Contacts of the helix formed by residues 21 - 63 (chain C) in PDB entry 5SV1
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ILE 21 (chain C).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
20C ASP* 1.3 95.5 + - - +
22C VAL* 1.3 75.6 + - + +
24C LYS* 3.1 24.2 - - + +
25C CYS* 3.0 27.6 + - + +
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Residues in contact with VAL 22 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
20C ASP* 3.5 2.3 + - - +
21C ILE* 1.3 85.8 - - + +
23C VAL* 1.3 58.6 + - + +
25C CYS* 2.9 9.4 + - + +
26C VAL* 2.9 39.5 + - + +
146C PHE* 4.2 16.8 - - + -
150C TRP* 3.3 60.1 - - + +
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Residues in contact with VAL 23 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
19C ALA* 4.1 19.7 - - + -
20C ASP* 4.3 13.6 - - + +
21C ILE 3.4 0.2 - - - -
22C VAL* 1.3 76.9 - - + +
24C LYS* 1.3 57.3 + - - +
26C VAL* 3.9 7.3 - - + +
27C MET* 2.9 40.5 + - + +
147C GLY* 4.4 21.5 - - - +
150C TRP* 4.5 13.2 - - + -
151C GLY* 5.4 1.3 - - - +
176C GLU* 4.3 27.6 - - + +
179C LEU* 4.2 14.6 - - + -
180C ALA* 5.1 6.3 - - + +
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Residues in contact with LYS 24 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
16C TYR* 3.2 50.6 - - + +
17C GLN* 4.6 10.5 + - - +
19C ALA* 4.1 13.5 + - - +
20C ASP 3.1 23.9 + - - +
21C ILE* 3.1 27.1 + - + +
23C VAL* 1.3 80.0 - - - +
25C CYS* 1.3 54.7 + - - +
27C MET* 3.4 6.8 + - - +
28C ILE* 3.0 36.1 + - + +
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Residues in contact with CYS 25 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
21C ILE* 3.0 16.9 + - - +
22C VAL* 2.9 11.1 + - - +
24C LYS* 1.3 75.1 - - - +
26C VAL* 1.3 59.2 + - + +
28C ILE* 4.1 5.3 - - - +
29C GLY* 2.8 27.4 + - - -
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Residues in contact with VAL 26 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
22C VAL* 2.9 30.5 + - + +
23C VAL* 3.9 8.1 - - + +
24C LYS 3.4 0.2 - - - -
25C CYS* 1.3 76.1 - - + +
27C MET* 1.3 57.8 + - + +
29C GLY* 5.1 0.4 - - - -
30C LEU* 2.9 45.4 + - + +
143C VAL* 3.6 40.1 - - + +
144C GLY* 4.7 1.6 - - - -
146C PHE* 4.8 8.1 - - + -
147C GLY* 4.3 19.3 - - - +
180C ALA* 4.9 8.1 - - + -
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Residues in contact with MET 27 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
12C VAL* 5.3 9.2 - - + +
15C MET* 4.7 2.5 - - + +
16C TYR* 3.9 41.3 - - + +
19C ALA* 5.4 0.7 - - - -
23C VAL* 2.9 36.4 + - + +
24C LYS* 3.8 6.1 - - - +
26C VAL* 1.3 77.3 - - + +
28C ILE* 1.3 61.3 + - + +
30C LEU* 4.3 2.0 - - - +
31C ILE* 2.9 41.7 + - + +
179C LEU* 3.6 27.8 - - + -
180C ALA* 6.1 2.0 - - - +
183C ILE* 3.7 32.3 - - + -
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Residues in contact with ILE 28 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
16C TYR* 3.8 37.9 - - + +
24C LYS* 3.0 20.9 + - + +
25C CYS* 4.1 5.8 - - - +
27C MET* 1.3 78.4 - - + +
29C GLY* 1.3 58.2 + - - +
31C ILE* 3.9 8.5 - - + +
32C LEU* 3.0 52.6 + - + +
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Residues in contact with GLY 29 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
25C CYS 2.8 18.6 + - - -
26C VAL* 3.9 0.7 - - - -
28C ILE* 1.3 77.9 - - - +
30C LEU* 1.3 57.3 + - - +
32C LEU* 3.2 10.2 + - - +
33C ALA* 2.9 27.3 + - - +
143C VAL* 5.9 1.6 - - - -
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Residues in contact with LEU 30 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
26C VAL* 2.9 30.2 + - + +
29C GLY* 1.3 76.4 - - - +
31C ILE* 1.3 58.5 + - - +
33C ALA* 3.3 5.1 + - + +
34C SER* 2.9 28.9 + - - -
140C SER* 3.9 21.5 - - - +
143C VAL* 3.5 31.8 - - + +
144C GLY* 4.2 4.9 - - - -
180C ALA* 4.3 3.1 - - - +
183C ILE* 3.6 19.7 - - + -
184C GLY* 3.7 28.5 - - - +
187C ALA* 3.8 23.6 - - + +
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Residues in contact with ILE 31 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
27C MET* 2.9 27.8 + - + +
28C ILE* 3.9 10.1 - - + +
30C LEU* 1.3 75.4 - - - +
32C LEU* 1.3 70.5 + - + +
34C SER* 3.3 10.3 + - - -
35C VAL* 3.0 30.0 + - + +
183C ILE* 4.7 22.2 - - + -
186C VAL* 6.4 2.2 - - + -
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Residues in contact with LEU 32 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
28C ILE* 3.0 41.4 + - + +
29C GLY* 3.5 7.6 - - - +
31C ILE* 1.3 82.2 - - + +
33C ALA* 1.3 57.8 + - - +
35C VAL* 2.8 29.9 + - + +
36C VAL* 2.9 17.6 + - + +
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Residues in contact with ALA 33 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
29C GLY 2.9 14.2 + - - +
30C LEU* 3.3 13.2 + - + +
32C LEU* 1.3 74.8 - - - +
34C SER* 1.3 60.3 + - - +
36C VAL* 3.3 11.9 - - - +
37C THR* 2.7 29.1 + - - -
136C ILE* 3.6 25.5 - - + +
140C SER* 4.5 8.5 - - - +
187C ALA* 4.7 1.6 - - + -
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Residues in contact with SER 34 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
30C LEU 2.9 14.1 + - - -
31C ILE* 3.6 14.8 - - - -
33C ALA* 1.3 75.9 - - - +
35C VAL* 1.3 65.8 + - - +
37C THR* 3.2 5.9 + - - -
38C TRP* 3.0 49.2 + - - -
186C VAL* 4.2 18.8 + - - +
187C ALA* 4.6 15.1 - - - +
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Residues in contact with VAL 35 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
31C ILE* 3.0 26.0 + - + +
32C LEU* 2.8 20.3 + - + +
34C SER* 1.3 78.2 - - - +
36C VAL* 1.3 63.9 + - - +
38C TRP* 3.3 5.0 + - - +
39C ALA* 3.0 25.1 + - + +
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Residues in contact with VAL 36 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
32C LEU* 2.9 20.0 + - + +
33C ALA* 3.3 18.4 - - - +
35C VAL* 1.3 74.4 - - - +
37C THR* 1.3 64.2 + - - +
39C ALA* 3.2 5.6 + - - +
40C ILE* 2.9 43.8 + - + +
132C TYR* 4.9 7.9 - - + -
136C ILE* 3.7 19.3 - - + -
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Residues in contact with THR 37 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
33C ALA 2.7 19.5 + - - -
34C SER* 3.2 12.3 + - - -
36C VAL* 1.3 78.5 - - - +
38C TRP* 1.3 65.2 + - + +
40C ILE* 3.7 2.8 - - - +
41C PHE* 3.0 20.4 + - - +
133C LEU* 3.6 27.8 - - + +
136C ILE* 3.5 22.5 - - - +
187C ALA 4.9 2.5 + - - +
190C PRO* 4.2 5.4 - - + -
191C ALA* 3.9 19.6 - - - +
194C ILE* 3.9 20.8 - - + +
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Residues in contact with TRP 38 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
34C SER* 3.0 44.2 + - - +
35C VAL* 4.1 4.5 - - - +
37C THR* 1.3 76.2 - - + +
39C ALA* 1.3 66.9 + - - +
41C PHE* 3.1 26.1 + + - +
42C PHE* 3.0 45.8 + + + -
186C VAL* 5.9 1.2 - - - +
190C PRO* 3.4 40.0 - - + +
193C VAL* 6.3 0.4 - - + -
194C ILE* 3.7 21.8 - - + -
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Residues in contact with ALA 39 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
35C VAL* 3.0 21.0 + - + +
36C VAL* 3.7 6.3 - - - +
38C TRP* 1.3 72.7 - - - +
40C ILE* 1.3 67.2 + - + +
42C PHE* 3.1 8.2 + - - +
43C SER* 3.1 26.0 + - - -
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Residues in contact with ILE 40 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
36C VAL* 2.9 31.6 + - + +
37C THR 3.7 3.8 - - - +
39C ALA* 1.3 73.6 - - + +
41C PHE* 1.3 65.7 + - - +
43C SER* 4.1 5.2 - - - -
44C LYS* 3.0 45.8 + - + +
129C GLY* 4.3 8.3 - - - +
132C TYR* 3.6 38.8 - - + -
133C LEU* 3.7 33.2 - - + -
198C PHE* 4.3 2.0 - - + -
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Residues in contact with PHE 41 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
37C THR 3.0 14.9 + - - +
38C TRP* 3.3 26.5 - + - +
39C ALA 3.1 0.4 - - - -
40C ILE* 1.3 77.9 - - - +
42C PHE* 1.3 86.1 + + - +
45C SER* 2.8 43.3 + - - -
194C ILE* 3.8 32.1 - - + -
197C VAL* 5.3 9.0 - - + -
198C PHE* 3.7 31.6 - + - -
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Residues in contact with PHE 42 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
38C TRP* 3.0 41.4 + + + +
39C ALA* 3.1 5.8 + - - +
41C PHE* 1.3 100.8 - + - +
43C SER* 1.3 65.1 + - - +
45C SER* 2.8 23.2 + - - -
46C VAL* 3.0 12.6 + - - +
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Residues in contact with SER 43 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
39C ALA 3.1 16.0 + - - -
40C ILE* 3.5 5.7 + - - -
42C PHE* 1.3 76.8 - - - +
44C LYS* 1.3 76.2 + - - +
46C VAL* 3.1 11.6 - - - +
47C GLU* 3.0 26.2 + - - +
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Residues in contact with LYS 44 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
40C ILE* 3.0 36.5 + - + +
43C SER* 1.3 87.1 + - - +
45C SER* 1.3 57.2 + - - +
47C GLU* 3.9 21.7 + - - +
48C PHE* 2.9 53.9 + - + -
125C GLN 5.4 3.0 + - - -
126C MET 3.9 21.7 + - - -
128C ARG* 5.5 2.2 - - - +
129C GLY* 4.5 22.6 - - - +
130C ASN* 5.6 1.6 - - - +
198C PHE* 4.2 19.7 - - + -
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Residues in contact with SER 45 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
41C PHE* 2.8 37.5 + - - -
42C PHE* 2.8 16.8 + - - -
43C SER 3.1 0.2 - - - -
44C LYS* 1.3 76.5 - - - +
46C VAL* 1.3 77.1 + - - +
48C PHE* 3.3 4.8 + - - +
49C PHE* 2.9 25.3 + - - +
198C PHE* 5.0 6.1 - - - -
201C GLN* 5.8 1.6 - - - -
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Residues in contact with VAL 46 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
42C PHE 3.2 9.9 - - - +
43C SER* 3.1 24.2 - - - +
45C SER* 1.3 80.3 + - - +
47C GLU* 1.3 62.9 + - - +
49C PHE* 3.3 9.8 + - + +
50C ASN* 2.9 37.5 + - - +
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Residues in contact with GLU 47 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
43C SER 3.0 18.3 + - - +
44C LYS* 3.9 20.2 + - - +
46C VAL* 1.3 77.7 - - + +
48C PHE* 1.3 79.0 + - + +
50C ASN* 3.1 11.5 + - + +
51C GLN* 2.9 42.6 + - + +
126C MET* 5.3 3.1 - - - +
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Residues in contact with PHE 48 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
44C LYS* 2.9 47.8 + - + +
45C SER* 3.9 3.8 - - - +
47C GLU* 1.3 89.7 - - + +
49C PHE* 1.3 62.7 + - - +
51C GLN* 3.3 5.8 + - + +
52C LYS* 3.0 26.0 + - - +
126C MET* 3.5 54.5 - - + -
130C ASN* 6.0 0.7 - - - -
198C PHE* 4.4 24.0 - + + -
201C GLN* 3.9 29.4 - - + +
202C ILE* 4.2 18.6 - - + -
205C PHE* 5.3 2.2 - - + -
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Residues in contact with PHE 49 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
45C SER 2.9 17.2 + - - +
46C VAL* 3.6 9.4 - - + +
48C PHE* 1.3 77.3 - - - +
50C ASN* 1.3 71.2 + - - +
52C LYS* 3.9 6.9 - - + +
53C ARG* 3.0 63.4 + - + +
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Residues in contact with ASN 50 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
46C VAL* 2.9 32.7 + - - +
47C GLU* 3.4 10.5 - - + +
49C PHE* 1.3 83.7 - - - +
51C GLN* 1.3 65.0 + - + +
53C ARG* 3.1 17.3 + - - +
54C ARG* 2.9 27.6 + - - +
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Residues in contact with GLN 51 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
47C GLU* 2.9 40.7 + - + +
48C PHE* 3.8 6.5 - - - +
50C ASN* 1.3 75.3 - - + +
52C LYS* 1.3 63.9 + - - +
54C ARG* 4.2 19.8 + - - +
55C LEU* 3.0 27.7 + - - +
83C LEU* 5.1 12.1 - - - +
125C GLN* 5.5 6.7 - - - +
126C MET* 5.1 13.1 - - + -
205C PHE* 3.5 28.3 - - + -
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Residues in contact with LYS 52 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
48C PHE 3.0 16.8 + - - +
49C PHE* 3.9 7.4 - - + +
51C GLN* 1.3 76.0 - - - +
53C ARG* 1.3 66.0 + - - +
55C LEU* 3.9 2.4 - - - +
56C LYS* 2.9 40.3 + - + +
204C GLY 6.5 0.2 - - - -
205C PHE* 4.0 15.2 - - + -
208C MET* 3.8 30.6 - - + +
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Residues in contact with ARG 53 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
49C PHE* 3.0 50.6 + - + +
50C ASN* 3.6 13.4 + - - +
52C LYS* 1.3 78.5 - - - +
54C ARG* 1.3 66.3 + - - +
56C LYS* 3.2 6.3 + - - +
57C ARG* 3.0 21.0 + - + +
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Residues in contact with ARG 54 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
50C ASN 2.9 16.5 + - - +
51C GLN* 4.3 18.2 + - - +
53C ARG* 1.3 78.4 - - + +
55C LEU* 1.3 65.0 + - - +
57C ARG* 3.0 36.5 + - - +
58C GLU* 2.9 30.9 + - - +
78C PHE 4.8 3.2 + - - -
79C GLY* 4.8 11.3 - - - -
81C LYS* 4.0 13.7 + - - +
82C SER* 3.9 31.0 - - - +
83C LEU* 4.9 3.4 - - - +
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Residues in contact with LEU 55 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
51C GLN 3.0 20.5 + - - +
52C LYS* 3.9 2.7 - - - +
54C ARG* 1.3 76.8 - - - +
56C LYS* 1.3 62.6 - - - +
58C GLU* 3.2 11.1 + - - +
59C GLN* 2.9 21.8 + - + +
83C LEU* 4.7 19.1 - - + -
84C SER* 3.9 20.6 - - - +
205C PHE* 4.3 21.3 - - + -
208C MET* 3.9 31.0 - - + -
209C LEU* 4.1 23.6 - - + +
212C VAL* 4.6 12.8 - - + -
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Residues in contact with LYS 56 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
52C LYS* 2.9 29.8 + - + +
53C ARG* 3.6 5.6 - - - +
55C LEU* 1.3 74.5 - - - +
57C ARG* 1.3 63.9 + - - +
59C GLN* 3.3 12.6 + - - +
60C GLN* 3.0 40.1 + - + +
208C MET* 4.5 21.0 - - + -
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Residues in contact with ARG 57 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
53C ARG* 3.0 13.6 + - + +
54C ARG* 3.2 35.4 - - - +
56C LYS* 1.3 75.6 - - - +
58C GLU* 1.3 83.2 + - - +
60C GLN* 3.0 19.2 + - - +
61C LEU* 3.0 27.0 + - + +
77C ASP 4.5 4.6 + - - -
78C PHE* 4.3 30.6 + - - -
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Residues in contact with GLU 58 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
54C ARG* 2.9 28.6 + - - +
55C LEU* 3.2 12.2 + - - +
57C ARG* 1.3 96.3 + - + +
59C GLN* 1.3 64.9 + - - +
61C LEU* 3.2 3.7 + - - +
62C LEU* 2.9 28.2 + - - +
78C PHE* 3.8 35.0 - - + +
82C SER* 2.7 37.0 + - - -
83C LEU 4.4 1.4 + - - -
84C SER* 3.1 26.2 + - - +
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Residues in contact with GLN 59 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
55C LEU* 2.9 13.8 + - + +
56C LYS* 3.6 11.2 - - - +
57C ARG 3.2 0.2 - - - -
58C GLU* 1.3 76.8 - - - +
60C GLN* 1.3 71.3 + - - +
62C LEU* 3.2 6.5 + - + +
63C ALA* 3.0 24.1 + - + +
208C MET* 3.8 26.2 - - - +
211C ASP* 4.9 15.0 + - - +
212C VAL* 4.0 26.7 - - + +
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Residues in contact with GLN 60 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
56C LYS* 3.0 29.8 + - + +
57C ARG* 3.0 11.3 + - - +
59C GLN* 1.3 86.4 - - - +
61C LEU* 1.3 66.6 + - + +
63C ALA* 3.3 21.4 + - - +
64C GLU* 4.2 6.8 - - - +
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Residues in contact with LEU 61 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
57C ARG* 3.0 31.5 + - + +
58C GLU 3.2 6.9 + - - +
60C GLN* 1.3 79.6 - - + +
62C LEU* 1.3 61.5 + - - +
63C ALA 3.1 1.2 + - - -
64C GLU* 3.2 40.5 + - - +
74C ILE* 3.5 24.0 - - + +
78C PHE* 3.8 25.4 - - + -
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Residues in contact with LEU 62 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
58C GLU 2.9 18.5 + - - +
59C GLN* 3.7 5.2 - - + +
61C LEU* 1.3 73.5 - - - +
63C ALA* 1.3 62.8 + - - +
64C GLU 3.1 1.4 + - - -
65C ALA* 3.3 18.8 + - + +
71C ALA* 3.7 35.4 - - + +
74C ILE* 3.9 19.5 - - + -
75C ALA* 4.2 7.4 - - + -
78C PHE* 4.2 5.6 - - + -
84C SER* 4.3 20.9 - - - +
88C LEU* 3.9 21.5 - - + -
212C VAL* 4.8 13.9 - - + -
215C GLN* 3.6 21.4 + - + -
216C VAL* 5.6 3.1 - - + -
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Residues in contact with ALA 63 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
59C GLN* 3.0 13.6 + - + +
60C GLN* 3.4 21.3 - - - +
61C LEU 3.1 1.2 - - - -
62C LEU* 1.3 78.1 - - - +
64C GLU* 1.3 59.4 + - + +
65C ALA 3.3 3.5 + - - +
215C GLN* 4.8 9.1 + - - +
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il