE 3.2 0.8 - - - -
190E PRO* 1.3 79.9 - - - +
192E VAL* 1.3 57.7 + - - +
194E ILE* 3.9 3.2 - - - +
195E TYR* 2.9 29.1 + - - +
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Residues in contact with VAL 192 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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139D ILE* 4.5 18.4 - - + -
133E LEU 5.3 0.7 - - - -
137E GLY* 3.5 28.9 - - - +
188E ALA* 3.3 15.5 - - + +
189E ILE* 3.1 16.8 + - + +
191E ALA* 1.3 73.4 - - - +
193E VAL* 1.3 73.3 + - + +
195E TYR* 3.2 8.4 + - - +
196E ASN* 2.9 33.3 + - - +
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Residues in contact with VAL 193 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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135D THR* 4.3 19.2 - - + +
139D ILE* 4.0 37.2 - - + -
189E ILE* 3.0 13.0 + - + +
190E PRO* 4.1 6.7 - - + +
192E VAL* 1.3 83.0 - - + +
194E ILE* 1.3 71.0 + - + +
196E ASN* 3.0 9.1 + - - +
197E VAL* 3.0 34.9 + - + +
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Residues in contact with ILE 194 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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37E THR* 4.4 12.3 - - - +
38E TRP* 4.5 20.4 - - + -
41E PHE* 3.6 49.4 - - + -
133E LEU* 3.7 23.6 - - + -
190E PRO* 2.9 27.1 + - + +
191E ALA* 4.0 2.7 - - - +
193E VAL* 1.3 81.3 - - + +
195E TYR* 1.3 64.3 + - - +
197E VAL* 3.3 7.5 + - + +
198E PHE* 2.9 34.4 + - + +
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Residues in contact with TYR 195 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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130E ASN* 3.6 44.0 - - + -
133E LEU* 4.2 12.1 - - + +
134E ALA* 3.8 24.9 - - + +
191E ALA 2.9 20.0 + - - +
192E VAL* 3.2 7.8 + - - +
194E ILE* 1.3 76.8 - - - +
196E ASN* 1.3 71.4 + - - +
198E PHE* 3.1 6.7 + - - +
199E ALA* 2.9 36.7 + - + +
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Residues in contact with ASN 196 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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135D THR* 4.0 25.7 - - + +
192E VAL* 2.9 25.5 + - - +
193E VAL* 3.0 7.5 + - - +
195E TYR* 1.3 89.0 - - - +
197E VAL* 1.3 63.7 + - + +
199E ALA* 3.1 9.3 + - - +
200E ARG* 3.0 23.9 + - - +
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Residues in contact with VAL 197 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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135D THR* 6.1 2.7 - - + -
193E VAL* 3.0 27.9 + - + +
194E ILE* 3.9 7.2 - - + +
196E ASN* 1.3 77.3 - - + +
198E PHE* 1.3 62.4 + - + +
200E ARG* 3.7 30.2 - - - +
201E GLN* 2.9 45.7 + - - +
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Residues in contact with PHE 198 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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40E ILE* 4.2 10.8 - - + -
41E PHE* 4.7 17.0 - + - -
44E LYS* 4.3 25.6 - - + -
45E SER* 4.9 7.6 - - - -
48E PHE* 6.1 3.8 - + + -
130E ASN* 3.2 39.0 - - - +
133E LEU* 3.6 28.3 - - + -
194E ILE* 2.9 25.3 + - + +
195E TYR* 3.1 8.3 + - - +
197E VAL* 1.3 82.8 - - + +
199E ALA* 1.3 60.0 + - - +
201E GLN* 4.2 18.6 - - + +
202E ILE* 2.9 36.5 + - + +
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Residues in contact with ALA 199 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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130E ASN* 4.8 1.0 + - - -
195E TYR* 2.9 26.5 + - + +
196E ASN* 3.1 13.0 + - - +
198E PHE* 1.3 74.6 - - - +
200E ARG* 1.3 65.7 + - - +
202E ILE* 4.2 3.8 - - - +
203E GLY* 2.9 21.5 + - - -
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Residues in contact with ARG 200 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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127D GLY 4.8 8.1 - - - -
128D ARG* 3.9 20.1 + - - +
131D GLY* 4.2 18.8 - - - +
132D TYR* 3.5 34.8 + - - -
196E ASN 3.0 12.7 + - - +
197E VAL* 3.7 31.0 - - - +
199E ALA* 1.3 78.1 - - - +
201E GLN* 1.3 65.2 + - - +
203E GLY* 3.2 1.0 + - - -
204E GLY* 2.9 24.9 + - - -
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Residues in contact with GLN 201 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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48E PHE* 3.4 46.7 - - + -
52E LYS* 5.0 7.0 + - - +
197E VAL* 2.9 34.5 + - + +
198E PHE* 4.2 19.7 - - + +
200E ARG* 1.3 81.4 - - - +
202E ILE* 1.3 62.0 + - + +
204E GLY* 3.3 1.7 + - - +
205E PHE* 2.8 32.4 + - - +
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Residues in contact with ILE 202 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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48E PHE* 5.4 1.8 - - + -
123E GLY* 5.0 7.4 - - - +
126E MET* 3.6 61.4 - - + +
127E GLY* 3.7 6.1 - - - +
130E ASN* 3.5 25.4 - - - +
198E PHE* 2.9 19.7 + - + +
199E ALA* 4.2 3.6 - - - +
201E GLN* 1.3 75.4 - - + +
203E GLY* 1.3 65.1 + - - +
205E PHE* 4.2 0.2 - - - +
206E LYS* 2.9 30.7 + - + +
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Residues in contact with GLY 203 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
124D ARG* 5.9 1.3 - - - -
199E ALA 2.9 16.8 + - - -
200E ARG* 3.6 3.4 - - - -
202E ILE* 1.3 78.7 - - - +
204E GLY* 1.3 55.7 + - - +
206E LYS* 3.7 7.8 - - - +
207E ALA* 2.9 27.9 + - - +
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Residues in contact with GLY 204 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
124D ARG* 4.7 14.1 + - - -
52E LYS* 5.6 5.2 - - - -
200E ARG 2.9 14.5 + - - -
201E GLN* 3.8 2.5 - - - -
203E GLY* 1.3 74.3 - - - +
205E PHE* 1.3 57.4 + - - +
207E ALA* 3.2 8.6 + - - +
208E MET* 2.9 31.7 + - - +
----------------------------------------------------------
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Residues in contact with PHE 205 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
48E PHE* 4.0 16.2 - + + -
51E GLN* 4.2 18.4 - - + -
52E LYS* 4.0 40.9 - - + +
55E LEU* 3.6 29.6 - - + -
83E LEU* 4.4 18.2 - - + -
122E VAL* 4.6 13.7 - - + -
126E MET* 3.4 38.4 - - + -
201E GLN 2.8 21.1 + - - +
202E ILE 4.2 0.4 - - - +
204E GLY* 1.3 67.7 - - - +
206E LYS* 1.3 68.4 + - - +
207E ALA 3.0 1.8 - - - -
208E MET* 3.1 5.6 + - + +
209E LEU* 2.9 25.8 + - + +
----------------------------------------------------------
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Residues in contact with LYS 206 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
119E VAL* 4.1 21.2 - - + +
120E ALA* 5.7 6.3 - - - +
123E GLY* 5.0 18.2 - - - -
126E MET* 6.1 1.3 - - + +
202E ILE* 2.9 26.4 + - + +
203E GLY* 3.7 5.8 - - - +
205E PHE* 1.3 79.7 - - - +
207E ALA* 1.3 57.0 + - - +
209E LEU* 3.6 6.9 + - - +
210E GLY* 3.0 24.8 + - - -
----------------------------------------------------------
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Residues in contact with ALA 207 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
117D ARG* 3.9 7.3 + - - +
124D ARG* 3.5 36.6 - - - +
203E GLY 2.9 15.5 + - - +
204E GLY 3.3 9.0 - - - +
205E PHE 3.0 0.2 - - - -
206E LYS* 1.3 77.6 - - - +
208E MET* 1.3 63.5 + - - +
210E GLY* 3.0 5.4 + - - -
211E ASP* 2.9 26.2 + - - +
----------------------------------------------------------
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Residues in contact with MET 208 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
124D ARG* 5.1 7.8 - - - +
52E LYS* 4.2 30.1 - - + +
55E LEU* 3.6 27.6 - - + -
56E LYS* 4.3 38.6 - - - +
59E GLN* 3.6 19.5 - - - +
204E GLY 2.9 14.6 + - - +
205E PHE* 3.7 9.0 - - + +
207E ALA* 1.3 74.6 - - - +
209E LEU* 1.3 64.1 + - - +
211E ASP* 2.8 23.0 + - + +
212E VAL* 3.1 14.0 + - - +
----------------------------------------------------------
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Residues in contact with LEU 209 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
55E LEU* 3.8 26.7 - - + +
83E LEU* 3.6 33.9 - - + -
84E SER* 5.9 0.2 - - - +
87E LEU* 4.6 12.9 - - + +
119E VAL* 4.0 26.2 - - + -
122E VAL* 3.9 35.9 - - + -
205E PHE* 2.9 19.8 + - + +
206E LYS* 3.7 6.3 - - - +
208E MET* 1.3 74.1 - - - +
210E GLY* 1.3 64.3 + - - +
212E VAL* 3.2 6.0 + - + +
213E ALA* 2.9 23.0 + - - +
----------------------------------------------------------
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Residues in contact with GLY 210 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
117D ARG* 3.0 25.6 + - - -
116E GLU* 5.2 7.5 - - - +
119E VAL* 4.5 9.3 - - - +
206E LYS 3.0 12.5 + - - -
207E ALA 3.0 5.8 + - - -
209E LEU* 1.3 77.0 - - - +
211E ASP* 1.3 56.0 + - - +
213E ALA* 3.5 6.7 + - - +
214E ALA* 2.9 26.9 + - - +
----------------------------------------------------------
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Residues in contact with ASP 211 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
117D ARG* 2.7 42.1 + - - +
121D ALA* 5.3 4.7 - - - +
124D ARG* 4.3 15.6 + - - -
59E GLN* 4.5 21.7 + - - +
207E ALA 2.9 11.6 + - - +
208E MET* 2.8 16.6 + - - +
210E GLY* 1.3 73.9 - - - +
212E VAL* 1.3 65.0 + - - +
214E ALA* 3.2 6.8 + - - +
215E GLN* 3.0 20.6 + - - +
----------------------------------------------------------
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Residues in contact with VAL 212 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
55E LEU* 4.3 19.1 - - + -
59E GLN* 3.6 39.5 - - + +
62E LEU* 4.5 13.2 - - + -
84E SER* 3.3 27.1 - - - +
87E LEU* 4.2 13.7 - - + -
208E MET 3.1 12.8 + - - +
209E LEU* 3.9 6.7 - - + +
211E ASP* 1.3 74.2 - - - +
213E ALA* 1.3 66.0 + - - +
215E GLN* 3.0 17.0 + - - +
216E VAL* 3.1 15.8 + - + +
----------------------------------------------------------
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Residues in contact with ALA 213 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
87E LEU* 3.8 21.2 - - + +
115E LEU* 4.1 16.9 - - + +
116E GLU* 5.0 9.2 - - - +
119E VAL* 4.2 15.5 - - + -
209E LEU 2.9 16.3 + - - +
210E GLY* 3.7 5.4 - - - +
212E VAL* 1.3 76.6 - - - +
214E ALA* 1.3 63.1 + - - +
216E VAL* 2.9 9.0 + - - +
217E LEU* 2.9 26.4 + - + +
----------------------------------------------------------
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Residues in contact with ALA 214 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
113D PHE* 3.3 35.2 - - + -
117D ARG* 4.3 15.0 - - + +
116E GLU* 5.4 0.8 + - - -
210E GLY 2.9 18.0 + - - +
211E ASP* 3.2 8.5 + - - +
213E ALA* 1.3 74.3 - - - +
215E GLN* 1.3 62.6 + - - +
217E LEU* 3.3 4.5 + - - +
218E LEU* 3.0 33.1 + - + +
----------------------------------------------------------
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Residues in contact with GLN 215 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
59E GLN* 6.6 0.4 - - + -
62E LEU* 3.6 36.0 + - + +
63E ALA* 4.5 11.0 + - - +
65E ALA 4.4 5.3 + - - -
211E ASP 3.0 12.0 + - - +
212E VAL* 3.3 13.0 - - + +
214E ALA* 1.3 78.4 - - - +
216E VAL* 1.3 63.8 + - + +
218E LEU* 3.3 12.4 + - - +
219E LEU* 3.0 55.9 + - + +
222E ARG* 5.8 0.8 + - - +
----------------------------------------------------------
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Residues in contact with VAL 216 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
62E LEU* 5.2 6.7 - - + -
68E LEU* 5.2 3.0 - - + +
71E ALA* 6.0 0.2 - - + -
84E SER* 6.5 0.2 - - - -
87E LEU* 4.6 9.6 - - + +
88E LEU* 3.6 39.9 - - + +
91E ALA* 3.8 29.8 - - + -
111E THR* 5.6 0.2 - - + -
115E LEU* 3.8 15.3 - - + -
212E VAL* 3.1 16.4 + - + +
213E ALA* 2.9 9.0 + - - +
215E GLN* 1.3 77.8 - - + +
217E LEU* 1.3 64.5 + - + +
219E LEU* 3.2 8.6 + - + +
220E GLN* 3.0 22.3 + - + +
----------------------------------------------------------
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Residues in contact with LEU 217 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
113D PHE* 4.4 19.1 - - + -
108E MLY 5.1 0.9 - - - +
111E THR* 3.5 32.8 - - + -
112E SER* 3.7 36.3 - - - +
115E LEU* 3.7 15.0 - - + -
116E GLU* 4.3 17.3 - - + +
213E ALA 2.9 16.0 + - - +
214E ALA* 3.8 7.6 - - - +
215E GLN 3.3 0.2 - - - -
216E VAL* 1.3 76.6 - - - +
218E LEU* 1.3 66.6 + - + +
220E GLN* 3.3 5.3 + - - +
221E SER* 3.0 25.9 + - - -
----------------------------------------------------------
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Residues in contact with LEU 218 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
94D GLU* 5.2 1.8 - - - +
110D ARG* 3.6 39.7 - - + +
113D PHE* 4.1 21.1 - - + -
114D ARG* 3.6 32.3 - - + +
214E ALA* 3.0 26.1 + - + +
215E GLN* 3.7 13.0 - - - +
217E LEU* 1.3 78.1 - - + +
219E LEU* 1.3 65.3 + - + +
221E SER* 3.8 3.1 - - - -
222E ARG* 2.9 41.2 + - - +
----------------------------------------------------------
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Residues in contact with LEU 219 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
62E LEU 5.5 0.2 - - - +
65E ALA* 4.1 17.9 - - + +
66E ARG 4.8 2.0 - - - +
67E SER* 3.1 37.7 - - - +
68E LEU* 4.4 7.9 - - + +
71E ALA* 4.1 17.3 - - + -
88E LEU* 6.1 0.4 - - + -
215E GLN* 3.0 43.9 + - + +
216E VAL* 3.8 6.7 - - + +
218E LEU* 1.3 76.2 - - + +
220E GLN* 1.3 64.6 + - - +
222E ARG* 3.4 28.2 - - - +
223E ASP* 3.0 30.4 + - - +
----------------------------------------------------------
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Residues in contact with GLN 220 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
68E LEU* 3.8 25.7 - - + +
91E ALA* 3.6 16.8 + - + -
95E LEU* 3.5 34.3 - - + +
107E ILE* 4.2 8.7 - - - +
108E MLY 4.4 9.9 - - - -
111E THR* 2.8 43.6 + - + +
216E VAL 3.0 16.3 + - - +
217E LEU* 3.7 5.7 - - - +
219E LEU* 1.3 77.6 - - - +
221E SER* 1.3 63.3 + - - +
223E ASP* 3.3 2.5 + - - +
224E LEU* 2.9 32.8 + - + +
----------------------------------------------------------
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Residues in contact with SER 221 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
109D GLU* 5.1 0.9 + - - -
110D ARG* 3.3 23.7 + - - +
108E MLY 3.4 45.7 - - - +
217E LEU 3.0 16.0 + - - -
218E LEU* 3.8 2.5 - - - -
220E GLN* 1.3 76.6 + - - +
222E ARG* 1.3 64.9 + - - +
224E LEU* 3.0 5.1 + - - +
225E ASP* 2.9 23.4 + - - +
----------------------------------------------------------
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Residues in contact with ARG 222 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
94D GLU* 2.6 53.9 + - - -
97D LEU* 3.9 45.4 + - - +
98D SER* 3.6 18.6 - - - +
110D ARG* 3.6 16.4 - - - +
114D ARG* 4.8 1.6 - - - +
66E ARG* 5.5 4.0 + - - +
215E GLN* 5.8 0.8 + - - +
218E LEU* 2.9 28.2 + - - +
219E LEU* 3.4 32.2 - - - +
221E SER* 1.3 76.0 - - - +
223E ASP* 1.3 60.2 + - - +
225E ASP* 3.3 2.0 + - + +
226E LEU* 2.9 40.8 + - + +
----------------------------------------------------------
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Residues in contact with ASP 223 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
66E ARG 4.9 1.6 - - - +
67E SER* 3.7 16.7 - - - -
68E LEU* 3.0 36.5 + - + +
219E LEU* 3.0 19.1 + - - +
220E GLN* 3.9 3.8 - - - +
222E ARG* 1.3 75.1 - - - +
224E LEU* 1.3 68.0 + - + +
226E LEU* 3.8 11.4 - - - +
227E GLU* 2.9 39.3 + - + +
----------------------------------------------------------
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Residues in contact with LEU 224 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
95E LEU* 4.1 22.4 - - + -
104E ASN* 3.7 25.3 + - - +
107E ILE* 3.6 37.9 - - + -
108E MLY 4.2 21.1 - - + -
220E GLN* 2.9 24.0 + - + +
221E SER 3.5 6.7 - - - +
223E ASP* 1.3 77.5 - - + +
225E ASP* 1.3 64.1 + - - +
227E GLU* 3.3 15.3 + - + +
228E ALA* 2.9 26.9 + - - +
----------------------------------------------------------
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Residues in contact with ASP 225 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
101D SER* 3.7 16.7 + - - +
103D ASP* 3.5 26.7 - - - +
106D GLY* 3.9 3.5 - - - -
110D ARG* 2.8 31.3 + - - +
104E ASN* 5.5 1.6 + - - +
108E MLY 2.8 33.0 + - - -
221E SER 2.9 7.1 + - - +
222E ARG 3.7 4.7 - - - +
224E LEU* 1.3 77.9 - - - +
226E LEU* 1.3 59.4 + - + +
228E ALA* 4.1 3.0 - - - +
229E SER* 2.9 36.8 + - - +
----------------------------------------------------------
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Residues in contact with LEU 226 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
97D LEU 4.1 17.5 - - - +
98D SER* 4.0 5.6 - - - +
99D GLU 4.0 13.7 - - - +
100D GLY* 4.1 3.1 - - - +
101D SER* 3.8 35.7 - - - +
222E ARG* 2.9 28.1 + - + +
223E ASP* 4.1 11.9 - - - +
225E ASP* 1.3 76.4 - - + +
227E GLU* 1.3 51.8 + - + +
229E SER* 4.7 1.8 - - - +
230E ALA* 2.7 39.3 + - - +
----------------------------------------------------------
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Residues in contact with GLU 227 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
223E ASP* 2.9 30.2 + - + +
224E LEU* 3.8 15.1 - - + +
226E LEU* 1.3 75.0 - - + +
228E ALA* 1.3 66.2 + - - +
230E ALA* 3.1 14.0 + - - +
231E ALA* 3.2 14.0 + - - +
----------------------------------------------------------
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Residues in contact with ALA 228 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
104E ASN* 3.6 19.3 - - - +
224E LEU 2.9 17.0 + - - +
225E ASP* 4.1 3.6 - - - +
227E GLU* 1.3 77.7 - - - +
229E SER* 1.3 63.0 + - - +
231E ALA* 3.4 18.8 - - - +
232E ALA* 4.0 4.5 - - - +
----------------------------------------------------------
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Residues in contact with SER 229 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
100D GLY 3.8 15.5 - - - +
101D SER* 4.1 1.9 + - - -
102D ASP* 3.0 49.4 + - - +
103D ASP* 4.3 5.2 + - - +
225E ASP* 2.9 19.4 + - - -
226E LEU* 4.5 1.1 - - - -
228E ALA* 1.3 76.9 - - - +
230E ALA* 1.3 63.8 + - - +
231E ALA 3.6 0.2 + - - -
232E ALA* 3.7 14.5 + - - +
233E HIS* 4.2 1.6 + - - +
234E PRO* 4.2 6.4 - - - +
----------------------------------------------------------
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Residues in contact with ALA 230 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
100D GLY 5.7 1.1 - - - -
226E LEU 2.7 23.1 + - - +
227E GLU* 3.1 7.1 + - - +
229E SER* 1.3 78.4 - - - +
231E ALA* 1.3 58.3 + - - +
234E PRO* 3.1 32.5 - - + +
----------------------------------------------------------
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Residues in contact with ALA 231 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
227E GLU 3.2 12.2 + - - +
228E ALA 3.4 10.8 - - - +
230E ALA* 1.3 75.5 - - - +
232E ALA* 1.3 56.2 + - - +
234E PRO* 4.9 2.5 - - - -
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il