Contacts of the helix formed by residues 171 - 231 (chain A) in PDB entry 5SV1
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ALA 171 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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168A ALA 3.2 6.5 + - - +
170A VAL* 1.3 72.8 - - - +
172A PRO* 1.3 69.5 - - + +
173A GLY 3.3 0.2 - - - -
174A ILE* 3.0 5.5 + - - +
175A ALA* 2.7 28.8 + - - +
156E PHE* 3.5 36.7 - - + +
159E ILE* 3.7 27.8 - - + +
160E ALA* 3.8 7.4 - - + -
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Residues in contact with PRO 172 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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15A MET* 5.7 7.1 - - + +
18A HIS* 3.4 40.5 - - + +
168A ALA 4.0 2.9 - - - +
169A VAL 3.3 15.9 - - - +
171A ALA* 1.3 93.9 - - + +
173A GLY* 1.3 62.2 + - - +
175A ALA* 3.1 9.8 + - + +
176A GLU* 2.8 27.4 + - - +
157E ILE* 6.6 0.2 - - - -
160E ALA* 4.2 16.4 - - + -
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Residues in contact with GLY 173 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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18A HIS* 4.1 19.5 + - - -
19A ALA* 5.3 2.1 - - - -
151A GLY* 5.1 6.2 - - - -
155A SER* 4.1 5.4 - - - -
170A VAL* 4.1 20.4 - - - +
171A ALA 3.3 0.8 - - - -
172A PRO* 1.3 78.5 - - - +
174A ILE* 1.3 58.2 + - - +
176A GLU* 3.2 6.0 + - - +
177A ALA* 3.0 26.5 + - - +
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Residues in contact with ILE 174 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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152A ILE* 4.2 26.0 - - + -
155A SER* 3.5 25.3 + - - +
156A PHE* 5.6 6.1 - - + -
159A ILE* 6.4 1.8 - - + -
170A VAL* 3.9 14.5 - - + +
171A ALA 3.0 8.3 + - - +
173A GLY* 1.3 72.8 - - - +
175A ALA* 1.3 66.1 + - - +
177A ALA* 3.2 7.4 + - - +
178A LEU* 2.9 32.1 + - + +
156E PHE* 3.4 44.0 - - + -
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Residues in contact with ALA 175 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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15A MET* 3.8 18.7 - - + +
171A ALA 2.7 17.1 + - - +
172A PRO* 3.1 13.7 + - + +
174A ILE* 1.3 73.2 - - - +
176A GLU* 1.3 57.0 + - - +
178A LEU* 4.6 1.6 - - - -
179A LEU* 3.0 23.4 + - - +
153E MET* 3.3 20.9 - - + +
156E PHE* 4.3 13.0 - - + +
157E ILE* 4.2 18.6 - - + +
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Residues in contact with GLU 176 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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15A MET* 2.9 53.6 - - - +
16A TYR* 3.3 16.6 + - - +
19A ALA* 3.4 34.1 - - + +
23A VAL* 4.6 4.8 - - + +
27A MET* 3.8 20.0 - - + +
172A PRO 2.8 15.0 + - - +
173A GLY* 3.5 5.8 - - - +
175A ALA* 1.3 74.7 - - - +
177A ALA* 1.3 65.5 + - - +
179A LEU* 3.1 13.1 + - - +
180A ALA* 2.9 19.9 + - - +
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Residues in contact with ALA 177 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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23A VAL* 5.3 2.8 - - - +
147A GLY 4.5 2.0 - - - -
148A THR* 2.5 58.3 + - + +
151A GLY* 4.1 13.0 - - - -
152A ILE* 4.1 9.0 - - + -
173A GLY 3.0 12.2 + - - +
174A ILE 3.6 7.0 - - - +
176A GLU* 1.3 75.0 - - - +
178A LEU* 1.3 52.8 + - - +
180A ALA* 2.7 25.8 + - - +
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Residues in contact with LEU 178 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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148A THR* 3.9 21.3 - - + -
152A ILE* 4.8 8.5 - - + -
174A ILE* 2.9 33.0 + - + +
175A ALA* 3.8 5.2 - - - +
177A ALA* 1.3 74.4 - - - +
179A LEU* 1.3 57.3 + - - +
181A THR* 3.3 2.3 + - - -
182A ALA* 3.0 23.9 + - - +
149E VAL* 3.3 24.9 - - + +
152E ILE* 3.6 38.8 - - + +
153E MET* 3.9 25.8 - - + -
156E PHE* 4.6 6.5 - - + -
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Residues in contact with LEU 179 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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15A MET* 4.7 9.4 - - + -
27A MET* 3.8 15.0 - - - -
175A ALA 3.0 15.8 + - - +
176A GLU* 3.4 18.2 - - - +
177A ALA 3.1 0.4 - - - -
178A LEU* 1.3 76.9 - - - +
180A ALA* 1.3 57.2 + - - +
182A ALA* 3.9 5.8 - - + -
183A ILE* 2.9 60.9 + - + +
150E TRP* 3.6 31.9 - - + -
153E MET* 3.9 12.5 - - - -
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Residues in contact with ALA 180 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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23A VAL* 4.6 10.3 - - + -
26A VAL* 4.6 8.5 - - + -
27A MET* 4.6 11.2 - - + -
30A LEU* 4.0 2.6 - - - +
144A GLY* 3.5 22.2 - - - +
147A GLY* 4.0 17.9 - - - -
148A THR 4.0 0.2 - - - +
176A GLU 2.9 11.4 + - - +
177A ALA* 2.7 21.6 + - - +
179A LEU* 1.3 69.1 - - - +
181A THR* 1.3 57.9 + - - +
183A ILE* 3.5 3.0 + - - +
184A GLY 2.9 22.5 + - - -
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Residues in contact with THR 181 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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141A PRO 6.0 0.7 - - - +
144A GLY* 3.8 16.5 + - - -
145A LEU* 3.9 14.1 - - + +
148A THR* 2.7 25.3 + - - +
177A ALA 3.1 6.5 + - - -
178A LEU* 3.9 7.4 - - - -
180A ALA* 1.3 75.7 - - - +
182A ALA* 1.3 65.6 + - - +
184A GLY* 3.0 1.2 + - - -
185A LEU* 2.9 37.8 + - + +
145E LEU* 5.6 3.6 - - + -
149E VAL* 4.1 25.1 - - + -
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Residues in contact with ALA 182 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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178A LEU 3.0 17.6 + - - +
179A LEU* 3.6 20.0 - - + +
180A ALA 3.3 0.2 - - - -
181A THR* 1.3 78.1 - - - +
183A ILE* 1.3 58.1 + - - +
185A LEU* 3.3 1.6 + - - -
186A VAL* 3.0 27.3 + - - +
146E PHE* 3.5 36.4 - - + -
149E VAL* 4.1 10.7 - - + +
150E TRP* 4.1 8.7 - - + +
153E MET* 5.4 0.7 - - - -
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Residues in contact with ILE 183 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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27A MET* 4.0 22.4 - - + +
30A LEU* 3.7 27.6 - - + -
31A ILE* 4.6 20.6 - - + -
179A LEU* 2.9 48.7 + - + +
180A ALA* 4.0 3.8 - - - +
182A ALA* 1.3 73.1 - - - +
184A GLY* 1.3 65.2 + - - +
186A VAL* 3.1 16.1 + - + +
187A ALA* 2.8 23.4 + - + +
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Residues in contact with GLY 184 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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30A LEU* 3.6 20.1 - - - +
140A SER* 3.6 20.5 - - - -
141A PRO* 4.5 2.5 - - - -
144A GLY* 4.2 4.5 - - - -
180A ALA 2.9 14.0 + - - -
181A THR 3.0 4.0 + - - -
183A ILE* 1.3 76.2 - - - +
185A LEU* 1.3 57.2 + - - +
187A ALA* 3.4 0.5 + - - +
188A ALA* 2.9 28.8 + - - +
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Residues in contact with LEU 185 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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141A PRO* 3.9 25.1 - - + -
181A THR* 2.9 30.5 + - + +
182A ALA 3.9 3.1 - - - +
184A GLY* 1.3 75.9 - - - +
186A VAL* 1.3 59.0 + - - +
188A ALA* 4.1 4.9 - - + -
189A ILE* 3.0 41.6 + - + +
142E PHE* 3.9 26.9 - - + +
145E LEU* 4.0 23.1 - - + -
146E PHE* 3.7 41.3 - - + +
149E VAL* 5.4 0.4 - - + -
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Residues in contact with VAL 186 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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34A SER* 4.6 6.7 + - - +
182A ALA 3.0 14.3 + - - +
183A ILE* 3.1 28.9 + - + +
185A LEU* 1.3 78.2 - - - +
187A ALA* 1.3 60.9 + - - +
189A ILE* 5.4 1.3 - - - -
190A PRO* 3.1 23.1 - - - +
146E PHE* 4.8 17.2 - - + -
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Residues in contact with ALA 187 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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30A LEU* 3.8 32.1 - - + +
33A ALA* 5.0 1.8 - - + -
34A SER* 4.5 15.7 - - - +
37A THR* 5.1 2.9 + - - +
136A ILE* 4.4 4.2 - - + +
140A SER* 3.9 14.5 + - - +
183A ILE* 2.8 14.8 + - + +
184A GLY 3.8 3.8 - - - +
186A VAL* 1.3 78.7 - - + +
188A ALA* 1.3 64.9 + - - +
190A PRO* 3.6 12.3 - - - +
191A ALA* 3.9 9.7 + - - +
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Residues in contact with ALA 188 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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137A GLY* 3.8 8.5 - - - +
140A SER* 3.4 8.3 - - - -
141A PRO* 3.4 30.5 - - + -
184A GLY 2.9 17.6 + - - +
185A LEU* 3.2 9.1 + - + +
187A ALA* 1.3 77.0 - - - +
189A ILE* 1.3 71.4 + - + +
191A ALA* 3.3 5.5 + - - +
192A VAL* 3.2 26.8 + - + +
142E PHE* 6.4 0.9 - - + -
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Residues in contact with ILE 189 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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185A LEU* 3.0 22.7 + - + +
186A VAL* 5.4 0.9 - - - -
188A ALA* 1.3 79.1 - - + +
190A PRO* 1.3 70.6 - - + +
192A VAL* 3.0 18.4 + - + +
193A VAL* 3.0 30.0 + - + +
139E ILE* 4.1 28.7 - - + +
142E PHE* 3.6 41.3 - - + -
143E VAL* 4.8 16.2 - - + -
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Residues in contact with PRO 190 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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34A SER* 4.9 2.9 - - - +
37A THR* 4.9 4.5 - - - +
38A TRP* 3.6 41.5 - - + +
186A VAL 3.1 24.9 - - - +
187A ALA* 3.6 9.0 - - - +
189A ILE* 1.3 95.0 - - + +
191A ALA* 1.3 62.4 + - - +
193A VAL* 4.3 6.3 - - + -
194A ILE* 2.9 34.0 + - + +
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Residues in contact with ALA 191 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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37A THR* 4.1 14.1 - - + +
133A LEU* 3.7 18.8 - - - +
136A ILE* 3.8 15.3 - - + -
137A GLY* 3.5 24.9 - - - +
187A ALA 4.0 3.4 - - - +
188A ALA 3.3 9.6 + - - +
189A ILE 3.2 0.6 + - - -
190A PRO* 1.3 81.3 - - - +
192A VAL* 1.3 57.3 + - - +
194A ILE* 3.8 2.0 - - - +
195A TYR* 2.9 30.5 + - - +
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Residues in contact with VAL 192 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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133A LEU 5.5 0.4 - - - -
134A ALA* 6.5 0.2 - - - +
137A GLY* 3.7 26.2 - - - +
188A ALA* 3.2 18.6 - - + +
189A ILE* 3.0 9.9 + - + +
191A ALA* 1.3 75.8 - - - +
193A VAL* 1.3 63.6 + - + +
195A TYR* 3.2 10.1 + - + +
196A ASN* 3.0 35.6 + - - +
138E ALA* 6.5 0.9 - - + -
139E ILE* 5.4 9.0 - - + -
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Residues in contact with VAL 193 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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189A ILE* 3.0 33.3 + - + +
190A PRO* 4.1 5.6 - - + +
192A VAL* 1.3 74.8 - - - +
194A ILE* 1.3 64.9 + - + +
196A ASN* 3.0 4.3 + - - +
197A VAL* 3.0 35.5 + - + +
135E THR* 3.6 25.6 - - + -
139E ILE* 4.1 22.4 - - + -
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Residues in contact with ILE 194 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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37A THR* 4.3 14.6 - - - +
38A TRP* 4.1 20.4 - - + -
41A PHE* 3.6 52.3 - - + -
133A LEU* 3.5 24.0 - - + -
190A PRO* 2.9 28.2 + - + +
191A ALA* 3.8 2.9 - - - +
193A VAL* 1.3 76.3 - - + +
195A TYR* 1.3 63.7 + - - +
197A VAL* 3.2 9.6 + - - +
198A PHE* 2.9 32.2 + - + +
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Residues in contact with TYR 195 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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130A ASN* 3.6 39.4 - - + +
131A GLY* 5.0 0.4 - - - -
133A LEU* 4.2 11.6 - - + +
134A ALA* 3.7 33.0 - - + +
191A ALA 2.9 17.6 + - - +
192A VAL* 3.6 9.9 - - + +
194A ILE* 1.3 76.8 - - - +
196A ASN* 1.3 70.9 + - - +
198A PHE* 3.2 7.4 + - - +
199A ALA* 2.9 34.1 + - + +
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Residues in contact with ASN 196 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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192A VAL* 3.0 25.0 + - - +
193A VAL* 3.0 8.5 + - - +
195A TYR* 1.3 88.6 - - - +
197A VAL* 1.3 66.3 + - + +
199A ALA* 3.2 8.4 + - - +
200A ARG* 3.0 27.8 + - - +
134E ALA* 5.9 3.6 - - - +
135E THR* 4.6 25.0 + - + +
138E ALA* 5.6 5.5 - - - +
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Residues in contact with VAL 197 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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41A PHE* 6.1 5.4 - - + -
193A VAL* 3.0 28.0 + - + +
194A ILE* 3.9 7.4 - - - +
196A ASN* 1.3 75.8 - - + +
198A PHE* 1.3 62.0 + - + +
200A ARG* 3.4 20.0 + - + +
201A GLN* 2.9 57.4 + - + +
132E TYR* 6.6 0.2 - - + -
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Residues in contact with PHE 198 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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40A ILE* 4.4 5.6 - - + -
41A PHE* 4.5 17.0 - + - -
44A LYS* 4.2 26.2 - - + -
45A SER* 4.4 17.5 - - - -
48A PHE* 5.8 4.9 - + + -
130A ASN* 3.2 42.4 - - - +
133A LEU* 3.9 21.5 - - + -
194A ILE* 2.9 24.4 + - + +
195A TYR* 3.5 7.4 - - - +
196A ASN 3.1 0.2 - - - -
197A VAL* 1.3 79.9 - - + +
199A ALA* 1.3 59.9 + - - +
201A GLN* 4.2 16.1 - - + +
202A ILE* 2.9 38.6 + - + +
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Residues in contact with ALA 199 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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130A ASN* 5.0 0.8 + - - -
195A TYR* 2.9 24.1 + - + +
196A ASN* 3.2 11.6 + - - +
198A PHE* 1.3 76.8 - - - +
200A ARG* 1.3 63.8 + - - +
202A ILE* 3.8 5.6 - - - +
203A GLY* 2.9 21.1 + - - -
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Residues in contact with ARG 200 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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196A ASN* 3.0 18.4 + - - +
197A VAL* 3.8 19.5 - - - +
199A ALA* 1.3 76.0 - - - +
201A GLN* 1.3 66.6 + - + +
203A GLY* 3.1 3.9 + - - -
204A GLY* 3.0 19.8 + - - -
128E ARG* 4.9 12.3 - - - +
129E GLY* 4.4 15.6 - - - +
131E GLY* 3.9 33.1 - - - +
132E TYR* 4.0 28.5 - - - +
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Residues in contact with GLN 201 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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48A PHE* 3.3 41.3 - - + -
52A LYS* 5.2 4.7 + - - +
197A VAL* 2.9 40.6 + - + +
198A PHE* 4.2 17.8 - - + +
200A ARG* 1.3 77.5 - - + +
202A ILE* 1.3 58.1 + - + +
204A GLY* 3.3 3.0 + - - +
205A PHE* 2.9 28.1 + - - +
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Residues in contact with ILE 202 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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48A PHE* 4.7 10.3 - - + -
123A GLY* 5.3 1.3 - - - +
126A MET* 3.6 48.0 - - + +
127A GLY* 3.9 8.5 - - - +
130A ASN* 4.4 11.0 - - - +
198A PHE* 2.9 23.0 + - + +
199A ALA* 3.9 4.9 - - - +
201A GLN* 1.3 76.0 - - - +
203A GLY* 1.3 64.4 + - - +
205A PHE* 3.1 6.8 + - + +
206A LYS* 2.9 48.6 + - + +
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Residues in contact with GLY 203 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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199A ALA 2.9 16.2 + - - -
200A ARG* 3.1 4.5 + - - -
202A ILE* 1.3 79.4 - - - +
204A GLY* 1.3 62.5 + - - +
206A LYS* 3.4 8.1 + - - +
207A ALA* 3.0 21.3 + - - +
124E ARG* 5.0 3.6 - - - -
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Residues in contact with GLY 204 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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52A LYS* 4.9 5.2 - - - -
200A ARG 3.0 12.2 + - - -
201A GLN* 3.3 3.7 + - - -
203A GLY* 1.3 74.8 - - - +
205A PHE* 1.3 56.0 + - - +
207A ALA* 3.2 9.3 + - - +
208A MET* 2.9 36.2 + - - +
124E ARG* 4.9 6.7 - - - +
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Residues in contact with PHE 205 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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48A PHE* 3.9 18.2 - + + -
51A GLN* 4.4 22.2 - - + -
52A LYS* 4.5 12.5 - - + +
55A LEU* 3.6 32.8 - - + -
83A LEU* 4.0 21.1 - - + -
122A VAL* 4.0 16.2 - - + -
126A MET* 3.3 41.5 - - + -
201A GLN 2.9 18.0 + - - +
202A ILE* 3.4 6.5 - - + +
204A GLY* 1.3 73.0 - - - +
206A LYS* 1.3 69.5 + - + +
207A ALA 3.0 1.3 - - - -
208A MET* 3.1 12.5 + - + +
209A LEU* 2.9 27.3 + - + +
----------------------------------------------------------
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Residues in contact with LYS 206 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
119A VAL* 4.3 20.2 - - + +
120A ALA* 5.0 6.3 - - - +
122A VAL* 6.0 2.0 - - + -
123A GLY* 3.4 36.0 - - - +
126A MET* 6.4 0.2 - - + -
202A ILE* 2.9 34.7 + - + +
203A GLY* 3.7 7.4 - - - +
205A PHE* 1.3 76.0 - - + +
207A ALA* 1.3 58.1 + - - +
209A LEU* 4.1 5.6 - - - +
210A GLY* 2.8 26.0 + - - -
117E ARG* 5.0 0.3 + - - -
----------------------------------------------------------
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Residues in contact with ALA 207 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
203A GLY 3.0 15.1 + - - +
204A GLY* 3.3 9.9 - - - +
205A PHE 3.0 0.2 - - - -
206A LYS* 1.3 77.4 - - - +
208A MET* 1.3 58.3 + - - +
210A GLY 3.3 0.7 + - - -
211A ASP* 2.9 28.5 + - - -
117E ARG* 3.4 12.1 + - - +
124E ARG* 3.4 46.7 - - - +
----------------------------------------------------------
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Residues in contact with MET 208 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
52A LYS* 3.2 43.7 - - + +
55A LEU* 3.7 16.6 - - + -
56A LYS* 4.5 27.6 - - - -
59A GLN* 3.4 24.3 - - - +
204A GLY 2.9 18.2 + - - +
205A PHE* 3.7 13.0 - - + +
207A ALA* 1.3 72.7 - - - +
209A LEU* 1.3 65.3 + - - +
211A ASP* 2.8 20.2 + - - +
212A VAL* 3.0 15.0 + - - +
----------------------------------------------------------
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Residues in contact with LEU 209 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
55A LEU* 3.7 15.1 - - + +
83A LEU* 3.7 29.2 - - + -
87A LEU* 3.6 29.6 - - + -
119A VAL* 3.6 21.5 - - + -
122A VAL* 3.6 40.6 - - + -
205A PHE* 2.9 21.2 + - + +
206A LYS* 4.1 4.9 - - - +
208A MET* 1.3 76.1 - - - +
210A GLY* 1.3 57.8 + - - +
212A VAL* 3.1 8.0 + - + +
213A ALA* 2.9 26.5 + - - +
----------------------------------------------------------
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Residues in contact with GLY 210 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
116A GLU* 5.7 1.7 - - - +
119A VAL* 4.4 10.0 - - - +
206A LYS 2.8 20.9 + - - -
207A ALA 3.6 1.8 - - - -
209A LEU* 1.3 77.7 - - - +
211A ASP* 1.3 55.3 + - - +
213A ALA* 3.8 7.3 - - - +
214A ALA* 2.9 28.1 + - - +
113E PHE* 5.5 0.2 - - - -
117E ARG* 3.6 15.8 + - - -
----------------------------------------------------------
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Residues in contact with ASP 211 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
59A GLN* 4.7 19.2 + - - +
207A ALA 2.9 13.9 + - - +
208A MET* 2.8 15.5 + - - +
210A GLY* 1.3 74.9 - - - +
212A VAL* 1.3 60.1 + - - +
214A ALA* 3.3 4.1 + - - +
215A GLN* 2.9 26.9 + - - +
117E ARG* 2.5 44.6 + - - +
121E ALA* 5.1 6.9 - - - +
124E ARG* 4.6 10.5 + - - -
----------------------------------------------------------
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Residues in contact with VAL 212 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
55A LEU* 4.7 11.4 - - + -
59A GLN* 4.0 35.4 - - + -
62A LEU* 4.7 13.5 - - + -
84A SER* 3.5 30.1 - - - +
87A LEU* 4.0 14.6 - - + -
208A MET 3.0 13.7 + - - +
209A LEU* 3.1 9.2 + - + +
211A ASP* 1.3 72.9 - - - +
213A ALA* 1.3 68.6 + - - +
215A GLN* 3.0 18.3 + - + +
216A VAL* 3.0 18.2 + - + +
----------------------------------------------------------
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Residues in contact with ALA 213 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
87A LEU* 3.7 20.9 - - + -
115A LEU* 4.0 20.5 - - + +
116A GLU* 5.2 7.0 - - - +
119A VAL* 4.2 16.2 - - + -
209A LEU 2.9 17.1 + - - +
210A GLY* 3.8 4.3 - - - +
212A VAL* 1.3 76.5 - - - +
214A ALA* 1.3 64.1 + - - +
216A VAL* 3.2 5.3 + - - +
217A LEU* 2.9 28.6 + - + +
----------------------------------------------------------
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Residues in contact with ALA 214 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
210A GLY 2.9 19.7 + - - +
211A ASP* 3.5 5.4 - - - +
212A VAL 3.1 0.2 - - - -
213A ALA* 1.3 75.8 - - - +
215A GLN* 1.3 59.1 + - - +
217A LEU* 3.2 4.5 + - - +
218A LEU* 2.9 37.0 + - + +
113E PHE* 3.5 34.9 - - + -
117E ARG* 3.9 14.8 - - - -
----------------------------------------------------------
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Residues in contact with GLN 215 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
62A LEU* 3.9 30.5 + - + +
63A ALA* 4.3 13.0 + - - +
65A ALA 4.2 7.7 + - - -
211A ASP 2.9 13.7 + - - +
212A VAL* 3.0 12.1 + - + +
214A ALA* 1.3 76.0 - - - +
216A VAL* 1.3 63.4 + - + +
218A LEU* 3.3 16.0 + - - +
219A LEU* 3.0 52.8 + - + +
222A ARG* 5.5 2.4 + - - +
----------------------------------------------------------
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Residues in contact with VAL 216 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
62A LEU* 5.5 5.6 - - + -
68A LEU* 4.0 4.8 - - + +
71A ALA* 6.1 0.2 - - + -
84A SER 5.5 0.4 - - - +
87A LEU* 4.8 6.3 - - + -
88A LEU* 3.6 41.5 - - + +
91A ALA* 3.9 22.2 - - + -
115A LEU* 3.8 20.9 - - + -
212A VAL* 3.0 22.7 + - + +
213A ALA 3.6 7.2 - - - +
215A GLN* 1.3 77.2 - - + +
217A LEU* 1.3 65.2 + - + +
219A LEU* 3.2 10.9 + - + +
220A GLN* 3.0 22.2 + - + +
----------------------------------------------------------
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Residues in contact with LEU 217 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
108A MLY 5.4 0.2 - - - +
111A THR* 3.5 33.7 - - + -
112A SER* 3.2 36.6 - - - +
115A LEU* 3.7 15.0 - - + -
116A GLU* 4.6 14.8 - - - +
213A ALA* 2.9 19.6 + - + +
214A ALA* 3.6 9.9 - - - +
216A VAL* 1.3 77.4 - - - +
218A LEU* 1.3 63.0 + - - +
220A GLN* 3.2 6.5 + - - +
221A SER* 3.0 24.8 + - - -
113E PHE* 4.4 20.6 - - + -
----------------------------------------------------------
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Residues in contact with LEU 218 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
214A ALA* 2.9 23.4 + - + +
215A GLN* 3.7 17.5 - - - +
217A LEU* 1.3 78.3 - - - +
219A LEU* 1.3 65.6 + - + +
221A SER* 3.3 3.2 + - - -
222A ARG* 3.0 42.6 + - - +
110E ARG* 3.9 41.5 - - + +
113E PHE* 4.1 20.9 - - + -
114E ARG* 3.7 31.0 - - + +
----------------------------------------------------------
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Residues in contact with LEU 219 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
62A LEU 5.6 0.2 - - - +
65A ALA* 3.8 23.3 - - + +
66A ARG 4.7 1.8 - - - +
67A SER* 3.1 33.9 - - - +
68A LEU* 3.7 14.4 - - + -
71A ALA* 3.7 19.7 - - + -
215A GLN* 3.0 42.4 + - + +
216A VAL* 3.7 8.3 - - + +
218A LEU* 1.3 74.9 - - + +
220A GLN* 1.3 63.3 + - - +
222A ARG* 3.5 25.1 + - - +
223A ASP* 3.0 29.8 + - - +
----------------------------------------------------------
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Residues in contact with GLN 220 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
68A LEU* 3.4 16.9 - - + +
91A ALA* 4.0 19.4 + - + +
94A GLU* 5.2 0.2 - - - +
95A LEU* 4.3 14.7 - - + +
107A ILE* 4.2 14.3 - - - +
108A MLY 3.9 17.7 - - - +
111A THR* 2.7 45.5 + - + +
216A VAL* 3.0 15.1 + - + +
217A LEU* 3.6 11.0 - - - +
219A LEU* 1.3 77.0 - - - +
221A SER* 1.3 64.1 + - - +
223A ASP* 3.8 3.0 - - - +
224A LEU* 2.9 35.5 + - + +
----------------------------------------------------------
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Residues in contact with SER 221 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
108A MLY 3.8 38.9 - - - -
217A LEU 3.0 16.9 + - - -
218A LEU* 3.8 3.4 - - - -
220A GLN* 1.3 78.6 + - - +
222A ARG* 1.3 63.6 + - - +
224A LEU* 3.4 1.3 + - - +
225A ASP* 3.0 26.0 + - - +
109E GLU* 5.4 0.9 + - - -
110E ARG* 3.1 26.0 + - - +
----------------------------------------------------------
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Residues in contact with ARG 222 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
66A ARG* 5.3 6.9 + - - +
215A GLN* 5.5 2.8 + - - +
218A LEU* 3.0 29.8 + - - +
219A LEU* 3.8 29.1 - - - +
221A SER* 1.3 77.1 - - - +
223A ASP* 1.3 60.7 + - - +
225A ASP* 3.8 1.2 - - - +
226A LEU* 3.0 40.1 + - + +
94E GLU* 2.4 48.5 + - - -
97E LEU* 3.4 50.2 - - - +
98E SER* 3.7 16.4 - - - +
110E ARG* 3.5 14.6 - - - +
114E ARG* 4.4 4.0 - - - +
----------------------------------------------------------
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Residues in contact with ASP 223 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
66A ARG 5.0 1.0 - - - +
67A SER* 3.7 15.1 - - - -
68A LEU* 2.8 41.6 + - + +
69A ASN 4.7 0.2 + - - -
219A LEU 3.0 16.9 + - - +
220A GLN* 3.9 3.4 - - - +
222A ARG* 1.3 78.2 - - - +
224A LEU* 1.3 67.8 + - + +
226A LEU* 3.3 9.9 + - - +
227A GLU* 2.9 26.9 + - - +
----------------------------------------------------------
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Residues in contact with LEU 224 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
95A LEU* 4.2 20.6 - - + -
104A ASN* 3.4 30.4 + - + +
107A ILE* 3.7 37.7 - - + -
108A MLY 4.6 13.7 - - + -
220A GLN* 2.9 28.2 + - + +
221A SER 4.0 2.5 - - - +
223A ASP* 1.3 77.4 - - + +
225A ASP* 1.3 63.6 + - - +
227A GLU* 3.9 17.8 - - - +
228A ALA* 3.0 26.2 + - - +
----------------------------------------------------------
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Residues in contact with ASP 225 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
104A ASN* 5.0 1.9 + - - -
108A MLY 2.7 37.1 + - - -
221A SER 3.0 11.3 + - - +
222A ARG 3.8 2.2 - - - +
224A LEU* 1.3 78.6 - - - +
226A LEU* 1.3 59.7 + - + +
228A ALA* 3.8 4.2 - - - +
229A SER* 2.9 34.3 + - - -
101E SER* 3.7 11.3 + - - +
103E ASP* 3.6 30.3 - - - +
106E GLY* 4.1 1.0 - - - -
110E ARG* 2.6 34.2 + - - +
----------------------------------------------------------
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Residues in contact with LEU 226 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
222A ARG* 3.0 27.4 + - + +
223A ASP* 4.0 9.2 - - - +
225A ASP* 1.3 76.0 - - + +
227A GLU* 1.3 57.2 + - - +
229A SER* 4.0 2.5 - - - +
230A ALA* 2.9 31.4 + - - +
97E LEU 3.8 18.8 - - - +
98E SER* 3.9 6.7 - - - +
99E GLU 3.7 22.7 - - - +
100E GLY 4.2 2.2 - - - +
101E SER* 3.8 26.7 - - - +
----------------------------------------------------------
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Residues in contact with GLU 227 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
223A ASP 2.9 18.1 + - - +
224A LEU* 3.9 17.6 - - - +
226A LEU* 1.3 75.8 - - - +
228A ALA* 1.3 64.4 + - - +
230A ALA* 3.3 4.7 + - - +
231A ALA* 3.1 26.1 + - + +
----------------------------------------------------------
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Residues in contact with ALA 228 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
104A ASN* 3.8 16.2 - - - +
224A LEU 3.0 18.1 + - - +
225A ASP* 3.9 4.5 - - - +
227A GLU* 1.3 78.1 - - - +
229A SER* 1.3 58.8 + - - +
231A ALA* 3.6 5.1 + - - +
232A ALA* 3.1 28.3 + - - +
----------------------------------------------------------
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Residues in contact with SER 229 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
225A ASP 2.9 20.1 + - - -
226A LEU 4.0 3.4 - - - -
228A ALA* 1.3 76.3 - - - +
230A ALA* 1.3 63.1 + - - +
232A ALA* 3.3 11.5 + - - +
233A HIS* 3.7 9.7 + - - +
100E GLY 3.7 15.8 - - - +
101E SER* 3.6 3.9 + - - -
102E ASP* 2.6 53.0 + - - +
103E ASP* 4.0 3.1 + - - +
----------------------------------------------------------
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Residues in contact with ALA 230 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
226A LEU 2.9 20.1 + - - +
227A GLU* 3.3 5.1 + - - +
229A SER* 1.3 77.2 - - - +
231A ALA* 1.3 55.1 + - - +
232A ALA 3.3 0.7 - - - -
233A HIS 2.6 23.0 - - - +
234A PRO* 3.9 6.6 - - - +
----------------------------------------------------------
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Residues in contact with ALA 231 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
227A GLU* 3.1 18.2 + - + +
228A ALA* 3.6 4.9 - - - +
230A ALA* 1.3 75.3 - - - +
232A ALA* 1.3 58.6 + - - +
233A HIS 3.4 3.8 - - - -
234A PRO* 5.9 0.4 - - - -
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il